Experiment: NF
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_05341 and MPMX19_05342 are separated by 79 nucleotides MPMX19_05342 and MPMX19_05343 are separated by 147 nucleotides
MPMX19_05341: MPMX19_05341 - hypothetical protein, at 13,975 to 14,751
_05341
MPMX19_05342: MPMX19_05342 - hypothetical protein, at 14,831 to 15,103
_05342
MPMX19_05343: MPMX19_05343 - hypothetical protein, at 15,251 to 16,255
_05343
Position (kb) 14
15
16 Strain fitness (log2 ratio) -2
-1
0
1
2 at 13.836 kb on - strand at 13.895 kb on + strand at 13.895 kb on + strand at 13.895 kb on + strand at 13.895 kb on + strand at 13.895 kb on + strand at 13.895 kb on + strand at 13.895 kb on + strand at 13.895 kb on + strand at 13.896 kb on - strand at 13.896 kb on - strand at 13.896 kb on - strand at 13.896 kb on - strand at 13.896 kb on - strand at 13.896 kb on - strand at 13.896 kb on - strand at 13.896 kb on - strand at 13.947 kb on + strand at 13.947 kb on + strand at 13.948 kb on - strand at 13.948 kb on - strand at 13.948 kb on - strand at 14.167 kb on + strand, within MPMX19_05341 at 14.167 kb on + strand, within MPMX19_05341 at 14.167 kb on + strand, within MPMX19_05341 at 14.167 kb on + strand, within MPMX19_05341 at 14.167 kb on + strand, within MPMX19_05341 at 14.167 kb on + strand, within MPMX19_05341 at 14.167 kb on + strand, within MPMX19_05341 at 14.167 kb on + strand, within MPMX19_05341 at 14.167 kb on + strand, within MPMX19_05341 at 14.167 kb on + strand, within MPMX19_05341 at 14.168 kb on - strand, within MPMX19_05341 at 14.168 kb on - strand, within MPMX19_05341 at 14.168 kb on - strand, within MPMX19_05341 at 14.168 kb on - strand, within MPMX19_05341 at 14.168 kb on - strand, within MPMX19_05341 at 14.168 kb on - strand, within MPMX19_05341 at 14.168 kb on - strand, within MPMX19_05341 at 14.168 kb on - strand, within MPMX19_05341 at 14.168 kb on - strand, within MPMX19_05341 at 14.259 kb on + strand, within MPMX19_05341 at 14.259 kb on + strand, within MPMX19_05341 at 14.260 kb on - strand, within MPMX19_05341 at 14.320 kb on + strand, within MPMX19_05341 at 14.320 kb on + strand, within MPMX19_05341 at 14.320 kb on + strand, within MPMX19_05341 at 14.320 kb on + strand, within MPMX19_05341 at 14.320 kb on + strand, within MPMX19_05341 at 14.320 kb on + strand, within MPMX19_05341 at 14.320 kb on + strand, within MPMX19_05341 at 14.320 kb on + strand, within MPMX19_05341 at 14.320 kb on + strand, within MPMX19_05341 at 14.321 kb on - strand, within MPMX19_05341 at 14.321 kb on - strand, within MPMX19_05341 at 14.321 kb on - strand, within MPMX19_05341 at 14.321 kb on - strand, within MPMX19_05341 at 14.321 kb on - strand, within MPMX19_05341 at 14.321 kb on - strand, within MPMX19_05341 at 14.321 kb on - strand, within MPMX19_05341 at 14.321 kb on - strand, within MPMX19_05341 at 14.321 kb on - strand, within MPMX19_05341 at 14.321 kb on - strand, within MPMX19_05341 at 14.596 kb on + strand, within MPMX19_05341 at 14.596 kb on + strand, within MPMX19_05341 at 14.596 kb on + strand, within MPMX19_05341 at 14.596 kb on + strand, within MPMX19_05341 at 14.596 kb on + strand, within MPMX19_05341 at 14.597 kb on - strand, within MPMX19_05341 at 14.597 kb on - strand, within MPMX19_05341 at 14.597 kb on - strand, within MPMX19_05341 at 14.597 kb on - strand, within MPMX19_05341 at 14.597 kb on - strand, within MPMX19_05341 at 14.597 kb on - strand, within MPMX19_05341 at 14.671 kb on + strand, within MPMX19_05341 at 14.672 kb on - strand, within MPMX19_05341 at 14.672 kb on - strand, within MPMX19_05341 at 14.672 kb on - strand, within MPMX19_05341 at 14.709 kb on + strand at 14.709 kb on + strand at 14.709 kb on + strand at 14.709 kb on + strand at 14.709 kb on + strand at 14.709 kb on + strand at 14.709 kb on + strand at 14.709 kb on + strand at 14.709 kb on + strand at 14.709 kb on + strand at 14.709 kb on + strand at 14.710 kb on - strand at 14.710 kb on - strand at 14.710 kb on - strand at 14.710 kb on - strand at 14.710 kb on - strand at 14.710 kb on - strand at 14.710 kb on - strand at 14.710 kb on - strand at 14.710 kb on - strand at 14.710 kb on - strand at 14.749 kb on + strand at 14.909 kb on + strand, within MPMX19_05342 at 14.909 kb on + strand, within MPMX19_05342 at 14.909 kb on + strand, within MPMX19_05342 at 14.909 kb on + strand, within MPMX19_05342 at 14.910 kb on - strand, within MPMX19_05342 at 14.910 kb on - strand, within MPMX19_05342 at 14.942 kb on + strand, within MPMX19_05342 at 14.942 kb on + strand, within MPMX19_05342 at 14.942 kb on + strand, within MPMX19_05342 at 14.943 kb on - strand, within MPMX19_05342 at 14.943 kb on - strand, within MPMX19_05342 at 14.943 kb on - strand, within MPMX19_05342 at 15.053 kb on + strand, within MPMX19_05342 at 15.053 kb on + strand, within MPMX19_05342 at 15.053 kb on + strand, within MPMX19_05342 at 15.053 kb on + strand, within MPMX19_05342 at 15.053 kb on + strand, within MPMX19_05342 at 15.053 kb on + strand, within MPMX19_05342 at 15.053 kb on + strand, within MPMX19_05342 at 15.054 kb on - strand, within MPMX19_05342 at 15.054 kb on - strand, within MPMX19_05342 at 15.054 kb on - strand, within MPMX19_05342 at 15.180 kb on - strand at 15.362 kb on + strand, within MPMX19_05343 at 15.362 kb on + strand, within MPMX19_05343 at 15.363 kb on - strand, within MPMX19_05343 at 15.363 kb on - strand, within MPMX19_05343 at 15.363 kb on - strand, within MPMX19_05343 at 15.545 kb on + strand, within MPMX19_05343 at 15.545 kb on + strand, within MPMX19_05343 at 15.545 kb on + strand, within MPMX19_05343 at 15.546 kb on - strand, within MPMX19_05343 at 15.546 kb on - strand, within MPMX19_05343 at 15.546 kb on - strand, within MPMX19_05343 at 15.935 kb on + strand, within MPMX19_05343 at 15.935 kb on + strand, within MPMX19_05343 at 15.935 kb on + strand, within MPMX19_05343 at 15.935 kb on + strand, within MPMX19_05343 at 15.935 kb on + strand, within MPMX19_05343 at 15.936 kb on - strand, within MPMX19_05343 at 15.936 kb on - strand, within MPMX19_05343 at 15.936 kb on - strand, within MPMX19_05343 at 15.936 kb on - strand, within MPMX19_05343
Per-strain Table
Position Strand Gene LocusTag Fraction NF remove 13,836 - +1.8 13,895 + +0.7 13,895 + -0.7 13,895 + +0.1 13,895 + -1.1 13,895 + +0.2 13,895 + -0.2 13,895 + -0.4 13,895 + +0.2 13,896 - +0.4 13,896 - -0.2 13,896 - -1.2 13,896 - -1.1 13,896 - -0.6 13,896 - -0.2 13,896 - +1.2 13,896 - -0.2 13,947 + -0.2 13,947 + +0.6 13,948 - -1.8 13,948 - +0.3 13,948 - +0.9 14,167 + MPMX19_05341 0.25 +0.5 14,167 + MPMX19_05341 0.25 +0.8 14,167 + MPMX19_05341 0.25 -0.2 14,167 + MPMX19_05341 0.25 +0.1 14,167 + MPMX19_05341 0.25 -1.7 14,167 + MPMX19_05341 0.25 +0.1 14,167 + MPMX19_05341 0.25 -2.3 14,167 + MPMX19_05341 0.25 -1.4 14,167 + MPMX19_05341 0.25 +0.3 14,167 + MPMX19_05341 0.25 -0.2 14,168 - MPMX19_05341 0.25 -0.6 14,168 - MPMX19_05341 0.25 -0.1 14,168 - MPMX19_05341 0.25 -1.7 14,168 - MPMX19_05341 0.25 -1.2 14,168 - MPMX19_05341 0.25 -0.8 14,168 - MPMX19_05341 0.25 -0.3 14,168 - MPMX19_05341 0.25 +1.2 14,168 - MPMX19_05341 0.25 -0.6 14,168 - MPMX19_05341 0.25 +0.3 14,259 + MPMX19_05341 0.37 +1.8 14,259 + MPMX19_05341 0.37 -0.4 14,260 - MPMX19_05341 0.37 -1.4 14,320 + MPMX19_05341 0.44 +0.3 14,320 + MPMX19_05341 0.44 -1.4 14,320 + MPMX19_05341 0.44 -0.4 14,320 + MPMX19_05341 0.44 +0.2 14,320 + MPMX19_05341 0.44 -1.3 14,320 + MPMX19_05341 0.44 -0.2 14,320 + MPMX19_05341 0.44 +0.2 14,320 + MPMX19_05341 0.44 -0.9 14,320 + MPMX19_05341 0.44 +0.3 14,321 - MPMX19_05341 0.45 -2.1 14,321 - MPMX19_05341 0.45 -0.4 14,321 - MPMX19_05341 0.45 -0.3 14,321 - MPMX19_05341 0.45 +0.3 14,321 - MPMX19_05341 0.45 -2.1 14,321 - MPMX19_05341 0.45 -0.2 14,321 - MPMX19_05341 0.45 +0.1 14,321 - MPMX19_05341 0.45 +0.1 14,321 - MPMX19_05341 0.45 -0.1 14,321 - MPMX19_05341 0.45 -0.2 14,596 + MPMX19_05341 0.80 -0.7 14,596 + MPMX19_05341 0.80 -0.8 14,596 + MPMX19_05341 0.80 -0.2 14,596 + MPMX19_05341 0.80 -1.4 14,596 + MPMX19_05341 0.80 +0.8 14,597 - MPMX19_05341 0.80 +0.9 14,597 - MPMX19_05341 0.80 +1.4 14,597 - MPMX19_05341 0.80 -0.7 14,597 - MPMX19_05341 0.80 +1.2 14,597 - MPMX19_05341 0.80 -1.7 14,597 - MPMX19_05341 0.80 -1.8 14,671 + MPMX19_05341 0.90 +0.9 14,672 - MPMX19_05341 0.90 -0.1 14,672 - MPMX19_05341 0.90 -0.2 14,672 - MPMX19_05341 0.90 +0.1 14,709 + -0.1 14,709 + +0.6 14,709 + +0.3 14,709 + -0.7 14,709 + -0.4 14,709 + -0.1 14,709 + +0.3 14,709 + -0.2 14,709 + +1.0 14,709 + -1.1 14,709 + +0.4 14,710 - -1.6 14,710 - -0.6 14,710 - -0.4 14,710 - +2.3 14,710 - +0.2 14,710 - +1.2 14,710 - -0.7 14,710 - -0.4 14,710 - -0.1 14,710 - +0.2 14,749 + -2.1 14,909 + MPMX19_05342 0.29 +1.8 14,909 + MPMX19_05342 0.29 +1.3 14,909 + MPMX19_05342 0.29 -1.7 14,909 + MPMX19_05342 0.29 +1.4 14,910 - MPMX19_05342 0.29 +0.8 14,910 - MPMX19_05342 0.29 +0.4 14,942 + MPMX19_05342 0.41 -0.4 14,942 + MPMX19_05342 0.41 -0.1 14,942 + MPMX19_05342 0.41 -0.8 14,943 - MPMX19_05342 0.41 -1.7 14,943 - MPMX19_05342 0.41 -1.1 14,943 - MPMX19_05342 0.41 -1.0 15,053 + MPMX19_05342 0.81 -0.5 15,053 + MPMX19_05342 0.81 -0.9 15,053 + MPMX19_05342 0.81 +0.8 15,053 + MPMX19_05342 0.81 -0.2 15,053 + MPMX19_05342 0.81 +0.9 15,053 + MPMX19_05342 0.81 -0.3 15,053 + MPMX19_05342 0.81 -1.8 15,054 - MPMX19_05342 0.82 +0.2 15,054 - MPMX19_05342 0.82 +0.5 15,054 - MPMX19_05342 0.82 +0.2 15,180 - -1.1 15,362 + MPMX19_05343 0.11 -0.6 15,362 + MPMX19_05343 0.11 -1.1 15,363 - MPMX19_05343 0.11 -0.0 15,363 - MPMX19_05343 0.11 -0.1 15,363 - MPMX19_05343 0.11 -0.8 15,545 + MPMX19_05343 0.29 +0.3 15,545 + MPMX19_05343 0.29 -1.1 15,545 + MPMX19_05343 0.29 +1.5 15,546 - MPMX19_05343 0.29 +0.3 15,546 - MPMX19_05343 0.29 +0.3 15,546 - MPMX19_05343 0.29 -0.8 15,935 + MPMX19_05343 0.68 +0.1 15,935 + MPMX19_05343 0.68 +1.0 15,935 + MPMX19_05343 0.68 +1.3 15,935 + MPMX19_05343 0.68 +1.1 15,935 + MPMX19_05343 0.68 +0.3 15,936 - MPMX19_05343 0.68 -0.5 15,936 - MPMX19_05343 0.68 +0.1 15,936 - MPMX19_05343 0.68 -0.5 15,936 - MPMX19_05343 0.68 -1.4
Or see this region's nucleotide sequence