Experiment: NF
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_05550 and MPMX19_05551 are separated by 183 nucleotides MPMX19_05551 and MPMX19_05552 are separated by 10 nucleotides MPMX19_05552 and MPMX19_05553 are separated by 40 nucleotides
MPMX19_05550: MPMX19_05550 - Photosystem I assembly protein Ycf3, at 255,418 to 259,158
_05550
MPMX19_05551: MPMX19_05551 - Chemotaxis protein CheY, at 259,342 to 259,737
_05551
MPMX19_05552: MPMX19_05552 - hypothetical protein, at 259,748 to 260,380
_05552
MPMX19_05553: MPMX19_05553 - hypothetical protein, at 260,421 to 262,397
_05553
Position (kb) 259
260 Strain fitness (log2 ratio) -2
-1
0
1
2 at 258.440 kb on + strand, within MPMX19_05550 at 258.440 kb on + strand, within MPMX19_05550 at 258.440 kb on + strand, within MPMX19_05550 at 258.440 kb on + strand, within MPMX19_05550 at 258.441 kb on - strand, within MPMX19_05550 at 258.441 kb on - strand, within MPMX19_05550 at 258.441 kb on - strand, within MPMX19_05550 at 258.441 kb on - strand, within MPMX19_05550 at 258.665 kb on + strand, within MPMX19_05550 at 258.665 kb on + strand, within MPMX19_05550 at 258.665 kb on + strand, within MPMX19_05550 at 258.665 kb on + strand, within MPMX19_05550 at 258.665 kb on + strand, within MPMX19_05550 at 258.665 kb on + strand, within MPMX19_05550 at 258.665 kb on + strand, within MPMX19_05550 at 258.665 kb on + strand, within MPMX19_05550 at 258.665 kb on + strand, within MPMX19_05550 at 258.665 kb on + strand, within MPMX19_05550 at 258.666 kb on - strand, within MPMX19_05550 at 258.666 kb on - strand, within MPMX19_05550 at 258.716 kb on + strand, within MPMX19_05550 at 258.717 kb on - strand, within MPMX19_05550 at 258.747 kb on - strand, within MPMX19_05550 at 258.818 kb on + strand at 258.818 kb on + strand at 258.818 kb on + strand at 258.818 kb on + strand at 258.818 kb on + strand at 258.818 kb on + strand at 258.818 kb on + strand at 258.818 kb on + strand at 258.818 kb on + strand at 258.819 kb on - strand at 258.819 kb on - strand at 258.819 kb on - strand at 258.819 kb on - strand at 258.819 kb on - strand at 258.819 kb on - strand at 258.848 kb on + strand at 258.849 kb on - strand at 258.849 kb on - strand at 258.849 kb on - strand at 259.052 kb on + strand at 259.052 kb on + strand at 259.052 kb on + strand at 259.052 kb on + strand at 259.052 kb on + strand at 259.052 kb on + strand at 259.053 kb on - strand at 259.053 kb on - strand at 259.053 kb on - strand at 259.053 kb on - strand at 259.053 kb on - strand at 259.053 kb on - strand at 259.053 kb on - strand at 259.053 kb on - strand at 259.198 kb on - strand at 259.244 kb on + strand at 259.244 kb on + strand at 259.245 kb on - strand at 259.245 kb on - strand at 259.275 kb on + strand at 259.275 kb on + strand at 259.275 kb on + strand at 259.275 kb on + strand at 259.275 kb on + strand at 259.276 kb on - strand at 259.276 kb on - strand at 259.277 kb on + strand at 259.277 kb on + strand at 259.277 kb on + strand at 259.277 kb on + strand at 259.278 kb on - strand at 259.278 kb on - strand at 259.278 kb on - strand at 259.278 kb on - strand at 259.278 kb on - strand at 259.278 kb on - strand at 259.278 kb on - strand at 259.278 kb on - strand at 259.278 kb on - strand at 259.339 kb on - strand at 259.359 kb on + strand at 259.359 kb on + strand at 259.360 kb on - strand at 259.360 kb on - strand at 259.508 kb on - strand, within MPMX19_05551 at 259.508 kb on - strand, within MPMX19_05551 at 259.508 kb on - strand, within MPMX19_05551 at 259.508 kb on - strand, within MPMX19_05551 at 260.357 kb on + strand at 260.357 kb on + strand at 260.357 kb on + strand at 260.357 kb on + strand at 260.358 kb on - strand at 260.358 kb on - strand at 260.358 kb on - strand at 260.358 kb on - strand at 260.358 kb on - strand at 260.358 kb on - strand at 260.358 kb on - strand at 260.358 kb on - strand at 260.358 kb on - strand at 260.358 kb on - strand at 260.358 kb on - strand at 260.359 kb on + strand at 260.360 kb on - strand at 260.360 kb on - strand at 260.360 kb on - strand at 260.414 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NF remove 258,440 + MPMX19_05550 0.81 -0.2 258,440 + MPMX19_05550 0.81 -0.6 258,440 + MPMX19_05550 0.81 -1.6 258,440 + MPMX19_05550 0.81 +0.5 258,441 - MPMX19_05550 0.81 -0.1 258,441 - MPMX19_05550 0.81 -0.5 258,441 - MPMX19_05550 0.81 -1.7 258,441 - MPMX19_05550 0.81 +0.2 258,665 + MPMX19_05550 0.87 +0.1 258,665 + MPMX19_05550 0.87 -1.6 258,665 + MPMX19_05550 0.87 -0.2 258,665 + MPMX19_05550 0.87 -0.6 258,665 + MPMX19_05550 0.87 -0.9 258,665 + MPMX19_05550 0.87 -0.4 258,665 + MPMX19_05550 0.87 +0.6 258,665 + MPMX19_05550 0.87 -0.9 258,665 + MPMX19_05550 0.87 -1.7 258,665 + MPMX19_05550 0.87 -2.0 258,666 - MPMX19_05550 0.87 -0.3 258,666 - MPMX19_05550 0.87 -0.8 258,716 + MPMX19_05550 0.88 -0.3 258,717 - MPMX19_05550 0.88 -0.3 258,747 - MPMX19_05550 0.89 -0.8 258,818 + -0.8 258,818 + -1.1 258,818 + -0.1 258,818 + +0.7 258,818 + +0.3 258,818 + -0.1 258,818 + +0.1 258,818 + -1.2 258,818 + +0.8 258,819 - +0.2 258,819 - +0.3 258,819 - +1.2 258,819 - -0.1 258,819 - -0.9 258,819 - +0.2 258,848 + -1.7 258,849 - -0.2 258,849 - +0.2 258,849 - -0.8 259,052 + -0.2 259,052 + +0.6 259,052 + +0.2 259,052 + -0.3 259,052 + -1.6 259,052 + -1.3 259,053 - +0.3 259,053 - +1.2 259,053 - +1.0 259,053 - +0.2 259,053 - -0.4 259,053 - +2.5 259,053 - -0.3 259,053 - -0.5 259,198 - -0.1 259,244 + +0.3 259,244 + +0.7 259,245 - -1.3 259,245 - -1.3 259,275 + -1.0 259,275 + +0.6 259,275 + -1.3 259,275 + -0.7 259,275 + -0.3 259,276 - +0.9 259,276 - -1.3 259,277 + -0.9 259,277 + -0.2 259,277 + -1.1 259,277 + -2.6 259,278 - +0.3 259,278 - -1.1 259,278 - -0.4 259,278 - -0.7 259,278 - -1.1 259,278 - +0.2 259,278 - -0.6 259,278 - -1.1 259,278 - +0.7 259,339 - +0.0 259,359 + -1.3 259,359 + -1.3 259,360 - +1.2 259,360 - -1.1 259,508 - MPMX19_05551 0.42 -0.3 259,508 - MPMX19_05551 0.42 +1.0 259,508 - MPMX19_05551 0.42 +0.3 259,508 - MPMX19_05551 0.42 +0.2 260,357 + +0.4 260,357 + -1.5 260,357 + +0.4 260,357 + +0.3 260,358 - -0.5 260,358 - -1.3 260,358 - -0.8 260,358 - +1.2 260,358 - +0.5 260,358 - -0.8 260,358 - -1.4 260,358 - +0.0 260,358 - -1.6 260,358 - +0.2 260,358 - -0.6 260,359 + -0.9 260,360 - -0.8 260,360 - +0.5 260,360 - -1.7 260,414 - +1.3
Or see this region's nucleotide sequence