Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_05746

Experiment: NF

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_05745 and MPMX19_05746 overlap by 1 nucleotidesMPMX19_05746 and MPMX19_05747 are separated by 147 nucleotides MPMX19_05745: MPMX19_05745 - Sensor histidine kinase RcsC, at 462,624 to 466,052 _05745 MPMX19_05746: MPMX19_05746 - hypothetical protein, at 466,052 to 467,893 _05746 MPMX19_05747: MPMX19_05747 - Transcriptional regulatory protein DegU, at 468,041 to 468,763 _05747 Position (kb) 466 467 468Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 465.190 kb on + strand, within MPMX19_05745at 465.190 kb on + strand, within MPMX19_05745at 465.190 kb on + strand, within MPMX19_05745at 465.190 kb on + strand, within MPMX19_05745at 465.190 kb on + strand, within MPMX19_05745at 465.190 kb on + strand, within MPMX19_05745at 465.190 kb on + strand, within MPMX19_05745at 465.190 kb on + strand, within MPMX19_05745at 465.190 kb on + strand, within MPMX19_05745at 465.191 kb on - strand, within MPMX19_05745at 465.191 kb on - strand, within MPMX19_05745at 465.191 kb on - strand, within MPMX19_05745at 465.191 kb on - strand, within MPMX19_05745at 465.191 kb on - strand, within MPMX19_05745at 465.191 kb on - strand, within MPMX19_05745at 465.191 kb on - strand, within MPMX19_05745at 465.191 kb on - strand, within MPMX19_05745at 465.191 kb on - strand, within MPMX19_05745at 465.191 kb on - strand, within MPMX19_05745at 465.496 kb on + strand, within MPMX19_05745at 465.496 kb on + strand, within MPMX19_05745at 465.496 kb on + strand, within MPMX19_05745at 465.496 kb on + strand, within MPMX19_05745at 465.496 kb on + strand, within MPMX19_05745at 465.496 kb on + strand, within MPMX19_05745at 465.496 kb on + strand, within MPMX19_05745at 465.496 kb on + strand, within MPMX19_05745at 465.496 kb on + strand, within MPMX19_05745at 465.496 kb on + strand, within MPMX19_05745at 465.496 kb on + strand, within MPMX19_05745at 465.496 kb on + strand, within MPMX19_05745at 465.497 kb on - strand, within MPMX19_05745at 465.497 kb on - strand, within MPMX19_05745at 465.497 kb on - strand, within MPMX19_05745at 465.497 kb on - strand, within MPMX19_05745at 465.497 kb on - strand, within MPMX19_05745at 465.497 kb on - strand, within MPMX19_05745at 465.497 kb on - strand, within MPMX19_05745at 465.497 kb on - strand, within MPMX19_05745at 465.823 kb on + strandat 465.823 kb on + strandat 465.823 kb on + strandat 465.823 kb on + strandat 465.823 kb on + strandat 465.824 kb on - strandat 465.950 kb on - strandat 465.950 kb on - strandat 465.950 kb on - strandat 465.950 kb on - strandat 466.251 kb on + strand, within MPMX19_05746at 466.251 kb on + strand, within MPMX19_05746at 466.252 kb on - strand, within MPMX19_05746at 466.252 kb on - strand, within MPMX19_05746at 467.292 kb on + strand, within MPMX19_05746at 467.292 kb on + strand, within MPMX19_05746at 467.292 kb on + strand, within MPMX19_05746at 467.292 kb on + strand, within MPMX19_05746at 467.293 kb on - strand, within MPMX19_05746at 467.293 kb on - strand, within MPMX19_05746at 467.293 kb on - strand, within MPMX19_05746at 467.293 kb on - strand, within MPMX19_05746at 467.293 kb on - strand, within MPMX19_05746at 467.343 kb on + strand, within MPMX19_05746at 467.343 kb on + strand, within MPMX19_05746at 467.343 kb on + strand, within MPMX19_05746at 467.344 kb on - strand, within MPMX19_05746at 467.344 kb on - strand, within MPMX19_05746at 467.344 kb on - strand, within MPMX19_05746at 467.344 kb on - strand, within MPMX19_05746at 467.344 kb on - strand, within MPMX19_05746at 467.807 kb on + strandat 467.808 kb on - strandat 467.848 kb on + strandat 467.848 kb on + strandat 467.848 kb on + strandat 467.848 kb on + strandat 467.848 kb on + strandat 467.848 kb on + strandat 467.848 kb on + strandat 467.848 kb on + strandat 467.848 kb on + strandat 467.848 kb on + strandat 467.848 kb on + strandat 467.848 kb on + strandat 467.848 kb on + strandat 467.848 kb on + strandat 467.849 kb on - strandat 467.849 kb on - strandat 467.849 kb on - strandat 467.849 kb on - strandat 467.849 kb on - strandat 467.849 kb on - strandat 467.849 kb on - strandat 467.849 kb on - strandat 467.849 kb on - strandat 467.849 kb on - strandat 467.849 kb on - strandat 467.849 kb on - strandat 467.849 kb on - strandat 467.849 kb on - strandat 467.849 kb on - strandat 467.883 kb on + strandat 467.906 kb on + strandat 467.913 kb on + strandat 467.913 kb on + strandat 467.914 kb on - strandat 467.966 kb on + strandat 467.966 kb on + strandat 467.966 kb on + strandat 467.967 kb on - strandat 467.967 kb on - strandat 468.004 kb on + strandat 468.004 kb on + strandat 468.004 kb on + strandat 468.004 kb on + strandat 468.005 kb on - strandat 468.005 kb on - strandat 468.601 kb on - strand, within MPMX19_05747at 468.646 kb on + strand, within MPMX19_05747at 468.647 kb on - strand, within MPMX19_05747at 468.802 kb on + strandat 468.802 kb on + strandat 468.802 kb on + strandat 468.803 kb on - strandat 468.803 kb on - strandat 468.803 kb on - strandat 468.803 kb on - strandat 468.805 kb on + strandat 468.805 kb on + strandat 468.806 kb on - strandat 468.806 kb on - strandat 468.821 kb on + strandat 468.821 kb on + strandat 468.821 kb on + strandat 468.821 kb on + strandat 468.822 kb on - strandat 468.822 kb on - strandat 468.822 kb on - strandat 468.822 kb on - strandat 468.823 kb on + strandat 468.823 kb on + strandat 468.823 kb on + strandat 468.824 kb on - strandat 468.824 kb on - strandat 468.824 kb on - strandat 468.857 kb on + strandat 468.858 kb on - strandat 468.875 kb on + strandat 468.875 kb on + strandat 468.875 kb on + strandat 468.875 kb on + strandat 468.876 kb on - strandat 468.876 kb on - strandat 468.876 kb on - strandat 468.876 kb on - strandat 468.876 kb on - strandat 468.892 kb on + strandat 468.892 kb on + strandat 468.892 kb on + strandat 468.892 kb on + strandat 468.893 kb on - strandat 468.893 kb on - strandat 468.893 kb on - strandat 468.893 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NF
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465,190 + MPMX19_05745 0.75 -1.6
465,190 + MPMX19_05745 0.75 -0.2
465,190 + MPMX19_05745 0.75 -0.5
465,190 + MPMX19_05745 0.75 +0.6
465,190 + MPMX19_05745 0.75 -1.1
465,190 + MPMX19_05745 0.75 -1.6
465,190 + MPMX19_05745 0.75 -0.1
465,190 + MPMX19_05745 0.75 -1.6
465,190 + MPMX19_05745 0.75 -0.4
465,191 - MPMX19_05745 0.75 -0.0
465,191 - MPMX19_05745 0.75 +0.9
465,191 - MPMX19_05745 0.75 -0.6
465,191 - MPMX19_05745 0.75 +0.1
465,191 - MPMX19_05745 0.75 -1.0
465,191 - MPMX19_05745 0.75 -0.3
465,191 - MPMX19_05745 0.75 -1.1
465,191 - MPMX19_05745 0.75 -0.3
465,191 - MPMX19_05745 0.75 -0.0
465,191 - MPMX19_05745 0.75 -1.8
465,496 + MPMX19_05745 0.84 -1.4
465,496 + MPMX19_05745 0.84 +1.4
465,496 + MPMX19_05745 0.84 +0.5
465,496 + MPMX19_05745 0.84 -1.0
465,496 + MPMX19_05745 0.84 +0.1
465,496 + MPMX19_05745 0.84 -1.0
465,496 + MPMX19_05745 0.84 +0.2
465,496 + MPMX19_05745 0.84 -1.3
465,496 + MPMX19_05745 0.84 -0.2
465,496 + MPMX19_05745 0.84 +1.3
465,496 + MPMX19_05745 0.84 -0.3
465,496 + MPMX19_05745 0.84 -1.1
465,497 - MPMX19_05745 0.84 -1.1
465,497 - MPMX19_05745 0.84 -1.1
465,497 - MPMX19_05745 0.84 +0.1
465,497 - MPMX19_05745 0.84 -2.6
465,497 - MPMX19_05745 0.84 -0.4
465,497 - MPMX19_05745 0.84 -0.4
465,497 - MPMX19_05745 0.84 +0.8
465,497 - MPMX19_05745 0.84 +0.1
465,823 + +0.1
465,823 + -0.0
465,823 + -0.5
465,823 + +0.1
465,823 + -0.7
465,824 - -0.4
465,950 - -0.2
465,950 - +0.1
465,950 - -1.2
465,950 - +0.4
466,251 + MPMX19_05746 0.11 -2.0
466,251 + MPMX19_05746 0.11 -0.2
466,252 - MPMX19_05746 0.11 -0.1
466,252 - MPMX19_05746 0.11 +0.7
467,292 + MPMX19_05746 0.67 -0.6
467,292 + MPMX19_05746 0.67 +0.8
467,292 + MPMX19_05746 0.67 +0.1
467,292 + MPMX19_05746 0.67 +0.4
467,293 - MPMX19_05746 0.67 -2.2
467,293 - MPMX19_05746 0.67 -0.5
467,293 - MPMX19_05746 0.67 +1.0
467,293 - MPMX19_05746 0.67 -0.6
467,293 - MPMX19_05746 0.67 -0.7
467,343 + MPMX19_05746 0.70 +0.9
467,343 + MPMX19_05746 0.70 -0.9
467,343 + MPMX19_05746 0.70 -1.0
467,344 - MPMX19_05746 0.70 +0.3
467,344 - MPMX19_05746 0.70 -1.8
467,344 - MPMX19_05746 0.70 +1.0
467,344 - MPMX19_05746 0.70 -2.1
467,344 - MPMX19_05746 0.70 -0.5
467,807 + -1.5
467,808 - -1.3
467,848 + +0.8
467,848 + +0.7
467,848 + -0.7
467,848 + -1.3
467,848 + -1.8
467,848 + +0.1
467,848 + +0.3
467,848 + -0.4
467,848 + -1.6
467,848 + -0.4
467,848 + -1.5
467,848 + +1.2
467,848 + -1.0
467,848 + +0.3
467,849 - -0.3
467,849 - -0.9
467,849 - +0.5
467,849 - -0.5
467,849 - -0.1
467,849 - -1.3
467,849 - -0.9
467,849 - -2.3
467,849 - -0.3
467,849 - +0.9
467,849 - -0.4
467,849 - +0.1
467,849 - -2.0
467,849 - -1.5
467,849 - -0.6
467,883 + +0.5
467,906 + -0.0
467,913 + -0.2
467,913 + -1.1
467,914 - -1.1
467,966 + +0.1
467,966 + -0.7
467,966 + +2.0
467,967 - -0.0
467,967 - -1.4
468,004 + -1.6
468,004 + -1.5
468,004 + +0.1
468,004 + +0.2
468,005 - +0.1
468,005 - -2.1
468,601 - MPMX19_05747 0.77 -0.2
468,646 + MPMX19_05747 0.84 +0.1
468,647 - MPMX19_05747 0.84 -1.4
468,802 + -0.3
468,802 + -0.0
468,802 + +2.4
468,803 - +0.1
468,803 - -0.9
468,803 - +1.0
468,803 - -1.5
468,805 + +0.7
468,805 + -2.8
468,806 - -1.1
468,806 - -1.6
468,821 + -1.1
468,821 + -0.4
468,821 + -0.4
468,821 + +0.3
468,822 - -1.8
468,822 - -1.0
468,822 - +0.7
468,822 - -0.9
468,823 + +0.1
468,823 + +0.1
468,823 + -3.0
468,824 - -1.6
468,824 - -1.3
468,824 - +0.3
468,857 + -0.6
468,858 - +0.3
468,875 + -0.0
468,875 + -0.5
468,875 + -1.1
468,875 + -0.9
468,876 - -1.6
468,876 - +0.3
468,876 - +0.4
468,876 - +0.5
468,876 - -0.6
468,892 + +0.4
468,892 + +0.1
468,892 + +1.0
468,892 + -0.4
468,893 - -1.2
468,893 - -0.0
468,893 - +0.0
468,893 - -0.4

Or see this region's nucleotide sequence