Experiment: NF
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_05379 and MPMX19_05380 are separated by 712 nucleotides MPMX19_05380 and MPMX19_05381 are separated by 143 nucleotides
MPMX19_05379: MPMX19_05379 - hypothetical protein, at 52,826 to 54,238
_05379
MPMX19_05380: MPMX19_05380 - hypothetical protein, at 54,951 to 55,703
_05380
MPMX19_05381: MPMX19_05381 - Glycine cleavage system transcriptional activator, at 55,847 to 56,734
_05381
Position (kb) 54
55
56 Strain fitness (log2 ratio) -2
-1
0
1
2 at 54.096 kb on - strand, within MPMX19_05379 at 54.096 kb on - strand, within MPMX19_05379 at 54.096 kb on - strand, within MPMX19_05379 at 54.096 kb on - strand, within MPMX19_05379 at 54.096 kb on - strand, within MPMX19_05379 at 54.096 kb on - strand, within MPMX19_05379 at 54.096 kb on - strand, within MPMX19_05379 at 54.096 kb on - strand, within MPMX19_05379 at 54.096 kb on - strand, within MPMX19_05379 at 54.239 kb on - strand at 54.296 kb on - strand at 54.296 kb on - strand at 54.296 kb on - strand at 54.296 kb on - strand at 54.333 kb on - strand at 54.333 kb on - strand at 54.526 kb on + strand at 54.526 kb on + strand at 54.526 kb on + strand at 54.566 kb on + strand at 54.566 kb on + strand at 54.566 kb on + strand at 54.566 kb on + strand at 54.567 kb on - strand at 54.567 kb on - strand at 54.630 kb on + strand at 54.630 kb on + strand at 54.631 kb on - strand at 54.631 kb on - strand at 54.631 kb on - strand at 54.631 kb on - strand at 54.631 kb on - strand at 54.801 kb on + strand at 54.801 kb on + strand at 54.801 kb on + strand at 54.818 kb on + strand at 54.818 kb on + strand at 54.818 kb on + strand at 54.818 kb on + strand at 54.818 kb on + strand at 54.818 kb on + strand at 54.818 kb on + strand at 54.818 kb on + strand at 54.818 kb on + strand at 54.818 kb on + strand at 54.818 kb on + strand at 54.818 kb on + strand at 54.818 kb on + strand at 54.818 kb on + strand at 54.818 kb on + strand at 54.819 kb on - strand at 54.819 kb on - strand at 54.819 kb on - strand at 54.819 kb on - strand at 54.819 kb on - strand at 54.819 kb on - strand at 54.841 kb on + strand at 54.899 kb on + strand at 54.925 kb on - strand at 54.937 kb on + strand at 54.937 kb on + strand at 54.937 kb on + strand at 54.938 kb on - strand at 54.988 kb on + strand at 54.989 kb on - strand at 54.989 kb on - strand at 55.016 kb on - strand at 55.165 kb on + strand, within MPMX19_05380 at 55.165 kb on + strand, within MPMX19_05380 at 55.165 kb on + strand, within MPMX19_05380 at 55.165 kb on + strand, within MPMX19_05380 at 55.165 kb on + strand, within MPMX19_05380 at 55.165 kb on + strand, within MPMX19_05380 at 55.165 kb on + strand, within MPMX19_05380 at 55.166 kb on - strand, within MPMX19_05380 at 55.166 kb on - strand, within MPMX19_05380 at 55.166 kb on - strand, within MPMX19_05380 at 55.166 kb on - strand, within MPMX19_05380 at 55.166 kb on - strand, within MPMX19_05380 at 55.166 kb on - strand, within MPMX19_05380 at 55.166 kb on - strand, within MPMX19_05380 at 56.303 kb on + strand, within MPMX19_05381 at 56.304 kb on - strand, within MPMX19_05381 at 56.304 kb on - strand, within MPMX19_05381 at 56.470 kb on + strand, within MPMX19_05381 at 56.470 kb on + strand, within MPMX19_05381 at 56.470 kb on + strand, within MPMX19_05381 at 56.470 kb on + strand, within MPMX19_05381 at 56.470 kb on + strand, within MPMX19_05381 at 56.470 kb on + strand, within MPMX19_05381 at 56.470 kb on + strand, within MPMX19_05381 at 56.470 kb on + strand, within MPMX19_05381 at 56.470 kb on + strand, within MPMX19_05381 at 56.470 kb on + strand, within MPMX19_05381 at 56.470 kb on + strand, within MPMX19_05381 at 56.470 kb on + strand, within MPMX19_05381 at 56.471 kb on - strand, within MPMX19_05381 at 56.471 kb on - strand, within MPMX19_05381 at 56.471 kb on - strand, within MPMX19_05381 at 56.471 kb on - strand, within MPMX19_05381 at 56.471 kb on - strand, within MPMX19_05381 at 56.471 kb on - strand, within MPMX19_05381 at 56.471 kb on - strand, within MPMX19_05381 at 56.471 kb on - strand, within MPMX19_05381 at 56.471 kb on - strand, within MPMX19_05381 at 56.471 kb on - strand, within MPMX19_05381 at 56.471 kb on - strand, within MPMX19_05381 at 56.471 kb on - strand, within MPMX19_05381 at 56.471 kb on - strand, within MPMX19_05381 at 56.471 kb on - strand, within MPMX19_05381 at 56.471 kb on - strand, within MPMX19_05381 at 56.471 kb on - strand, within MPMX19_05381 at 56.471 kb on - strand, within MPMX19_05381 at 56.471 kb on - strand, within MPMX19_05381 at 56.510 kb on + strand, within MPMX19_05381 at 56.510 kb on + strand, within MPMX19_05381 at 56.510 kb on + strand, within MPMX19_05381 at 56.510 kb on + strand, within MPMX19_05381 at 56.510 kb on + strand, within MPMX19_05381 at 56.510 kb on + strand, within MPMX19_05381 at 56.510 kb on + strand, within MPMX19_05381 at 56.510 kb on + strand, within MPMX19_05381 at 56.510 kb on + strand, within MPMX19_05381 at 56.510 kb on + strand, within MPMX19_05381 at 56.510 kb on + strand, within MPMX19_05381 at 56.510 kb on + strand, within MPMX19_05381 at 56.510 kb on + strand, within MPMX19_05381 at 56.510 kb on + strand, within MPMX19_05381 at 56.510 kb on + strand, within MPMX19_05381 at 56.510 kb on + strand, within MPMX19_05381 at 56.510 kb on + strand, within MPMX19_05381 at 56.510 kb on + strand, within MPMX19_05381 at 56.510 kb on + strand, within MPMX19_05381 at 56.510 kb on + strand, within MPMX19_05381 at 56.510 kb on + strand, within MPMX19_05381 at 56.510 kb on + strand, within MPMX19_05381 at 56.510 kb on + strand, within MPMX19_05381 at 56.510 kb on + strand, within MPMX19_05381 at 56.511 kb on - strand, within MPMX19_05381 at 56.511 kb on - strand, within MPMX19_05381 at 56.511 kb on - strand, within MPMX19_05381 at 56.511 kb on - strand, within MPMX19_05381 at 56.511 kb on - strand, within MPMX19_05381 at 56.511 kb on - strand, within MPMX19_05381 at 56.511 kb on - strand, within MPMX19_05381 at 56.511 kb on - strand, within MPMX19_05381 at 56.511 kb on - strand, within MPMX19_05381 at 56.511 kb on - strand, within MPMX19_05381 at 56.511 kb on - strand, within MPMX19_05381 at 56.570 kb on + strand, within MPMX19_05381 at 56.570 kb on + strand, within MPMX19_05381 at 56.570 kb on + strand, within MPMX19_05381 at 56.570 kb on + strand, within MPMX19_05381 at 56.570 kb on + strand, within MPMX19_05381 at 56.570 kb on + strand, within MPMX19_05381 at 56.571 kb on - strand, within MPMX19_05381 at 56.571 kb on - strand, within MPMX19_05381 at 56.571 kb on - strand, within MPMX19_05381 at 56.571 kb on - strand, within MPMX19_05381 at 56.571 kb on - strand, within MPMX19_05381 at 56.571 kb on - strand, within MPMX19_05381 at 56.571 kb on - strand, within MPMX19_05381 at 56.571 kb on - strand, within MPMX19_05381 at 56.571 kb on - strand, within MPMX19_05381 at 56.571 kb on - strand, within MPMX19_05381 at 56.571 kb on - strand, within MPMX19_05381 at 56.645 kb on + strand, within MPMX19_05381 at 56.645 kb on + strand, within MPMX19_05381 at 56.645 kb on + strand, within MPMX19_05381 at 56.645 kb on + strand, within MPMX19_05381 at 56.645 kb on + strand, within MPMX19_05381 at 56.646 kb on - strand at 56.646 kb on - strand at 56.646 kb on - strand at 56.646 kb on - strand at 56.646 kb on - strand at 56.646 kb on - strand at 56.646 kb on - strand at 56.654 kb on + strand at 56.654 kb on + strand at 56.655 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NF remove 54,096 - MPMX19_05379 0.90 -0.3 54,096 - MPMX19_05379 0.90 -0.5 54,096 - MPMX19_05379 0.90 +0.8 54,096 - MPMX19_05379 0.90 -0.8 54,096 - MPMX19_05379 0.90 -0.6 54,096 - MPMX19_05379 0.90 -0.4 54,096 - MPMX19_05379 0.90 -0.1 54,096 - MPMX19_05379 0.90 -0.8 54,096 - MPMX19_05379 0.90 +0.3 54,239 - +0.2 54,296 - -0.4 54,296 - -0.4 54,296 - -0.6 54,296 - -1.4 54,333 - -1.4 54,333 - -0.6 54,526 + +1.3 54,526 + -0.4 54,526 + -0.1 54,566 + -0.8 54,566 + -1.4 54,566 + -0.1 54,566 + -0.9 54,567 - +1.0 54,567 - -1.9 54,630 + -1.6 54,630 + -0.7 54,631 - +1.3 54,631 - -0.0 54,631 - -1.2 54,631 - -0.9 54,631 - +0.4 54,801 + -0.8 54,801 + +0.2 54,801 + +0.5 54,818 + -1.5 54,818 + +0.0 54,818 + -1.6 54,818 + -0.5 54,818 + +0.2 54,818 + -2.1 54,818 + +0.2 54,818 + -0.7 54,818 + +0.1 54,818 + -1.8 54,818 + -1.6 54,818 + +0.2 54,818 + +0.4 54,818 + -0.6 54,818 + -0.4 54,819 - -1.6 54,819 - -0.1 54,819 - -1.6 54,819 - -0.9 54,819 - -0.4 54,819 - -1.9 54,841 + +0.6 54,899 + -0.8 54,925 - -0.6 54,937 + -1.9 54,937 + -0.2 54,937 + -0.4 54,938 - -1.3 54,988 + +0.2 54,989 - +0.2 54,989 - +0.0 55,016 - -1.2 55,165 + MPMX19_05380 0.28 +0.0 55,165 + MPMX19_05380 0.28 -1.1 55,165 + MPMX19_05380 0.28 -1.7 55,165 + MPMX19_05380 0.28 -1.0 55,165 + MPMX19_05380 0.28 -1.4 55,165 + MPMX19_05380 0.28 -0.1 55,165 + MPMX19_05380 0.28 -1.3 55,166 - MPMX19_05380 0.29 -2.6 55,166 - MPMX19_05380 0.29 -1.2 55,166 - MPMX19_05380 0.29 -1.2 55,166 - MPMX19_05380 0.29 -0.1 55,166 - MPMX19_05380 0.29 -0.2 55,166 - MPMX19_05380 0.29 -1.0 55,166 - MPMX19_05380 0.29 -1.1 56,303 + MPMX19_05381 0.51 -1.1 56,304 - MPMX19_05381 0.51 +1.2 56,304 - MPMX19_05381 0.51 -0.8 56,470 + MPMX19_05381 0.70 -1.3 56,470 + MPMX19_05381 0.70 +0.3 56,470 + MPMX19_05381 0.70 -0.3 56,470 + MPMX19_05381 0.70 +0.6 56,470 + MPMX19_05381 0.70 +0.0 56,470 + MPMX19_05381 0.70 -0.2 56,470 + MPMX19_05381 0.70 -0.6 56,470 + MPMX19_05381 0.70 -0.4 56,470 + MPMX19_05381 0.70 -0.2 56,470 + MPMX19_05381 0.70 -1.0 56,470 + MPMX19_05381 0.70 -0.9 56,470 + MPMX19_05381 0.70 -0.8 56,471 - MPMX19_05381 0.70 -0.4 56,471 - MPMX19_05381 0.70 -1.7 56,471 - MPMX19_05381 0.70 -0.6 56,471 - MPMX19_05381 0.70 -2.4 56,471 - MPMX19_05381 0.70 +0.1 56,471 - MPMX19_05381 0.70 +0.3 56,471 - MPMX19_05381 0.70 -2.2 56,471 - MPMX19_05381 0.70 -1.2 56,471 - MPMX19_05381 0.70 +0.0 56,471 - MPMX19_05381 0.70 +0.2 56,471 - MPMX19_05381 0.70 -0.4 56,471 - MPMX19_05381 0.70 -1.1 56,471 - MPMX19_05381 0.70 +0.2 56,471 - MPMX19_05381 0.70 -1.4 56,471 - MPMX19_05381 0.70 -0.8 56,471 - MPMX19_05381 0.70 +0.1 56,471 - MPMX19_05381 0.70 -0.2 56,471 - MPMX19_05381 0.70 +1.0 56,510 + MPMX19_05381 0.75 -0.6 56,510 + MPMX19_05381 0.75 +0.2 56,510 + MPMX19_05381 0.75 -0.9 56,510 + MPMX19_05381 0.75 +0.5 56,510 + MPMX19_05381 0.75 -0.2 56,510 + MPMX19_05381 0.75 +0.6 56,510 + MPMX19_05381 0.75 -0.4 56,510 + MPMX19_05381 0.75 -0.6 56,510 + MPMX19_05381 0.75 -0.9 56,510 + MPMX19_05381 0.75 -1.2 56,510 + MPMX19_05381 0.75 +0.6 56,510 + MPMX19_05381 0.75 +1.2 56,510 + MPMX19_05381 0.75 -0.8 56,510 + MPMX19_05381 0.75 -0.8 56,510 + MPMX19_05381 0.75 -1.3 56,510 + MPMX19_05381 0.75 +1.8 56,510 + MPMX19_05381 0.75 -1.2 56,510 + MPMX19_05381 0.75 +0.2 56,510 + MPMX19_05381 0.75 +0.9 56,510 + MPMX19_05381 0.75 -0.1 56,510 + MPMX19_05381 0.75 -0.8 56,510 + MPMX19_05381 0.75 -1.2 56,510 + MPMX19_05381 0.75 +0.2 56,510 + MPMX19_05381 0.75 -0.2 56,511 - MPMX19_05381 0.75 -0.0 56,511 - MPMX19_05381 0.75 -1.6 56,511 - MPMX19_05381 0.75 +1.2 56,511 - MPMX19_05381 0.75 +0.9 56,511 - MPMX19_05381 0.75 +0.5 56,511 - MPMX19_05381 0.75 -0.9 56,511 - MPMX19_05381 0.75 -0.9 56,511 - MPMX19_05381 0.75 -1.1 56,511 - MPMX19_05381 0.75 -1.5 56,511 - MPMX19_05381 0.75 -0.1 56,511 - MPMX19_05381 0.75 +0.4 56,570 + MPMX19_05381 0.81 -1.5 56,570 + MPMX19_05381 0.81 +0.4 56,570 + MPMX19_05381 0.81 -1.4 56,570 + MPMX19_05381 0.81 +0.0 56,570 + MPMX19_05381 0.81 -1.1 56,570 + MPMX19_05381 0.81 -0.6 56,571 - MPMX19_05381 0.82 -0.5 56,571 - MPMX19_05381 0.82 +0.9 56,571 - MPMX19_05381 0.82 -1.4 56,571 - MPMX19_05381 0.82 +1.1 56,571 - MPMX19_05381 0.82 -1.1 56,571 - MPMX19_05381 0.82 -0.8 56,571 - MPMX19_05381 0.82 -1.2 56,571 - MPMX19_05381 0.82 +0.5 56,571 - MPMX19_05381 0.82 -0.2 56,571 - MPMX19_05381 0.82 +0.3 56,571 - MPMX19_05381 0.82 +0.4 56,645 + MPMX19_05381 0.90 -0.1 56,645 + MPMX19_05381 0.90 -0.2 56,645 + MPMX19_05381 0.90 -0.3 56,645 + MPMX19_05381 0.90 -1.9 56,645 + MPMX19_05381 0.90 -1.8 56,646 - +1.0 56,646 - +1.0 56,646 - -1.8 56,646 - +0.2 56,646 - +0.7 56,646 - +0.4 56,646 - -0.9 56,654 + -0.8 56,654 + +1.8 56,655 - +0.3
Or see this region's nucleotide sequence