Experiment: NF
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_05386 and MPMX19_05387 are separated by 425 nucleotides MPMX19_05387 and MPMX19_05388 are separated by 73 nucleotides MPMX19_05388 and MPMX19_05389 are separated by 42 nucleotides
MPMX19_05386: MPMX19_05386 - hypothetical protein, at 61,362 to 63,626
_05386
MPMX19_05387: MPMX19_05387 - 1,4-dihydroxy-2-naphthoyl-CoA hydrolase, at 64,052 to 64,537
_05387
MPMX19_05388: MPMX19_05388 - Leucine-responsive regulatory protein, at 64,611 to 65,036
_05388
MPMX19_05389: MPMX19_05389 - Pyruvate kinase, at 65,079 to 66,572
_05389
Position (kb) 64
65 Strain fitness (log2 ratio) -2
-1
0
1
2 at 63.244 kb on + strand, within MPMX19_05386 at 63.244 kb on + strand, within MPMX19_05386 at 63.244 kb on + strand, within MPMX19_05386 at 63.244 kb on + strand, within MPMX19_05386 at 63.244 kb on + strand, within MPMX19_05386 at 63.244 kb on + strand, within MPMX19_05386 at 63.244 kb on + strand, within MPMX19_05386 at 63.244 kb on + strand, within MPMX19_05386 at 63.244 kb on + strand, within MPMX19_05386 at 63.244 kb on + strand, within MPMX19_05386 at 63.244 kb on + strand, within MPMX19_05386 at 63.244 kb on + strand, within MPMX19_05386 at 63.244 kb on + strand, within MPMX19_05386 at 63.244 kb on + strand, within MPMX19_05386 at 63.244 kb on + strand, within MPMX19_05386 at 63.244 kb on + strand, within MPMX19_05386 at 63.245 kb on - strand, within MPMX19_05386 at 63.245 kb on - strand, within MPMX19_05386 at 63.245 kb on - strand, within MPMX19_05386 at 63.245 kb on - strand, within MPMX19_05386 at 63.245 kb on - strand, within MPMX19_05386 at 63.245 kb on - strand, within MPMX19_05386 at 63.245 kb on - strand, within MPMX19_05386 at 63.245 kb on - strand, within MPMX19_05386 at 63.245 kb on - strand, within MPMX19_05386 at 63.245 kb on - strand, within MPMX19_05386 at 63.245 kb on - strand, within MPMX19_05386 at 63.245 kb on - strand, within MPMX19_05386 at 63.245 kb on - strand, within MPMX19_05386 at 63.245 kb on - strand, within MPMX19_05386 at 63.245 kb on - strand, within MPMX19_05386 at 63.245 kb on - strand, within MPMX19_05386 at 63.245 kb on - strand, within MPMX19_05386 at 63.245 kb on - strand, within MPMX19_05386 at 63.245 kb on - strand, within MPMX19_05386 at 63.337 kb on + strand, within MPMX19_05386 at 63.337 kb on + strand, within MPMX19_05386 at 63.337 kb on + strand, within MPMX19_05386 at 63.337 kb on + strand, within MPMX19_05386 at 63.337 kb on + strand, within MPMX19_05386 at 63.337 kb on + strand, within MPMX19_05386 at 63.338 kb on - strand, within MPMX19_05386 at 63.338 kb on - strand, within MPMX19_05386 at 63.338 kb on - strand, within MPMX19_05386 at 63.775 kb on + strand at 63.877 kb on - strand at 63.899 kb on - strand at 63.956 kb on - strand at 63.956 kb on - strand at 64.012 kb on + strand at 64.012 kb on + strand at 64.012 kb on + strand at 64.012 kb on + strand at 64.012 kb on + strand at 64.012 kb on + strand at 64.012 kb on + strand at 64.012 kb on + strand at 64.012 kb on + strand at 64.012 kb on + strand at 64.012 kb on + strand at 64.012 kb on + strand at 64.012 kb on + strand at 64.012 kb on + strand at 64.013 kb on - strand at 64.013 kb on - strand at 64.013 kb on - strand at 64.013 kb on - strand at 64.013 kb on - strand at 64.062 kb on - strand at 64.062 kb on - strand at 64.178 kb on + strand, within MPMX19_05387 at 64.179 kb on - strand, within MPMX19_05387 at 64.179 kb on - strand, within MPMX19_05387 at 64.191 kb on - strand, within MPMX19_05387 at 64.250 kb on + strand, within MPMX19_05387 at 64.250 kb on + strand, within MPMX19_05387 at 64.251 kb on - strand, within MPMX19_05387 at 64.251 kb on - strand, within MPMX19_05387 at 64.251 kb on - strand, within MPMX19_05387 at 64.515 kb on - strand at 64.535 kb on + strand at 64.536 kb on - strand at 64.536 kb on - strand at 64.546 kb on + strand at 64.546 kb on + strand at 64.546 kb on + strand at 64.546 kb on + strand at 64.546 kb on + strand at 64.546 kb on + strand at 64.546 kb on + strand at 64.546 kb on + strand at 64.546 kb on + strand at 64.546 kb on + strand at 64.546 kb on + strand at 64.546 kb on + strand at 64.546 kb on + strand at 64.547 kb on - strand at 64.547 kb on - strand at 64.547 kb on - strand at 64.547 kb on - strand at 64.547 kb on - strand at 64.547 kb on - strand at 64.577 kb on + strand at 64.577 kb on + strand at 64.577 kb on + strand at 64.577 kb on + strand at 64.577 kb on + strand at 64.577 kb on + strand at 64.577 kb on + strand at 64.577 kb on + strand at 64.577 kb on + strand at 64.577 kb on + strand at 64.577 kb on + strand at 64.577 kb on + strand at 64.577 kb on + strand at 64.577 kb on + strand at 64.577 kb on + strand at 64.577 kb on + strand at 64.578 kb on - strand at 64.578 kb on - strand at 64.578 kb on - strand at 64.578 kb on - strand at 64.578 kb on - strand at 64.578 kb on - strand at 64.578 kb on - strand at 64.578 kb on - strand at 64.578 kb on - strand at 64.578 kb on - strand at 64.578 kb on - strand at 64.578 kb on - strand at 64.578 kb on - strand at 64.578 kb on - strand at 64.578 kb on - strand at 64.760 kb on + strand, within MPMX19_05388 at 64.760 kb on + strand, within MPMX19_05388 at 64.760 kb on + strand, within MPMX19_05388 at 64.760 kb on + strand, within MPMX19_05388 at 64.760 kb on + strand, within MPMX19_05388 at 64.760 kb on + strand, within MPMX19_05388 at 64.761 kb on - strand, within MPMX19_05388 at 64.761 kb on - strand, within MPMX19_05388 at 64.761 kb on - strand, within MPMX19_05388 at 64.761 kb on - strand, within MPMX19_05388 at 64.761 kb on - strand, within MPMX19_05388 at 64.761 kb on - strand, within MPMX19_05388 at 64.761 kb on - strand, within MPMX19_05388 at 64.905 kb on + strand, within MPMX19_05388 at 64.905 kb on + strand, within MPMX19_05388 at 64.905 kb on + strand, within MPMX19_05388 at 64.906 kb on - strand, within MPMX19_05388 at 64.906 kb on - strand, within MPMX19_05388 at 65.230 kb on + strand, within MPMX19_05389 at 65.231 kb on - strand, within MPMX19_05389 at 65.231 kb on - strand, within MPMX19_05389 at 65.231 kb on - strand, within MPMX19_05389 at 65.231 kb on - strand, within MPMX19_05389 at 65.491 kb on + strand, within MPMX19_05389 at 65.491 kb on + strand, within MPMX19_05389 at 65.492 kb on - strand, within MPMX19_05389
Per-strain Table
Position Strand Gene LocusTag Fraction NF remove 63,244 + MPMX19_05386 0.83 -1.0 63,244 + MPMX19_05386 0.83 +0.2 63,244 + MPMX19_05386 0.83 -1.2 63,244 + MPMX19_05386 0.83 +1.2 63,244 + MPMX19_05386 0.83 +0.9 63,244 + MPMX19_05386 0.83 +0.1 63,244 + MPMX19_05386 0.83 +0.5 63,244 + MPMX19_05386 0.83 +0.1 63,244 + MPMX19_05386 0.83 -0.8 63,244 + MPMX19_05386 0.83 -1.6 63,244 + MPMX19_05386 0.83 -1.4 63,244 + MPMX19_05386 0.83 -1.1 63,244 + MPMX19_05386 0.83 -0.8 63,244 + MPMX19_05386 0.83 -0.5 63,244 + MPMX19_05386 0.83 -0.1 63,244 + MPMX19_05386 0.83 +0.5 63,245 - MPMX19_05386 0.83 -0.8 63,245 - MPMX19_05386 0.83 -0.3 63,245 - MPMX19_05386 0.83 -1.2 63,245 - MPMX19_05386 0.83 -1.1 63,245 - MPMX19_05386 0.83 -0.9 63,245 - MPMX19_05386 0.83 +0.1 63,245 - MPMX19_05386 0.83 -0.9 63,245 - MPMX19_05386 0.83 -1.2 63,245 - MPMX19_05386 0.83 -0.7 63,245 - MPMX19_05386 0.83 -1.6 63,245 - MPMX19_05386 0.83 +1.1 63,245 - MPMX19_05386 0.83 -0.8 63,245 - MPMX19_05386 0.83 +0.8 63,245 - MPMX19_05386 0.83 -0.7 63,245 - MPMX19_05386 0.83 -0.7 63,245 - MPMX19_05386 0.83 +0.1 63,245 - MPMX19_05386 0.83 -0.2 63,245 - MPMX19_05386 0.83 +0.6 63,245 - MPMX19_05386 0.83 -1.2 63,337 + MPMX19_05386 0.87 +0.1 63,337 + MPMX19_05386 0.87 -2.2 63,337 + MPMX19_05386 0.87 -0.6 63,337 + MPMX19_05386 0.87 -2.1 63,337 + MPMX19_05386 0.87 +0.3 63,337 + MPMX19_05386 0.87 -0.5 63,338 - MPMX19_05386 0.87 -1.6 63,338 - MPMX19_05386 0.87 +0.4 63,338 - MPMX19_05386 0.87 -1.1 63,775 + -1.2 63,877 - -0.6 63,899 - +0.6 63,956 - +0.2 63,956 - -0.6 64,012 + -1.6 64,012 + -0.7 64,012 + -1.1 64,012 + -1.9 64,012 + +0.4 64,012 + +0.0 64,012 + +0.5 64,012 + -1.0 64,012 + -0.9 64,012 + -0.6 64,012 + +0.3 64,012 + -1.8 64,012 + +0.2 64,012 + -0.8 64,013 - +0.8 64,013 - +2.3 64,013 - -0.2 64,013 - +0.3 64,013 - +1.3 64,062 - +0.3 64,062 - -2.2 64,178 + MPMX19_05387 0.26 -1.5 64,179 - MPMX19_05387 0.26 -2.6 64,179 - MPMX19_05387 0.26 -1.4 64,191 - MPMX19_05387 0.29 +0.3 64,250 + MPMX19_05387 0.41 +0.6 64,250 + MPMX19_05387 0.41 -1.3 64,251 - MPMX19_05387 0.41 +1.3 64,251 - MPMX19_05387 0.41 -1.8 64,251 - MPMX19_05387 0.41 -1.2 64,515 - +1.0 64,535 + +0.4 64,536 - -0.8 64,536 - +0.0 64,546 + -0.2 64,546 + -0.4 64,546 + -0.1 64,546 + -0.8 64,546 + -0.2 64,546 + +0.3 64,546 + -0.7 64,546 + -0.6 64,546 + +0.4 64,546 + +0.2 64,546 + -0.5 64,546 + -0.1 64,546 + -0.5 64,547 - -0.0 64,547 - -0.1 64,547 - -0.7 64,547 - -0.2 64,547 - +1.2 64,547 - -1.6 64,577 + -0.7 64,577 + +0.9 64,577 + -0.9 64,577 + -0.5 64,577 + -0.5 64,577 + -1.6 64,577 + -1.7 64,577 + -0.2 64,577 + -1.8 64,577 + +0.8 64,577 + -1.2 64,577 + -0.1 64,577 + -1.2 64,577 + +0.9 64,577 + -2.3 64,577 + +0.2 64,578 - -0.2 64,578 - -2.2 64,578 - -1.4 64,578 - -0.9 64,578 - -0.1 64,578 - -1.4 64,578 - -0.8 64,578 - -1.5 64,578 - +0.6 64,578 - +0.3 64,578 - -1.8 64,578 - -1.7 64,578 - -0.7 64,578 - -0.9 64,578 - -0.2 64,760 + MPMX19_05388 0.35 +1.8 64,760 + MPMX19_05388 0.35 -1.1 64,760 + MPMX19_05388 0.35 -1.3 64,760 + MPMX19_05388 0.35 -2.3 64,760 + MPMX19_05388 0.35 -0.4 64,760 + MPMX19_05388 0.35 +0.8 64,761 - MPMX19_05388 0.35 -0.6 64,761 - MPMX19_05388 0.35 +0.4 64,761 - MPMX19_05388 0.35 +0.5 64,761 - MPMX19_05388 0.35 -0.7 64,761 - MPMX19_05388 0.35 -1.1 64,761 - MPMX19_05388 0.35 -0.7 64,761 - MPMX19_05388 0.35 +0.8 64,905 + MPMX19_05388 0.69 +1.2 64,905 + MPMX19_05388 0.69 -1.2 64,905 + MPMX19_05388 0.69 +0.2 64,906 - MPMX19_05388 0.69 +1.8 64,906 - MPMX19_05388 0.69 +0.4 65,230 + MPMX19_05389 0.10 +0.2 65,231 - MPMX19_05389 0.10 -1.1 65,231 - MPMX19_05389 0.10 +0.1 65,231 - MPMX19_05389 0.10 -2.2 65,231 - MPMX19_05389 0.10 -0.9 65,491 + MPMX19_05389 0.28 -1.7 65,491 + MPMX19_05389 0.28 +0.1 65,492 - MPMX19_05389 0.28 -0.7
Or see this region's nucleotide sequence