Experiment: NF
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_05435 and MPMX19_05436 are separated by 85 nucleotides MPMX19_05436 and MPMX19_05437 are separated by 7 nucleotides MPMX19_05437 and MPMX19_05438 overlap by 8 nucleotides MPMX19_05438 and MPMX19_05439 are separated by 22 nucleotides
MPMX19_05435: MPMX19_05435 - L-threo-3-hydroxyaspartate ammonia-lyase, at 126,042 to 127,058
_05435
MPMX19_05436: MPMX19_05436 - putative isomerase YddE, at 127,144 to 127,950
_05436
MPMX19_05437: MPMX19_05437 - hypothetical protein, at 127,958 to 128,344
_05437
MPMX19_05438: MPMX19_05438 - hypothetical protein, at 128,337 to 128,681
_05438
MPMX19_05439: MPMX19_05439 - hypothetical protein, at 128,704 to 129,723
_05439
Position (kb) 127
128 Strain fitness (log2 ratio) -2
-1
0
1
2 at 126.255 kb on + strand, within MPMX19_05435 at 126.255 kb on + strand, within MPMX19_05435 at 126.255 kb on + strand, within MPMX19_05435 at 126.255 kb on + strand, within MPMX19_05435 at 126.255 kb on + strand, within MPMX19_05435 at 126.255 kb on + strand, within MPMX19_05435 at 126.255 kb on + strand, within MPMX19_05435 at 126.255 kb on + strand, within MPMX19_05435 at 126.256 kb on - strand, within MPMX19_05435 at 126.256 kb on - strand, within MPMX19_05435 at 126.256 kb on - strand, within MPMX19_05435 at 126.256 kb on - strand, within MPMX19_05435 at 126.256 kb on - strand, within MPMX19_05435 at 126.309 kb on + strand, within MPMX19_05435 at 126.310 kb on - strand, within MPMX19_05435 at 126.310 kb on - strand, within MPMX19_05435 at 126.447 kb on + strand, within MPMX19_05435 at 126.447 kb on + strand, within MPMX19_05435 at 126.447 kb on + strand, within MPMX19_05435 at 126.447 kb on + strand, within MPMX19_05435 at 126.447 kb on + strand, within MPMX19_05435 at 126.448 kb on - strand, within MPMX19_05435 at 126.448 kb on - strand, within MPMX19_05435 at 126.448 kb on - strand, within MPMX19_05435 at 126.448 kb on - strand, within MPMX19_05435 at 126.448 kb on - strand, within MPMX19_05435 at 126.448 kb on - strand, within MPMX19_05435 at 126.448 kb on - strand, within MPMX19_05435 at 126.456 kb on + strand, within MPMX19_05435 at 126.456 kb on + strand, within MPMX19_05435 at 126.456 kb on + strand, within MPMX19_05435 at 126.457 kb on - strand, within MPMX19_05435 at 127.128 kb on + strand at 127.129 kb on - strand at 127.129 kb on - strand at 127.129 kb on - strand at 127.129 kb on - strand at 127.129 kb on - strand at 127.129 kb on - strand at 127.129 kb on - strand at 127.174 kb on + strand at 127.174 kb on + strand at 127.174 kb on + strand at 127.174 kb on + strand at 127.174 kb on + strand at 127.174 kb on + strand at 127.174 kb on + strand at 127.174 kb on + strand at 127.174 kb on + strand at 127.174 kb on + strand at 127.174 kb on + strand at 127.175 kb on - strand at 127.175 kb on - strand at 127.175 kb on - strand at 127.493 kb on - strand, within MPMX19_05436 at 127.603 kb on + strand, within MPMX19_05436 at 127.603 kb on + strand, within MPMX19_05436 at 127.603 kb on + strand, within MPMX19_05436 at 127.603 kb on + strand, within MPMX19_05436 at 127.603 kb on + strand, within MPMX19_05436 at 127.603 kb on + strand, within MPMX19_05436 at 127.603 kb on + strand, within MPMX19_05436 at 127.603 kb on + strand, within MPMX19_05436 at 127.603 kb on + strand, within MPMX19_05436 at 127.604 kb on - strand, within MPMX19_05436 at 127.604 kb on - strand, within MPMX19_05436 at 127.604 kb on - strand, within MPMX19_05436 at 127.615 kb on + strand, within MPMX19_05436 at 127.616 kb on - strand, within MPMX19_05436 at 127.653 kb on + strand, within MPMX19_05436 at 127.804 kb on + strand, within MPMX19_05436 at 127.804 kb on + strand, within MPMX19_05436 at 127.804 kb on + strand, within MPMX19_05436 at 127.805 kb on - strand, within MPMX19_05436 at 127.805 kb on - strand, within MPMX19_05436 at 127.805 kb on - strand, within MPMX19_05436 at 127.924 kb on + strand at 127.924 kb on + strand at 127.924 kb on + strand at 127.924 kb on + strand at 127.924 kb on + strand at 127.924 kb on + strand at 127.924 kb on + strand at 127.924 kb on + strand at 127.925 kb on - strand at 127.925 kb on - strand at 127.925 kb on - strand at 127.925 kb on - strand at 127.925 kb on - strand at 127.925 kb on - strand at 127.925 kb on - strand at 128.057 kb on + strand, within MPMX19_05437 at 128.057 kb on + strand, within MPMX19_05437 at 128.057 kb on + strand, within MPMX19_05437 at 128.057 kb on + strand, within MPMX19_05437 at 128.057 kb on + strand, within MPMX19_05437 at 128.057 kb on + strand, within MPMX19_05437 at 128.057 kb on + strand, within MPMX19_05437 at 128.057 kb on + strand, within MPMX19_05437 at 128.058 kb on - strand, within MPMX19_05437 at 128.058 kb on - strand, within MPMX19_05437 at 128.058 kb on - strand, within MPMX19_05437 at 128.058 kb on - strand, within MPMX19_05437 at 128.058 kb on - strand, within MPMX19_05437 at 128.058 kb on - strand, within MPMX19_05437 at 128.084 kb on + strand, within MPMX19_05437 at 128.084 kb on + strand, within MPMX19_05437 at 128.084 kb on + strand, within MPMX19_05437 at 128.085 kb on - strand, within MPMX19_05437 at 128.168 kb on + strand, within MPMX19_05437 at 128.168 kb on + strand, within MPMX19_05437 at 128.168 kb on + strand, within MPMX19_05437 at 128.168 kb on + strand, within MPMX19_05437 at 128.168 kb on + strand, within MPMX19_05437 at 128.168 kb on + strand, within MPMX19_05437 at 128.168 kb on + strand, within MPMX19_05437 at 128.168 kb on + strand, within MPMX19_05437 at 128.168 kb on + strand, within MPMX19_05437 at 128.168 kb on + strand, within MPMX19_05437 at 128.168 kb on + strand, within MPMX19_05437 at 128.168 kb on + strand, within MPMX19_05437 at 128.168 kb on + strand, within MPMX19_05437 at 128.168 kb on + strand, within MPMX19_05437 at 128.169 kb on - strand, within MPMX19_05437 at 128.169 kb on - strand, within MPMX19_05437 at 128.169 kb on - strand, within MPMX19_05437 at 128.169 kb on - strand, within MPMX19_05437 at 128.169 kb on - strand, within MPMX19_05437 at 128.169 kb on - strand, within MPMX19_05437 at 128.169 kb on - strand, within MPMX19_05437 at 128.169 kb on - strand, within MPMX19_05437 at 128.169 kb on - strand, within MPMX19_05437 at 128.169 kb on - strand, within MPMX19_05437 at 128.169 kb on - strand, within MPMX19_05437 at 128.169 kb on - strand, within MPMX19_05437 at 128.169 kb on - strand, within MPMX19_05437 at 128.169 kb on - strand, within MPMX19_05437 at 128.169 kb on - strand, within MPMX19_05437 at 128.169 kb on - strand, within MPMX19_05437 at 128.174 kb on + strand, within MPMX19_05437 at 128.174 kb on + strand, within MPMX19_05437 at 128.174 kb on + strand, within MPMX19_05437 at 128.174 kb on + strand, within MPMX19_05437 at 128.174 kb on + strand, within MPMX19_05437 at 128.174 kb on + strand, within MPMX19_05437 at 128.174 kb on + strand, within MPMX19_05437 at 128.174 kb on + strand, within MPMX19_05437 at 128.174 kb on + strand, within MPMX19_05437 at 128.174 kb on + strand, within MPMX19_05437 at 128.174 kb on + strand, within MPMX19_05437 at 128.174 kb on + strand, within MPMX19_05437 at 128.174 kb on + strand, within MPMX19_05437 at 128.174 kb on + strand, within MPMX19_05437 at 128.174 kb on + strand, within MPMX19_05437 at 128.174 kb on + strand, within MPMX19_05437 at 128.174 kb on + strand, within MPMX19_05437 at 128.175 kb on - strand, within MPMX19_05437 at 128.175 kb on - strand, within MPMX19_05437 at 128.175 kb on - strand, within MPMX19_05437 at 128.175 kb on - strand, within MPMX19_05437 at 128.175 kb on - strand, within MPMX19_05437 at 128.175 kb on - strand, within MPMX19_05437 at 128.175 kb on - strand, within MPMX19_05437 at 128.175 kb on - strand, within MPMX19_05437 at 128.175 kb on - strand, within MPMX19_05437 at 128.175 kb on - strand, within MPMX19_05437 at 128.348 kb on + strand at 128.348 kb on + strand at 128.348 kb on + strand at 128.349 kb on - strand at 128.349 kb on - strand at 128.349 kb on - strand at 128.349 kb on - strand at 128.349 kb on - strand at 128.367 kb on + strand at 128.367 kb on + strand at 128.367 kb on + strand at 128.367 kb on + strand at 128.368 kb on - strand at 128.604 kb on + strand, within MPMX19_05438 at 128.604 kb on + strand, within MPMX19_05438 at 128.604 kb on + strand, within MPMX19_05438 at 128.605 kb on - strand, within MPMX19_05438 at 128.605 kb on - strand, within MPMX19_05438 at 128.620 kb on - strand, within MPMX19_05438 at 128.620 kb on - strand, within MPMX19_05438 at 128.667 kb on + strand at 128.667 kb on + strand at 128.667 kb on + strand at 128.667 kb on + strand at 128.667 kb on + strand at 128.667 kb on + strand at 128.667 kb on + strand at 128.667 kb on + strand at 128.667 kb on + strand at 128.667 kb on + strand at 128.667 kb on + strand at 128.667 kb on + strand at 128.667 kb on + strand at 128.667 kb on + strand at 128.667 kb on + strand at 128.667 kb on + strand at 128.667 kb on + strand at 128.668 kb on - strand at 128.668 kb on - strand at 128.668 kb on - strand at 128.668 kb on - strand at 128.668 kb on - strand at 128.668 kb on - strand at 128.668 kb on - strand at 128.668 kb on - strand at 128.668 kb on - strand at 128.668 kb on - strand at 128.668 kb on - strand at 128.668 kb on - strand at 128.668 kb on - strand at 128.668 kb on - strand at 128.679 kb on + strand at 128.679 kb on + strand at 128.679 kb on + strand at 128.679 kb on + strand at 128.680 kb on - strand at 128.680 kb on - strand at 128.680 kb on - strand at 128.801 kb on + strand at 128.802 kb on - strand at 128.802 kb on - strand at 128.802 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NF remove 126,255 + MPMX19_05435 0.21 -0.6 126,255 + MPMX19_05435 0.21 -0.1 126,255 + MPMX19_05435 0.21 +0.0 126,255 + MPMX19_05435 0.21 +0.6 126,255 + MPMX19_05435 0.21 -0.6 126,255 + MPMX19_05435 0.21 +0.2 126,255 + MPMX19_05435 0.21 -2.2 126,255 + MPMX19_05435 0.21 -0.1 126,256 - MPMX19_05435 0.21 +0.8 126,256 - MPMX19_05435 0.21 -0.1 126,256 - MPMX19_05435 0.21 +0.8 126,256 - MPMX19_05435 0.21 -0.1 126,256 - MPMX19_05435 0.21 -1.7 126,309 + MPMX19_05435 0.26 +0.7 126,310 - MPMX19_05435 0.26 +0.6 126,310 - MPMX19_05435 0.26 +1.4 126,447 + MPMX19_05435 0.40 -0.4 126,447 + MPMX19_05435 0.40 -1.5 126,447 + MPMX19_05435 0.40 -0.1 126,447 + MPMX19_05435 0.40 -1.1 126,447 + MPMX19_05435 0.40 -1.2 126,448 - MPMX19_05435 0.40 +0.3 126,448 - MPMX19_05435 0.40 -1.6 126,448 - MPMX19_05435 0.40 -1.2 126,448 - MPMX19_05435 0.40 -0.3 126,448 - MPMX19_05435 0.40 +0.4 126,448 - MPMX19_05435 0.40 -0.6 126,448 - MPMX19_05435 0.40 -1.7 126,456 + MPMX19_05435 0.41 -2.1 126,456 + MPMX19_05435 0.41 -1.6 126,456 + MPMX19_05435 0.41 +0.0 126,457 - MPMX19_05435 0.41 +0.6 127,128 + -0.2 127,129 - -2.2 127,129 - -1.4 127,129 - -0.4 127,129 - -0.8 127,129 - -1.2 127,129 - +0.0 127,129 - -2.4 127,174 + +0.1 127,174 + -0.4 127,174 + -0.7 127,174 + -0.9 127,174 + +0.2 127,174 + +0.3 127,174 + -0.1 127,174 + -0.2 127,174 + -0.3 127,174 + -0.1 127,174 + -0.6 127,175 - -0.3 127,175 - -1.2 127,175 - -1.2 127,493 - MPMX19_05436 0.43 -0.9 127,603 + MPMX19_05436 0.57 -0.5 127,603 + MPMX19_05436 0.57 -0.6 127,603 + MPMX19_05436 0.57 -0.7 127,603 + MPMX19_05436 0.57 -1.7 127,603 + MPMX19_05436 0.57 -2.7 127,603 + MPMX19_05436 0.57 -0.8 127,603 + MPMX19_05436 0.57 +0.1 127,603 + MPMX19_05436 0.57 -2.2 127,603 + MPMX19_05436 0.57 -1.4 127,604 - MPMX19_05436 0.57 -0.6 127,604 - MPMX19_05436 0.57 -0.4 127,604 - MPMX19_05436 0.57 +0.8 127,615 + MPMX19_05436 0.58 +1.6 127,616 - MPMX19_05436 0.58 -1.2 127,653 + MPMX19_05436 0.63 +0.0 127,804 + MPMX19_05436 0.82 -0.9 127,804 + MPMX19_05436 0.82 -0.3 127,804 + MPMX19_05436 0.82 -0.9 127,805 - MPMX19_05436 0.82 -0.7 127,805 - MPMX19_05436 0.82 -0.7 127,805 - MPMX19_05436 0.82 -0.3 127,924 + -0.4 127,924 + +1.3 127,924 + +0.3 127,924 + -0.8 127,924 + -0.2 127,924 + -0.3 127,924 + -0.7 127,924 + -0.7 127,925 - +0.2 127,925 - -2.2 127,925 - -0.8 127,925 - -1.5 127,925 - -1.1 127,925 - -0.5 127,925 - -0.4 128,057 + MPMX19_05437 0.26 -0.6 128,057 + MPMX19_05437 0.26 -0.1 128,057 + MPMX19_05437 0.26 -1.0 128,057 + MPMX19_05437 0.26 -0.2 128,057 + MPMX19_05437 0.26 -1.0 128,057 + MPMX19_05437 0.26 +0.0 128,057 + MPMX19_05437 0.26 +0.1 128,057 + MPMX19_05437 0.26 -1.9 128,058 - MPMX19_05437 0.26 -0.2 128,058 - MPMX19_05437 0.26 -0.8 128,058 - MPMX19_05437 0.26 +0.5 128,058 - MPMX19_05437 0.26 -0.6 128,058 - MPMX19_05437 0.26 -0.6 128,058 - MPMX19_05437 0.26 -0.9 128,084 + MPMX19_05437 0.33 +0.5 128,084 + MPMX19_05437 0.33 -0.8 128,084 + MPMX19_05437 0.33 -0.9 128,085 - MPMX19_05437 0.33 +0.3 128,168 + MPMX19_05437 0.54 +0.9 128,168 + MPMX19_05437 0.54 -0.5 128,168 + MPMX19_05437 0.54 -0.4 128,168 + MPMX19_05437 0.54 +0.1 128,168 + MPMX19_05437 0.54 -1.1 128,168 + MPMX19_05437 0.54 -1.1 128,168 + MPMX19_05437 0.54 +0.3 128,168 + MPMX19_05437 0.54 -0.4 128,168 + MPMX19_05437 0.54 +0.3 128,168 + MPMX19_05437 0.54 -0.6 128,168 + MPMX19_05437 0.54 -1.3 128,168 + MPMX19_05437 0.54 -0.2 128,168 + MPMX19_05437 0.54 -0.8 128,168 + MPMX19_05437 0.54 -0.2 128,169 - MPMX19_05437 0.55 -0.2 128,169 - MPMX19_05437 0.55 -0.6 128,169 - MPMX19_05437 0.55 +0.4 128,169 - MPMX19_05437 0.55 -0.7 128,169 - MPMX19_05437 0.55 -0.4 128,169 - MPMX19_05437 0.55 +0.6 128,169 - MPMX19_05437 0.55 -0.6 128,169 - MPMX19_05437 0.55 +0.3 128,169 - MPMX19_05437 0.55 -0.9 128,169 - MPMX19_05437 0.55 +2.3 128,169 - MPMX19_05437 0.55 -0.1 128,169 - MPMX19_05437 0.55 +0.5 128,169 - MPMX19_05437 0.55 -0.9 128,169 - MPMX19_05437 0.55 +0.3 128,169 - MPMX19_05437 0.55 -0.2 128,169 - MPMX19_05437 0.55 +0.6 128,174 + MPMX19_05437 0.56 +0.3 128,174 + MPMX19_05437 0.56 -0.0 128,174 + MPMX19_05437 0.56 -1.6 128,174 + MPMX19_05437 0.56 +1.2 128,174 + MPMX19_05437 0.56 -0.2 128,174 + MPMX19_05437 0.56 -1.1 128,174 + MPMX19_05437 0.56 +1.4 128,174 + MPMX19_05437 0.56 +0.8 128,174 + MPMX19_05437 0.56 -0.6 128,174 + MPMX19_05437 0.56 +0.2 128,174 + MPMX19_05437 0.56 -1.8 128,174 + MPMX19_05437 0.56 +0.3 128,174 + MPMX19_05437 0.56 +0.4 128,174 + MPMX19_05437 0.56 -0.1 128,174 + MPMX19_05437 0.56 -0.7 128,174 + MPMX19_05437 0.56 -0.1 128,174 + MPMX19_05437 0.56 +1.0 128,175 - MPMX19_05437 0.56 -0.6 128,175 - MPMX19_05437 0.56 -0.4 128,175 - MPMX19_05437 0.56 -0.0 128,175 - MPMX19_05437 0.56 -2.1 128,175 - MPMX19_05437 0.56 -1.1 128,175 - MPMX19_05437 0.56 -1.3 128,175 - MPMX19_05437 0.56 -0.7 128,175 - MPMX19_05437 0.56 +0.8 128,175 - MPMX19_05437 0.56 +0.8 128,175 - MPMX19_05437 0.56 -0.2 128,348 + +0.5 128,348 + -1.6 128,348 + +0.9 128,349 - -1.1 128,349 - -1.4 128,349 - +0.1 128,349 - -1.2 128,349 - -1.2 128,367 + +0.3 128,367 + -1.4 128,367 + -0.4 128,367 + -1.7 128,368 - -0.8 128,604 + MPMX19_05438 0.77 -0.5 128,604 + MPMX19_05438 0.77 -0.2 128,604 + MPMX19_05438 0.77 +1.2 128,605 - MPMX19_05438 0.78 -0.4 128,605 - MPMX19_05438 0.78 -0.9 128,620 - MPMX19_05438 0.82 -0.7 128,620 - MPMX19_05438 0.82 -0.9 128,667 + +0.2 128,667 + -0.4 128,667 + -1.1 128,667 + -0.4 128,667 + -0.2 128,667 + -0.1 128,667 + -0.6 128,667 + +0.7 128,667 + -0.2 128,667 + -0.3 128,667 + +0.4 128,667 + +0.3 128,667 + -0.4 128,667 + +0.9 128,667 + +0.8 128,667 + -0.3 128,667 + +0.2 128,668 - +0.2 128,668 - -0.1 128,668 - +0.7 128,668 - -1.1 128,668 - -1.1 128,668 - -2.3 128,668 - -0.4 128,668 - +0.8 128,668 - -1.5 128,668 - -0.3 128,668 - -0.9 128,668 - -0.3 128,668 - +0.3 128,668 - +1.2 128,679 + +0.3 128,679 + -0.6 128,679 + -0.4 128,679 + +0.0 128,680 - -0.6 128,680 - -0.6 128,680 - -1.1 128,801 + -1.1 128,802 - -0.2 128,802 - -2.1 128,802 - +0.4
Or see this region's nucleotide sequence