Experiment: NF
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_05357 and MPMX19_05358 are separated by 455 nucleotides MPMX19_05358 and MPMX19_05359 are separated by 117 nucleotides
MPMX19_05357: MPMX19_05357 - hypothetical protein, at 31,034 to 34,093
_05357
MPMX19_05358: MPMX19_05358 - hypothetical protein, at 34,549 to 34,746
_05358
MPMX19_05359: MPMX19_05359 - hypothetical protein, at 34,864 to 36,135
_05359
Position (kb)
34
35 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 33.735 kb on + strand, within MPMX19_05357 at 33.735 kb on + strand, within MPMX19_05357 at 33.735 kb on + strand, within MPMX19_05357 at 33.735 kb on + strand, within MPMX19_05357 at 33.735 kb on + strand, within MPMX19_05357 at 33.735 kb on + strand, within MPMX19_05357 at 33.735 kb on + strand, within MPMX19_05357 at 33.735 kb on + strand, within MPMX19_05357 at 33.735 kb on + strand, within MPMX19_05357 at 33.735 kb on + strand, within MPMX19_05357 at 33.736 kb on - strand, within MPMX19_05357 at 33.736 kb on - strand, within MPMX19_05357 at 33.736 kb on - strand, within MPMX19_05357 at 33.736 kb on - strand, within MPMX19_05357 at 33.736 kb on - strand, within MPMX19_05357 at 33.736 kb on - strand, within MPMX19_05357 at 33.780 kb on - strand, within MPMX19_05357 at 33.885 kb on + strand at 33.886 kb on - strand at 33.886 kb on - strand at 33.915 kb on - strand at 33.915 kb on - strand at 33.936 kb on + strand at 34.025 kb on - strand at 34.059 kb on + strand at 34.103 kb on - strand at 34.127 kb on - strand at 34.127 kb on - strand at 34.151 kb on + strand at 34.200 kb on + strand at 34.200 kb on + strand at 34.200 kb on + strand at 34.200 kb on + strand at 34.201 kb on - strand at 34.229 kb on + strand at 34.229 kb on + strand at 34.230 kb on - strand at 34.230 kb on - strand at 34.230 kb on - strand at 34.230 kb on - strand at 34.230 kb on - strand at 34.235 kb on + strand at 34.235 kb on + strand at 34.235 kb on + strand at 34.235 kb on + strand at 34.235 kb on + strand at 34.235 kb on + strand at 34.236 kb on - strand at 34.236 kb on - strand at 34.370 kb on + strand at 34.371 kb on - strand at 34.371 kb on - strand at 34.373 kb on + strand at 34.374 kb on - strand at 34.374 kb on - strand at 34.374 kb on - strand at 34.374 kb on - strand at 34.505 kb on + strand at 34.506 kb on - strand at 34.533 kb on + strand at 34.533 kb on + strand at 34.533 kb on + strand at 34.533 kb on + strand at 34.534 kb on - strand at 34.603 kb on + strand, within MPMX19_05358 at 34.603 kb on + strand, within MPMX19_05358 at 34.604 kb on - strand, within MPMX19_05358 at 34.885 kb on - strand at 34.920 kb on + strand at 34.920 kb on + strand at 34.920 kb on + strand at 34.920 kb on + strand at 34.920 kb on + strand at 34.921 kb on - strand at 34.921 kb on - strand at 34.921 kb on - strand at 35.152 kb on + strand, within MPMX19_05359 at 35.152 kb on + strand, within MPMX19_05359 at 35.152 kb on + strand, within MPMX19_05359 at 35.152 kb on + strand, within MPMX19_05359 at 35.152 kb on + strand, within MPMX19_05359 at 35.153 kb on - strand, within MPMX19_05359 at 35.153 kb on - strand, within MPMX19_05359 at 35.153 kb on - strand, within MPMX19_05359 at 35.153 kb on - strand, within MPMX19_05359 at 35.153 kb on - strand, within MPMX19_05359 at 35.153 kb on - strand, within MPMX19_05359 at 35.153 kb on - strand, within MPMX19_05359 at 35.153 kb on - strand, within MPMX19_05359 at 35.153 kb on - strand, within MPMX19_05359 at 35.153 kb on - strand, within MPMX19_05359 at 35.570 kb on + strand, within MPMX19_05359 at 35.570 kb on + strand, within MPMX19_05359 at 35.570 kb on + strand, within MPMX19_05359 at 35.570 kb on + strand, within MPMX19_05359 at 35.570 kb on + strand, within MPMX19_05359 at 35.570 kb on + strand, within MPMX19_05359 at 35.570 kb on + strand, within MPMX19_05359 at 35.571 kb on - strand, within MPMX19_05359 at 35.571 kb on - strand, within MPMX19_05359 at 35.571 kb on - strand, within MPMX19_05359 at 35.571 kb on - strand, within MPMX19_05359 at 35.571 kb on - strand, within MPMX19_05359
Per-strain Table
Position Strand Gene LocusTag Fraction NF remove 33,735 + MPMX19_05357 0.88 +1.2 33,735 + MPMX19_05357 0.88 -0.9 33,735 + MPMX19_05357 0.88 -0.6 33,735 + MPMX19_05357 0.88 -0.1 33,735 + MPMX19_05357 0.88 +0.4 33,735 + MPMX19_05357 0.88 -1.7 33,735 + MPMX19_05357 0.88 -1.3 33,735 + MPMX19_05357 0.88 +1.1 33,735 + MPMX19_05357 0.88 -0.1 33,735 + MPMX19_05357 0.88 +1.2 33,736 - MPMX19_05357 0.88 -0.1 33,736 - MPMX19_05357 0.88 -0.1 33,736 - MPMX19_05357 0.88 -1.4 33,736 - MPMX19_05357 0.88 -1.6 33,736 - MPMX19_05357 0.88 -0.1 33,736 - MPMX19_05357 0.88 -0.4 33,780 - MPMX19_05357 0.90 -1.9 33,885 + +2.0 33,886 - +1.8 33,886 - -0.5 33,915 - -0.2 33,915 - -1.6 33,936 + -0.8 34,025 - -1.5 34,059 + -0.9 34,103 - +1.3 34,127 - -0.6 34,127 - -1.4 34,151 + -0.2 34,200 + +1.8 34,200 + -1.2 34,200 + +1.2 34,200 + +0.1 34,201 - -0.7 34,229 + -1.9 34,229 + -0.6 34,230 - -0.4 34,230 - -0.7 34,230 - -0.9 34,230 - -0.2 34,230 - -1.2 34,235 + -1.2 34,235 + -1.2 34,235 + -0.4 34,235 + +0.4 34,235 + -2.2 34,235 + -1.6 34,236 - -1.2 34,236 - -1.2 34,370 + -0.7 34,371 - -0.5 34,371 - -0.2 34,373 + -0.5 34,374 - +0.4 34,374 - +0.8 34,374 - -1.5 34,374 - -1.0 34,505 + -0.8 34,506 - +0.0 34,533 + +1.1 34,533 + +0.4 34,533 + -0.1 34,533 + +1.0 34,534 - -1.8 34,603 + MPMX19_05358 0.27 -0.2 34,603 + MPMX19_05358 0.27 -2.2 34,604 - MPMX19_05358 0.28 -1.4 34,885 - -1.2 34,920 + -0.6 34,920 + -0.2 34,920 + -1.4 34,920 + +1.3 34,920 + -0.1 34,921 - -0.8 34,921 - -1.4 34,921 - -1.8 35,152 + MPMX19_05359 0.23 -2.2 35,152 + MPMX19_05359 0.23 -0.2 35,152 + MPMX19_05359 0.23 -1.7 35,152 + MPMX19_05359 0.23 +0.2 35,152 + MPMX19_05359 0.23 +0.5 35,153 - MPMX19_05359 0.23 +0.2 35,153 - MPMX19_05359 0.23 +0.2 35,153 - MPMX19_05359 0.23 -0.1 35,153 - MPMX19_05359 0.23 -0.8 35,153 - MPMX19_05359 0.23 -2.0 35,153 - MPMX19_05359 0.23 -0.7 35,153 - MPMX19_05359 0.23 -0.6 35,153 - MPMX19_05359 0.23 -3.0 35,153 - MPMX19_05359 0.23 +0.0 35,153 - MPMX19_05359 0.23 -0.1 35,570 + MPMX19_05359 0.56 +0.3 35,570 + MPMX19_05359 0.56 -0.5 35,570 + MPMX19_05359 0.56 -0.2 35,570 + MPMX19_05359 0.56 -1.2 35,570 + MPMX19_05359 0.56 -0.9 35,570 + MPMX19_05359 0.56 -1.2 35,570 + MPMX19_05359 0.56 +0.9 35,571 - MPMX19_05359 0.56 +1.8 35,571 - MPMX19_05359 0.56 +0.2 35,571 - MPMX19_05359 0.56 -3.2 35,571 - MPMX19_05359 0.56 -0.1 35,571 - MPMX19_05359 0.56 -0.6
Or see this region's nucleotide sequence