Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_05483

Experiment: NF

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_05480 and MPMX19_05481 overlap by 4 nucleotidesMPMX19_05481 and MPMX19_05482 are separated by 97 nucleotidesMPMX19_05482 and MPMX19_05483 are separated by 11 nucleotidesMPMX19_05483 and MPMX19_05484 are separated by 11 nucleotidesMPMX19_05484 and MPMX19_05485 are separated by 9 nucleotidesMPMX19_05485 and MPMX19_05486 are separated by 36 nucleotides MPMX19_05480: MPMX19_05480 - hypothetical protein, at 183,134 to 184,273 _05480 MPMX19_05481: MPMX19_05481 - hypothetical protein, at 184,270 to 184,458 _05481 MPMX19_05482: MPMX19_05482 - hypothetical protein, at 184,556 to 184,882 _05482 MPMX19_05483: MPMX19_05483 - hypothetical protein, at 184,894 to 185,157 _05483 MPMX19_05484: MPMX19_05484 - hypothetical protein, at 185,169 to 185,516 _05484 MPMX19_05485: MPMX19_05485 - hypothetical protein, at 185,526 to 185,969 _05485 MPMX19_05486: MPMX19_05486 - Flavin-dependent monooxygenase, at 186,006 to 187,148 _05486 Position (kb) 184 185 186Strain fitness (log2 ratio) -2 -1 0 1 2at 183.932 kb on + strand, within MPMX19_05480at 183.933 kb on - strand, within MPMX19_05480at 183.947 kb on + strand, within MPMX19_05480at 183.947 kb on + strand, within MPMX19_05480at 183.947 kb on + strand, within MPMX19_05480at 183.947 kb on + strand, within MPMX19_05480at 183.947 kb on + strand, within MPMX19_05480at 183.947 kb on + strand, within MPMX19_05480at 183.947 kb on + strand, within MPMX19_05480at 183.948 kb on - strand, within MPMX19_05480at 183.948 kb on - strand, within MPMX19_05480at 183.948 kb on - strand, within MPMX19_05480at 183.948 kb on - strand, within MPMX19_05480at 184.073 kb on + strand, within MPMX19_05480at 184.073 kb on + strand, within MPMX19_05480at 184.073 kb on + strand, within MPMX19_05480at 184.073 kb on + strand, within MPMX19_05480at 184.073 kb on + strand, within MPMX19_05480at 184.073 kb on + strand, within MPMX19_05480at 184.073 kb on + strand, within MPMX19_05480at 184.073 kb on + strand, within MPMX19_05480at 184.073 kb on + strand, within MPMX19_05480at 184.073 kb on + strand, within MPMX19_05480at 184.073 kb on + strand, within MPMX19_05480at 184.073 kb on + strand, within MPMX19_05480at 184.073 kb on + strand, within MPMX19_05480at 184.073 kb on + strand, within MPMX19_05480at 184.073 kb on + strand, within MPMX19_05480at 184.073 kb on + strand, within MPMX19_05480at 184.073 kb on + strand, within MPMX19_05480at 184.073 kb on + strand, within MPMX19_05480at 184.074 kb on - strand, within MPMX19_05480at 184.074 kb on - strand, within MPMX19_05480at 184.074 kb on - strand, within MPMX19_05480at 184.074 kb on - strand, within MPMX19_05480at 184.074 kb on - strand, within MPMX19_05480at 184.074 kb on - strand, within MPMX19_05480at 184.074 kb on - strand, within MPMX19_05480at 184.074 kb on - strand, within MPMX19_05480at 184.074 kb on - strand, within MPMX19_05480at 184.074 kb on - strand, within MPMX19_05480at 184.074 kb on - strand, within MPMX19_05480at 184.074 kb on - strand, within MPMX19_05480at 184.074 kb on - strand, within MPMX19_05480at 184.074 kb on - strand, within MPMX19_05480at 184.074 kb on - strand, within MPMX19_05480at 184.074 kb on - strand, within MPMX19_05480at 184.074 kb on - strand, within MPMX19_05480at 184.074 kb on - strand, within MPMX19_05480at 184.264 kb on + strandat 184.264 kb on + strandat 184.264 kb on + strandat 184.264 kb on + strandat 184.265 kb on - strandat 184.265 kb on - strandat 184.265 kb on - strandat 184.265 kb on - strandat 184.522 kb on - strandat 184.522 kb on - strandat 184.525 kb on + strandat 184.525 kb on + strandat 184.525 kb on + strandat 184.526 kb on - strandat 184.526 kb on - strandat 184.533 kb on + strandat 184.533 kb on + strandat 184.536 kb on + strandat 184.536 kb on + strandat 184.537 kb on - strandat 184.537 kb on - strandat 184.655 kb on + strand, within MPMX19_05482at 184.655 kb on + strand, within MPMX19_05482at 184.655 kb on + strand, within MPMX19_05482at 184.655 kb on + strand, within MPMX19_05482at 184.655 kb on + strand, within MPMX19_05482at 184.655 kb on + strand, within MPMX19_05482at 184.655 kb on + strand, within MPMX19_05482at 184.655 kb on + strand, within MPMX19_05482at 184.655 kb on + strand, within MPMX19_05482at 184.655 kb on + strand, within MPMX19_05482at 184.655 kb on + strand, within MPMX19_05482at 184.655 kb on + strand, within MPMX19_05482at 184.655 kb on + strand, within MPMX19_05482at 184.655 kb on + strand, within MPMX19_05482at 184.655 kb on + strand, within MPMX19_05482at 184.655 kb on + strand, within MPMX19_05482at 184.655 kb on + strand, within MPMX19_05482at 184.655 kb on + strand, within MPMX19_05482at 184.656 kb on - strand, within MPMX19_05482at 184.656 kb on - strand, within MPMX19_05482at 184.656 kb on - strand, within MPMX19_05482at 184.656 kb on - strand, within MPMX19_05482at 184.656 kb on - strand, within MPMX19_05482at 184.656 kb on - strand, within MPMX19_05482at 184.656 kb on - strand, within MPMX19_05482at 184.656 kb on - strand, within MPMX19_05482at 184.656 kb on - strand, within MPMX19_05482at 184.656 kb on - strand, within MPMX19_05482at 184.656 kb on - strand, within MPMX19_05482at 184.656 kb on - strand, within MPMX19_05482at 184.656 kb on - strand, within MPMX19_05482at 184.656 kb on - strand, within MPMX19_05482at 184.656 kb on - strand, within MPMX19_05482at 184.656 kb on - strand, within MPMX19_05482at 184.656 kb on - strand, within MPMX19_05482at 184.656 kb on - strand, within MPMX19_05482at 184.656 kb on - strand, within MPMX19_05482at 184.912 kb on + strandat 184.912 kb on + strandat 184.913 kb on - strandat 184.913 kb on - strandat 184.913 kb on - strandat 184.913 kb on - strandat 184.926 kb on + strand, within MPMX19_05483at 184.926 kb on + strand, within MPMX19_05483at 184.926 kb on + strand, within MPMX19_05483at 184.926 kb on + strand, within MPMX19_05483at 184.927 kb on - strand, within MPMX19_05483at 184.927 kb on - strand, within MPMX19_05483at 184.927 kb on - strand, within MPMX19_05483at 184.927 kb on - strand, within MPMX19_05483at 184.972 kb on + strand, within MPMX19_05483at 184.972 kb on + strand, within MPMX19_05483at 184.972 kb on + strand, within MPMX19_05483at 184.972 kb on + strand, within MPMX19_05483at 185.023 kb on + strand, within MPMX19_05483at 185.023 kb on + strand, within MPMX19_05483at 185.023 kb on + strand, within MPMX19_05483at 185.023 kb on + strand, within MPMX19_05483at 185.023 kb on + strand, within MPMX19_05483at 185.024 kb on - strand, within MPMX19_05483at 185.204 kb on + strand, within MPMX19_05484at 185.227 kb on + strand, within MPMX19_05484at 185.227 kb on + strand, within MPMX19_05484at 185.228 kb on - strand, within MPMX19_05484at 185.228 kb on - strand, within MPMX19_05484at 185.228 kb on - strand, within MPMX19_05484at 185.228 kb on - strand, within MPMX19_05484at 185.262 kb on - strand, within MPMX19_05484at 185.367 kb on + strand, within MPMX19_05484at 185.367 kb on + strand, within MPMX19_05484at 185.367 kb on + strand, within MPMX19_05484at 185.367 kb on + strand, within MPMX19_05484at 185.367 kb on + strand, within MPMX19_05484at 185.367 kb on + strand, within MPMX19_05484at 185.367 kb on + strand, within MPMX19_05484at 185.367 kb on + strand, within MPMX19_05484at 185.367 kb on + strand, within MPMX19_05484at 185.367 kb on + strand, within MPMX19_05484at 185.367 kb on + strand, within MPMX19_05484at 185.367 kb on + strand, within MPMX19_05484at 185.367 kb on + strand, within MPMX19_05484at 185.367 kb on + strand, within MPMX19_05484at 185.367 kb on + strand, within MPMX19_05484at 185.367 kb on + strand, within MPMX19_05484at 185.367 kb on + strand, within MPMX19_05484at 185.367 kb on + strand, within MPMX19_05484at 185.368 kb on - strand, within MPMX19_05484at 185.368 kb on - strand, within MPMX19_05484at 185.368 kb on - strand, within MPMX19_05484at 185.368 kb on - strand, within MPMX19_05484at 185.368 kb on - strand, within MPMX19_05484at 185.368 kb on - strand, within MPMX19_05484at 185.368 kb on - strand, within MPMX19_05484at 185.368 kb on - strand, within MPMX19_05484at 185.532 kb on + strandat 185.532 kb on + strandat 185.532 kb on + strandat 185.532 kb on + strandat 185.532 kb on + strandat 185.532 kb on + strandat 185.532 kb on + strandat 185.532 kb on + strandat 185.532 kb on + strandat 185.532 kb on + strandat 185.532 kb on + strandat 185.532 kb on + strandat 185.532 kb on + strandat 185.532 kb on + strandat 185.532 kb on + strandat 185.532 kb on + strandat 185.532 kb on + strandat 185.532 kb on + strandat 185.532 kb on + strandat 185.532 kb on + strandat 185.532 kb on + strandat 185.532 kb on + strandat 185.532 kb on + strandat 185.532 kb on + strandat 185.533 kb on - strandat 185.533 kb on - strandat 185.533 kb on - strandat 185.533 kb on - strandat 185.533 kb on - strandat 185.533 kb on - strandat 185.533 kb on - strandat 185.533 kb on - strandat 185.533 kb on - strandat 186.148 kb on + strand, within MPMX19_05486at 186.148 kb on + strand, within MPMX19_05486at 186.148 kb on + strand, within MPMX19_05486at 186.149 kb on - strand, within MPMX19_05486at 186.149 kb on - strand, within MPMX19_05486

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Per-strain Table

Position Strand Gene LocusTag Fraction NF
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183,932 + MPMX19_05480 0.70 -0.3
183,933 - MPMX19_05480 0.70 -0.9
183,947 + MPMX19_05480 0.71 -0.8
183,947 + MPMX19_05480 0.71 +0.2
183,947 + MPMX19_05480 0.71 +0.6
183,947 + MPMX19_05480 0.71 +0.5
183,947 + MPMX19_05480 0.71 -0.1
183,947 + MPMX19_05480 0.71 +0.2
183,947 + MPMX19_05480 0.71 +1.1
183,948 - MPMX19_05480 0.71 +0.2
183,948 - MPMX19_05480 0.71 -1.2
183,948 - MPMX19_05480 0.71 -0.6
183,948 - MPMX19_05480 0.71 -1.0
184,073 + MPMX19_05480 0.82 -2.1
184,073 + MPMX19_05480 0.82 -0.9
184,073 + MPMX19_05480 0.82 +0.1
184,073 + MPMX19_05480 0.82 -0.2
184,073 + MPMX19_05480 0.82 -0.2
184,073 + MPMX19_05480 0.82 -1.1
184,073 + MPMX19_05480 0.82 -0.2
184,073 + MPMX19_05480 0.82 +0.3
184,073 + MPMX19_05480 0.82 -1.9
184,073 + MPMX19_05480 0.82 -0.2
184,073 + MPMX19_05480 0.82 +0.6
184,073 + MPMX19_05480 0.82 -0.5
184,073 + MPMX19_05480 0.82 -0.8
184,073 + MPMX19_05480 0.82 -0.6
184,073 + MPMX19_05480 0.82 +0.8
184,073 + MPMX19_05480 0.82 -0.4
184,073 + MPMX19_05480 0.82 -1.6
184,073 + MPMX19_05480 0.82 +0.0
184,074 - MPMX19_05480 0.82 -1.2
184,074 - MPMX19_05480 0.82 -0.1
184,074 - MPMX19_05480 0.82 -0.2
184,074 - MPMX19_05480 0.82 -0.4
184,074 - MPMX19_05480 0.82 -0.6
184,074 - MPMX19_05480 0.82 -1.6
184,074 - MPMX19_05480 0.82 -0.3
184,074 - MPMX19_05480 0.82 -1.0
184,074 - MPMX19_05480 0.82 +1.1
184,074 - MPMX19_05480 0.82 +1.0
184,074 - MPMX19_05480 0.82 +1.1
184,074 - MPMX19_05480 0.82 -0.8
184,074 - MPMX19_05480 0.82 +0.1
184,074 - MPMX19_05480 0.82 +0.4
184,074 - MPMX19_05480 0.82 -1.6
184,074 - MPMX19_05480 0.82 -1.4
184,074 - MPMX19_05480 0.82 +1.2
184,074 - MPMX19_05480 0.82 +1.8
184,264 + +0.3
184,264 + -0.2
184,264 + -1.6
184,264 + -0.9
184,265 - -0.8
184,265 - +1.2
184,265 - +0.0
184,265 - -1.9
184,522 - +0.2
184,522 - -0.2
184,525 + -0.7
184,525 + -1.2
184,525 + +0.9
184,526 - -0.8
184,526 - -0.2
184,533 + +0.6
184,533 + +1.8
184,536 + -0.7
184,536 + -0.5
184,537 - -1.1
184,537 - -0.3
184,655 + MPMX19_05482 0.30 +1.0
184,655 + MPMX19_05482 0.30 +0.8
184,655 + MPMX19_05482 0.30 -1.9
184,655 + MPMX19_05482 0.30 -1.2
184,655 + MPMX19_05482 0.30 -0.2
184,655 + MPMX19_05482 0.30 -1.2
184,655 + MPMX19_05482 0.30 +0.2
184,655 + MPMX19_05482 0.30 -0.2
184,655 + MPMX19_05482 0.30 -0.2
184,655 + MPMX19_05482 0.30 -1.1
184,655 + MPMX19_05482 0.30 -0.4
184,655 + MPMX19_05482 0.30 -0.2
184,655 + MPMX19_05482 0.30 -1.8
184,655 + MPMX19_05482 0.30 +1.1
184,655 + MPMX19_05482 0.30 +0.2
184,655 + MPMX19_05482 0.30 -1.6
184,655 + MPMX19_05482 0.30 -0.3
184,655 + MPMX19_05482 0.30 +0.2
184,656 - MPMX19_05482 0.31 -1.6
184,656 - MPMX19_05482 0.31 -0.6
184,656 - MPMX19_05482 0.31 -0.6
184,656 - MPMX19_05482 0.31 -0.7
184,656 - MPMX19_05482 0.31 -2.1
184,656 - MPMX19_05482 0.31 +0.2
184,656 - MPMX19_05482 0.31 -0.6
184,656 - MPMX19_05482 0.31 -1.1
184,656 - MPMX19_05482 0.31 -0.1
184,656 - MPMX19_05482 0.31 +2.4
184,656 - MPMX19_05482 0.31 -0.3
184,656 - MPMX19_05482 0.31 -1.7
184,656 - MPMX19_05482 0.31 +0.5
184,656 - MPMX19_05482 0.31 -0.4
184,656 - MPMX19_05482 0.31 -0.1
184,656 - MPMX19_05482 0.31 -0.7
184,656 - MPMX19_05482 0.31 +0.8
184,656 - MPMX19_05482 0.31 +0.9
184,656 - MPMX19_05482 0.31 -1.2
184,912 + +0.8
184,912 + -0.2
184,913 - -0.6
184,913 - -0.6
184,913 - -0.1
184,913 - -0.6
184,926 + MPMX19_05483 0.12 +0.4
184,926 + MPMX19_05483 0.12 +0.6
184,926 + MPMX19_05483 0.12 +0.9
184,926 + MPMX19_05483 0.12 -0.6
184,927 - MPMX19_05483 0.12 +0.6
184,927 - MPMX19_05483 0.12 -1.2
184,927 - MPMX19_05483 0.12 +1.2
184,927 - MPMX19_05483 0.12 +0.2
184,972 + MPMX19_05483 0.30 -1.7
184,972 + MPMX19_05483 0.30 +0.8
184,972 + MPMX19_05483 0.30 +0.8
184,972 + MPMX19_05483 0.30 +0.8
185,023 + MPMX19_05483 0.49 -0.9
185,023 + MPMX19_05483 0.49 -1.6
185,023 + MPMX19_05483 0.49 -2.2
185,023 + MPMX19_05483 0.49 -0.3
185,023 + MPMX19_05483 0.49 -1.8
185,024 - MPMX19_05483 0.49 +0.7
185,204 + MPMX19_05484 0.10 -0.1
185,227 + MPMX19_05484 0.17 +0.4
185,227 + MPMX19_05484 0.17 +0.3
185,228 - MPMX19_05484 0.17 +0.5
185,228 - MPMX19_05484 0.17 +0.4
185,228 - MPMX19_05484 0.17 -1.6
185,228 - MPMX19_05484 0.17 -0.7
185,262 - MPMX19_05484 0.27 +0.6
185,367 + MPMX19_05484 0.57 -1.1
185,367 + MPMX19_05484 0.57 +0.1
185,367 + MPMX19_05484 0.57 +0.9
185,367 + MPMX19_05484 0.57 +0.8
185,367 + MPMX19_05484 0.57 +0.4
185,367 + MPMX19_05484 0.57 -1.3
185,367 + MPMX19_05484 0.57 +0.4
185,367 + MPMX19_05484 0.57 -0.3
185,367 + MPMX19_05484 0.57 +0.0
185,367 + MPMX19_05484 0.57 +0.7
185,367 + MPMX19_05484 0.57 -0.7
185,367 + MPMX19_05484 0.57 -0.1
185,367 + MPMX19_05484 0.57 +0.1
185,367 + MPMX19_05484 0.57 +0.0
185,367 + MPMX19_05484 0.57 -0.4
185,367 + MPMX19_05484 0.57 +0.4
185,367 + MPMX19_05484 0.57 -1.7
185,367 + MPMX19_05484 0.57 -0.6
185,368 - MPMX19_05484 0.57 -1.7
185,368 - MPMX19_05484 0.57 +0.3
185,368 - MPMX19_05484 0.57 -1.4
185,368 - MPMX19_05484 0.57 -1.6
185,368 - MPMX19_05484 0.57 +0.2
185,368 - MPMX19_05484 0.57 -0.2
185,368 - MPMX19_05484 0.57 +0.4
185,368 - MPMX19_05484 0.57 +0.6
185,532 + -1.1
185,532 + -0.2
185,532 + -1.9
185,532 + +0.1
185,532 + -1.2
185,532 + -0.4
185,532 + +0.9
185,532 + +0.4
185,532 + +0.3
185,532 + -0.1
185,532 + +0.2
185,532 + -0.8
185,532 + -0.1
185,532 + +1.3
185,532 + +0.9
185,532 + -1.5
185,532 + -1.6
185,532 + -1.2
185,532 + +0.3
185,532 + -0.6
185,532 + +0.9
185,532 + -0.6
185,532 + +0.2
185,532 + -1.2
185,533 - -0.9
185,533 - -1.1
185,533 - -0.6
185,533 - +0.0
185,533 - +0.2
185,533 - +0.4
185,533 - -0.4
185,533 - -1.2
185,533 - -1.4
186,148 + MPMX19_05486 0.12 -1.4
186,148 + MPMX19_05486 0.12 +0.2
186,148 + MPMX19_05486 0.12 -0.1
186,149 - MPMX19_05486 0.13 -0.4
186,149 - MPMX19_05486 0.13 -2.2

Or see this region's nucleotide sequence