Experiment: NF
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_05680 and MPMX19_05681 are separated by 257 nucleotides MPMX19_05681 and MPMX19_05682 are separated by 113 nucleotides MPMX19_05682 and MPMX19_05683 are separated by 48 nucleotides MPMX19_05683 and MPMX19_05684 are separated by 71 nucleotides MPMX19_05684 and MPMX19_05685 overlap by 4 nucleotides
MPMX19_05680: MPMX19_05680 - Cell cycle response regulator CtrA, at 398,414 to 399,154
_05680
MPMX19_05681: MPMX19_05681 - Cold shock protein CspA, at 399,412 to 399,621
_05681
MPMX19_05682: MPMX19_05682 - hypothetical protein, at 399,735 to 399,947
_05682
MPMX19_05683: MPMX19_05683 - hypothetical protein, at 399,996 to 400,220
_05683
MPMX19_05684: MPMX19_05684 - Chemotaxis protein methyltransferase 1, at 400,292 to 401,131
_05684
MPMX19_05685: MPMX19_05685 - Protein-glutamate methylesterase/protein-glutamine glutaminase 2, at 401,128 to 402,294
_05685
Position (kb) 399
400
401 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 399.041 kb on + strand, within MPMX19_05680 at 399.041 kb on + strand, within MPMX19_05680 at 399.041 kb on + strand, within MPMX19_05680 at 399.041 kb on + strand, within MPMX19_05680 at 399.041 kb on + strand, within MPMX19_05680 at 399.041 kb on + strand, within MPMX19_05680 at 399.041 kb on + strand, within MPMX19_05680 at 399.041 kb on + strand, within MPMX19_05680 at 399.041 kb on + strand, within MPMX19_05680 at 399.041 kb on + strand, within MPMX19_05680 at 399.041 kb on + strand, within MPMX19_05680 at 399.041 kb on + strand, within MPMX19_05680 at 399.068 kb on + strand, within MPMX19_05680 at 399.068 kb on + strand, within MPMX19_05680 at 399.237 kb on + strand at 399.237 kb on + strand at 399.237 kb on + strand at 399.238 kb on - strand at 399.238 kb on - strand at 399.238 kb on - strand at 399.399 kb on - strand at 399.559 kb on + strand, within MPMX19_05681 at 399.559 kb on + strand, within MPMX19_05681 at 399.560 kb on - strand, within MPMX19_05681 at 399.753 kb on + strand at 399.753 kb on + strand at 399.753 kb on + strand at 399.753 kb on + strand at 399.753 kb on + strand at 399.753 kb on + strand at 399.753 kb on + strand at 399.753 kb on + strand at 399.753 kb on + strand at 399.753 kb on + strand at 399.754 kb on - strand at 399.754 kb on - strand at 399.754 kb on - strand at 399.754 kb on - strand at 399.754 kb on - strand at 399.981 kb on + strand at 399.982 kb on - strand at 399.982 kb on - strand at 399.982 kb on - strand at 400.053 kb on + strand, within MPMX19_05683 at 400.053 kb on + strand, within MPMX19_05683 at 400.053 kb on + strand, within MPMX19_05683 at 400.054 kb on - strand, within MPMX19_05683 at 400.137 kb on + strand, within MPMX19_05683 at 400.137 kb on + strand, within MPMX19_05683 at 400.137 kb on + strand, within MPMX19_05683 at 400.137 kb on + strand, within MPMX19_05683 at 400.137 kb on + strand, within MPMX19_05683 at 400.137 kb on + strand, within MPMX19_05683 at 400.137 kb on + strand, within MPMX19_05683 at 400.137 kb on + strand, within MPMX19_05683 at 400.138 kb on - strand, within MPMX19_05683 at 400.138 kb on - strand, within MPMX19_05683 at 400.138 kb on - strand, within MPMX19_05683 at 400.138 kb on - strand, within MPMX19_05683 at 400.138 kb on - strand, within MPMX19_05683 at 400.138 kb on - strand, within MPMX19_05683 at 400.293 kb on + strand at 400.293 kb on + strand at 400.293 kb on + strand at 400.294 kb on - strand at 400.335 kb on + strand at 400.335 kb on + strand at 400.336 kb on - strand at 400.336 kb on - strand at 400.336 kb on - strand at 400.336 kb on - strand at 400.369 kb on + strand at 400.369 kb on + strand at 400.369 kb on + strand at 400.369 kb on + strand at 400.369 kb on + strand at 400.369 kb on + strand at 400.370 kb on - strand at 400.370 kb on - strand at 400.370 kb on - strand at 400.370 kb on - strand at 400.407 kb on + strand, within MPMX19_05684 at 400.407 kb on + strand, within MPMX19_05684 at 400.407 kb on + strand, within MPMX19_05684 at 400.407 kb on + strand, within MPMX19_05684 at 400.407 kb on + strand, within MPMX19_05684 at 400.407 kb on + strand, within MPMX19_05684 at 400.407 kb on + strand, within MPMX19_05684 at 400.407 kb on + strand, within MPMX19_05684 at 400.408 kb on - strand, within MPMX19_05684 at 400.408 kb on - strand, within MPMX19_05684 at 400.408 kb on - strand, within MPMX19_05684 at 400.408 kb on - strand, within MPMX19_05684 at 400.479 kb on + strand, within MPMX19_05684 at 400.479 kb on + strand, within MPMX19_05684 at 400.479 kb on + strand, within MPMX19_05684 at 400.479 kb on + strand, within MPMX19_05684 at 400.479 kb on + strand, within MPMX19_05684 at 400.479 kb on + strand, within MPMX19_05684 at 400.479 kb on + strand, within MPMX19_05684 at 400.480 kb on - strand, within MPMX19_05684 at 400.480 kb on - strand, within MPMX19_05684 at 400.480 kb on - strand, within MPMX19_05684 at 400.480 kb on - strand, within MPMX19_05684 at 400.480 kb on - strand, within MPMX19_05684 at 400.668 kb on + strand, within MPMX19_05684 at 400.668 kb on + strand, within MPMX19_05684 at 400.668 kb on + strand, within MPMX19_05684 at 400.668 kb on + strand, within MPMX19_05684 at 400.668 kb on + strand, within MPMX19_05684 at 400.668 kb on + strand, within MPMX19_05684 at 400.668 kb on + strand, within MPMX19_05684 at 400.668 kb on + strand, within MPMX19_05684 at 400.669 kb on - strand, within MPMX19_05684 at 400.669 kb on - strand, within MPMX19_05684 at 400.669 kb on - strand, within MPMX19_05684 at 400.669 kb on - strand, within MPMX19_05684 at 400.669 kb on - strand, within MPMX19_05684 at 400.669 kb on - strand, within MPMX19_05684 at 400.782 kb on + strand, within MPMX19_05684 at 400.782 kb on + strand, within MPMX19_05684 at 400.782 kb on + strand, within MPMX19_05684 at 400.782 kb on + strand, within MPMX19_05684 at 400.782 kb on + strand, within MPMX19_05684 at 400.782 kb on + strand, within MPMX19_05684 at 400.783 kb on - strand, within MPMX19_05684 at 400.783 kb on - strand, within MPMX19_05684 at 400.783 kb on - strand, within MPMX19_05684 at 400.783 kb on - strand, within MPMX19_05684 at 400.783 kb on - strand, within MPMX19_05684 at 400.783 kb on - strand, within MPMX19_05684 at 401.052 kb on + strand at 401.052 kb on + strand at 401.052 kb on + strand at 401.052 kb on + strand at 401.052 kb on + strand at 401.052 kb on + strand at 401.052 kb on + strand at 401.052 kb on + strand at 401.052 kb on + strand at 401.052 kb on + strand at 401.052 kb on + strand at 401.052 kb on + strand at 401.052 kb on + strand at 401.052 kb on + strand at 401.052 kb on + strand at 401.052 kb on + strand at 401.052 kb on + strand at 401.052 kb on + strand at 401.053 kb on - strand at 401.053 kb on - strand at 401.053 kb on - strand at 401.053 kb on - strand at 401.053 kb on - strand at 401.053 kb on - strand at 401.053 kb on - strand at 401.053 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NF remove 399,041 + MPMX19_05680 0.85 -1.8 399,041 + MPMX19_05680 0.85 -0.9 399,041 + MPMX19_05680 0.85 +0.7 399,041 + MPMX19_05680 0.85 -0.5 399,041 + MPMX19_05680 0.85 -1.3 399,041 + MPMX19_05680 0.85 -0.5 399,041 + MPMX19_05680 0.85 +0.7 399,041 + MPMX19_05680 0.85 -1.6 399,041 + MPMX19_05680 0.85 -0.6 399,041 + MPMX19_05680 0.85 -1.6 399,041 + MPMX19_05680 0.85 -0.3 399,041 + MPMX19_05680 0.85 -2.0 399,068 + MPMX19_05680 0.88 +1.7 399,068 + MPMX19_05680 0.88 -1.2 399,237 + -0.6 399,237 + +0.3 399,237 + -0.7 399,238 - -1.3 399,238 - -0.4 399,238 - -1.9 399,399 - -0.6 399,559 + MPMX19_05681 0.70 -0.8 399,559 + MPMX19_05681 0.70 +0.1 399,560 - MPMX19_05681 0.70 +0.1 399,753 + -0.9 399,753 + -1.1 399,753 + -2.8 399,753 + +0.4 399,753 + -0.8 399,753 + -0.7 399,753 + +0.9 399,753 + -0.2 399,753 + -0.9 399,753 + +0.3 399,754 - -0.9 399,754 - -0.0 399,754 - -1.1 399,754 - -0.5 399,754 - -0.6 399,981 + -2.6 399,982 - -2.2 399,982 - +0.2 399,982 - +0.4 400,053 + MPMX19_05683 0.25 -0.9 400,053 + MPMX19_05683 0.25 +0.2 400,053 + MPMX19_05683 0.25 -1.8 400,054 - MPMX19_05683 0.26 -1.4 400,137 + MPMX19_05683 0.63 +0.7 400,137 + MPMX19_05683 0.63 -0.5 400,137 + MPMX19_05683 0.63 -2.0 400,137 + MPMX19_05683 0.63 -0.5 400,137 + MPMX19_05683 0.63 -1.3 400,137 + MPMX19_05683 0.63 -1.5 400,137 + MPMX19_05683 0.63 -1.3 400,137 + MPMX19_05683 0.63 -0.5 400,138 - MPMX19_05683 0.63 -1.2 400,138 - MPMX19_05683 0.63 -1.2 400,138 - MPMX19_05683 0.63 -1.3 400,138 - MPMX19_05683 0.63 -0.8 400,138 - MPMX19_05683 0.63 -0.8 400,138 - MPMX19_05683 0.63 -2.1 400,293 + -1.6 400,293 + -1.1 400,293 + +0.1 400,294 - +0.7 400,335 + -0.9 400,335 + -0.8 400,336 - -1.0 400,336 - -0.4 400,336 - -0.3 400,336 - -1.5 400,369 + -0.8 400,369 + +0.1 400,369 + +0.7 400,369 + -0.1 400,369 + -0.4 400,369 + -0.7 400,370 - -0.4 400,370 - -0.5 400,370 - +0.2 400,370 - -1.8 400,407 + MPMX19_05684 0.14 -0.7 400,407 + MPMX19_05684 0.14 -1.2 400,407 + MPMX19_05684 0.14 +1.0 400,407 + MPMX19_05684 0.14 +0.4 400,407 + MPMX19_05684 0.14 -0.8 400,407 + MPMX19_05684 0.14 -1.8 400,407 + MPMX19_05684 0.14 -1.2 400,407 + MPMX19_05684 0.14 -1.8 400,408 - MPMX19_05684 0.14 +0.0 400,408 - MPMX19_05684 0.14 -0.5 400,408 - MPMX19_05684 0.14 -0.8 400,408 - MPMX19_05684 0.14 +0.1 400,479 + MPMX19_05684 0.22 -1.5 400,479 + MPMX19_05684 0.22 +0.1 400,479 + MPMX19_05684 0.22 +1.1 400,479 + MPMX19_05684 0.22 -1.5 400,479 + MPMX19_05684 0.22 -1.4 400,479 + MPMX19_05684 0.22 -1.2 400,479 + MPMX19_05684 0.22 -1.5 400,480 - MPMX19_05684 0.22 -1.0 400,480 - MPMX19_05684 0.22 -1.3 400,480 - MPMX19_05684 0.22 -1.8 400,480 - MPMX19_05684 0.22 -1.8 400,480 - MPMX19_05684 0.22 -1.9 400,668 + MPMX19_05684 0.45 -0.2 400,668 + MPMX19_05684 0.45 +1.0 400,668 + MPMX19_05684 0.45 -1.5 400,668 + MPMX19_05684 0.45 +0.4 400,668 + MPMX19_05684 0.45 -0.6 400,668 + MPMX19_05684 0.45 -0.6 400,668 + MPMX19_05684 0.45 -1.8 400,668 + MPMX19_05684 0.45 +1.7 400,669 - MPMX19_05684 0.45 -1.2 400,669 - MPMX19_05684 0.45 -0.6 400,669 - MPMX19_05684 0.45 -1.4 400,669 - MPMX19_05684 0.45 +0.0 400,669 - MPMX19_05684 0.45 -1.8 400,669 - MPMX19_05684 0.45 +0.2 400,782 + MPMX19_05684 0.58 -0.7 400,782 + MPMX19_05684 0.58 +1.0 400,782 + MPMX19_05684 0.58 +0.3 400,782 + MPMX19_05684 0.58 -0.2 400,782 + MPMX19_05684 0.58 -0.6 400,782 + MPMX19_05684 0.58 +0.3 400,783 - MPMX19_05684 0.58 +0.7 400,783 - MPMX19_05684 0.58 -0.2 400,783 - MPMX19_05684 0.58 -0.5 400,783 - MPMX19_05684 0.58 +0.2 400,783 - MPMX19_05684 0.58 -0.3 400,783 - MPMX19_05684 0.58 -2.2 401,052 + -1.0 401,052 + -0.2 401,052 + +0.9 401,052 + -1.6 401,052 + -0.8 401,052 + -0.6 401,052 + -0.3 401,052 + -0.4 401,052 + -1.5 401,052 + -0.3 401,052 + -1.6 401,052 + +0.7 401,052 + +1.4 401,052 + +0.7 401,052 + -2.2 401,052 + +0.9 401,052 + +0.7 401,052 + -0.9 401,053 - -2.1 401,053 - -0.6 401,053 - -0.1 401,053 - -0.6 401,053 - -0.7 401,053 - -0.5 401,053 - -0.3 401,053 - -1.0
Or see this region's nucleotide sequence