Experiment: NF
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_05269 and MPMX19_05270 are separated by 30 nucleotides MPMX19_05270 and MPMX19_05271 are separated by 95 nucleotides MPMX19_05271 and MPMX19_05272 are separated by 20 nucleotides MPMX19_05272 and MPMX19_05273 are separated by 11 nucleotides MPMX19_05273 and MPMX19_05274 are separated by 229 nucleotides
MPMX19_05269: MPMX19_05269 - hypothetical protein, at 804,104 to 804,937
_05269
MPMX19_05270: MPMX19_05270 - hypothetical protein, at 804,968 to 805,495
_05270
MPMX19_05271: MPMX19_05271 - hypothetical protein, at 805,591 to 805,746
_05271
MPMX19_05272: MPMX19_05272 - hypothetical protein, at 805,767 to 806,069
_05272
MPMX19_05273: MPMX19_05273 - hypothetical protein, at 806,081 to 806,695
_05273
MPMX19_05274: MPMX19_05274 - Nitric oxide reductase subunit C, at 806,925 to 807,377
_05274
Position (kb) 805
806
807 Strain fitness (log2 ratio) -2
-1
0
1
2 at 804.935 kb on + strand at 804.969 kb on + strand at 804.969 kb on + strand at 804.970 kb on - strand at 804.970 kb on - strand at 804.994 kb on - strand at 805.258 kb on + strand, within MPMX19_05270 at 805.258 kb on + strand, within MPMX19_05270 at 805.258 kb on + strand, within MPMX19_05270 at 805.258 kb on + strand, within MPMX19_05270 at 805.259 kb on - strand, within MPMX19_05270 at 805.259 kb on - strand, within MPMX19_05270 at 805.259 kb on - strand, within MPMX19_05270 at 805.259 kb on - strand, within MPMX19_05270 at 805.259 kb on - strand, within MPMX19_05270 at 805.259 kb on - strand, within MPMX19_05270 at 805.269 kb on + strand, within MPMX19_05270 at 805.269 kb on + strand, within MPMX19_05270 at 805.269 kb on + strand, within MPMX19_05270 at 805.269 kb on + strand, within MPMX19_05270 at 805.269 kb on + strand, within MPMX19_05270 at 805.270 kb on - strand, within MPMX19_05270 at 805.270 kb on - strand, within MPMX19_05270 at 805.270 kb on - strand, within MPMX19_05270 at 805.270 kb on - strand, within MPMX19_05270 at 805.270 kb on - strand, within MPMX19_05270 at 805.371 kb on + strand, within MPMX19_05270 at 805.371 kb on + strand, within MPMX19_05270 at 805.371 kb on + strand, within MPMX19_05270 at 805.372 kb on - strand, within MPMX19_05270 at 805.372 kb on - strand, within MPMX19_05270 at 805.372 kb on - strand, within MPMX19_05270 at 805.372 kb on - strand, within MPMX19_05270 at 805.540 kb on + strand at 805.540 kb on + strand at 805.540 kb on + strand at 805.540 kb on + strand at 805.540 kb on + strand at 805.540 kb on + strand at 805.541 kb on - strand at 805.541 kb on - strand at 805.541 kb on - strand at 805.541 kb on - strand at 805.541 kb on - strand at 805.541 kb on - strand at 805.541 kb on - strand at 805.541 kb on - strand at 805.546 kb on + strand at 805.547 kb on - strand at 805.547 kb on - strand at 805.547 kb on - strand at 805.599 kb on + strand at 805.679 kb on + strand, within MPMX19_05271 at 805.679 kb on + strand, within MPMX19_05271 at 805.679 kb on + strand, within MPMX19_05271 at 805.679 kb on + strand, within MPMX19_05271 at 805.734 kb on + strand at 805.734 kb on + strand at 805.734 kb on + strand at 805.734 kb on + strand at 805.734 kb on + strand at 805.734 kb on + strand at 805.734 kb on + strand at 805.735 kb on - strand at 805.735 kb on - strand at 805.735 kb on - strand at 805.735 kb on - strand at 805.735 kb on - strand at 805.735 kb on - strand at 805.735 kb on - strand at 805.891 kb on + strand, within MPMX19_05272 at 805.891 kb on + strand, within MPMX19_05272 at 805.891 kb on + strand, within MPMX19_05272 at 805.891 kb on + strand, within MPMX19_05272 at 805.891 kb on + strand, within MPMX19_05272 at 805.891 kb on + strand, within MPMX19_05272 at 805.892 kb on - strand, within MPMX19_05272 at 805.892 kb on - strand, within MPMX19_05272 at 805.892 kb on - strand, within MPMX19_05272 at 805.892 kb on - strand, within MPMX19_05272 at 806.094 kb on + strand at 806.094 kb on + strand at 806.094 kb on + strand at 806.094 kb on + strand at 806.094 kb on + strand at 806.094 kb on + strand at 806.095 kb on - strand at 806.095 kb on - strand at 806.095 kb on - strand at 806.095 kb on - strand at 806.095 kb on - strand at 806.095 kb on - strand at 806.106 kb on + strand at 806.106 kb on + strand at 806.107 kb on - strand at 806.259 kb on + strand, within MPMX19_05273 at 806.259 kb on + strand, within MPMX19_05273 at 806.259 kb on + strand, within MPMX19_05273 at 806.259 kb on + strand, within MPMX19_05273 at 806.260 kb on - strand, within MPMX19_05273 at 806.260 kb on - strand, within MPMX19_05273 at 806.260 kb on - strand, within MPMX19_05273 at 806.260 kb on - strand, within MPMX19_05273 at 806.260 kb on - strand, within MPMX19_05273 at 806.316 kb on + strand, within MPMX19_05273 at 806.316 kb on + strand, within MPMX19_05273 at 806.316 kb on + strand, within MPMX19_05273 at 806.316 kb on + strand, within MPMX19_05273 at 806.317 kb on - strand, within MPMX19_05273 at 806.317 kb on - strand, within MPMX19_05273 at 806.433 kb on + strand, within MPMX19_05273 at 806.434 kb on - strand, within MPMX19_05273 at 806.434 kb on - strand, within MPMX19_05273 at 806.723 kb on + strand at 806.723 kb on + strand at 806.723 kb on + strand at 806.724 kb on - strand at 806.724 kb on - strand at 806.724 kb on - strand at 806.735 kb on - strand at 806.797 kb on + strand at 806.797 kb on + strand at 806.797 kb on + strand at 806.798 kb on - strand at 806.798 kb on - strand at 806.818 kb on + strand at 806.818 kb on + strand at 806.818 kb on + strand at 806.818 kb on + strand at 806.819 kb on - strand at 806.819 kb on - strand at 807.027 kb on + strand, within MPMX19_05274 at 807.027 kb on + strand, within MPMX19_05274 at 807.027 kb on + strand, within MPMX19_05274 at 807.027 kb on + strand, within MPMX19_05274 at 807.027 kb on + strand, within MPMX19_05274 at 807.028 kb on - strand, within MPMX19_05274 at 807.028 kb on - strand, within MPMX19_05274 at 807.028 kb on - strand, within MPMX19_05274 at 807.051 kb on - strand, within MPMX19_05274
Per-strain Table
Position Strand Gene LocusTag Fraction NF remove 804,935 + +0.6 804,969 + +0.3 804,969 + -1.2 804,970 - -0.4 804,970 - -1.0 804,994 - +1.6 805,258 + MPMX19_05270 0.55 -0.9 805,258 + MPMX19_05270 0.55 -1.6 805,258 + MPMX19_05270 0.55 -1.2 805,258 + MPMX19_05270 0.55 +0.3 805,259 - MPMX19_05270 0.55 -0.8 805,259 - MPMX19_05270 0.55 -0.4 805,259 - MPMX19_05270 0.55 -0.0 805,259 - MPMX19_05270 0.55 +0.2 805,259 - MPMX19_05270 0.55 -1.4 805,259 - MPMX19_05270 0.55 -0.1 805,269 + MPMX19_05270 0.57 -0.7 805,269 + MPMX19_05270 0.57 +0.1 805,269 + MPMX19_05270 0.57 -0.0 805,269 + MPMX19_05270 0.57 -1.7 805,269 + MPMX19_05270 0.57 +1.0 805,270 - MPMX19_05270 0.57 +0.5 805,270 - MPMX19_05270 0.57 -0.7 805,270 - MPMX19_05270 0.57 +0.8 805,270 - MPMX19_05270 0.57 -0.5 805,270 - MPMX19_05270 0.57 -0.7 805,371 + MPMX19_05270 0.76 -0.4 805,371 + MPMX19_05270 0.76 -1.7 805,371 + MPMX19_05270 0.76 -0.6 805,372 - MPMX19_05270 0.77 +0.4 805,372 - MPMX19_05270 0.77 -0.4 805,372 - MPMX19_05270 0.77 +0.8 805,372 - MPMX19_05270 0.77 -0.7 805,540 + +1.2 805,540 + +0.6 805,540 + +0.3 805,540 + -1.0 805,540 + +0.2 805,540 + -1.1 805,541 - +0.8 805,541 - -2.0 805,541 - -0.7 805,541 - +0.3 805,541 - -1.5 805,541 - -0.2 805,541 - -0.2 805,541 - -0.5 805,546 + -1.4 805,547 - -0.9 805,547 - -2.5 805,547 - +0.1 805,599 + +0.6 805,679 + MPMX19_05271 0.56 -0.7 805,679 + MPMX19_05271 0.56 -1.2 805,679 + MPMX19_05271 0.56 -2.4 805,679 + MPMX19_05271 0.56 -0.2 805,734 + -0.1 805,734 + +1.2 805,734 + +0.4 805,734 + -0.1 805,734 + -0.7 805,734 + -0.6 805,734 + -0.7 805,735 - +0.2 805,735 - +0.3 805,735 - +0.9 805,735 - +0.1 805,735 - +0.1 805,735 - -1.8 805,735 - -0.3 805,891 + MPMX19_05272 0.41 -1.5 805,891 + MPMX19_05272 0.41 -0.9 805,891 + MPMX19_05272 0.41 +1.6 805,891 + MPMX19_05272 0.41 -1.2 805,891 + MPMX19_05272 0.41 -0.4 805,891 + MPMX19_05272 0.41 +0.6 805,892 - MPMX19_05272 0.41 -0.8 805,892 - MPMX19_05272 0.41 -2.0 805,892 - MPMX19_05272 0.41 -0.7 805,892 - MPMX19_05272 0.41 -1.1 806,094 + +1.6 806,094 + +0.3 806,094 + -0.9 806,094 + -0.9 806,094 + -0.9 806,094 + -0.1 806,095 - +0.2 806,095 - -0.8 806,095 - -1.5 806,095 - -0.9 806,095 - +0.2 806,095 - +1.0 806,106 + -1.4 806,106 + -0.9 806,107 - +0.1 806,259 + MPMX19_05273 0.29 +0.5 806,259 + MPMX19_05273 0.29 +0.1 806,259 + MPMX19_05273 0.29 -0.2 806,259 + MPMX19_05273 0.29 +0.5 806,260 - MPMX19_05273 0.29 +0.2 806,260 - MPMX19_05273 0.29 +0.1 806,260 - MPMX19_05273 0.29 +0.1 806,260 - MPMX19_05273 0.29 +1.2 806,260 - MPMX19_05273 0.29 -0.5 806,316 + MPMX19_05273 0.38 +2.6 806,316 + MPMX19_05273 0.38 -0.7 806,316 + MPMX19_05273 0.38 -0.1 806,316 + MPMX19_05273 0.38 +0.9 806,317 - MPMX19_05273 0.38 +0.6 806,317 - MPMX19_05273 0.38 +0.8 806,433 + MPMX19_05273 0.57 +0.1 806,434 - MPMX19_05273 0.57 -1.5 806,434 - MPMX19_05273 0.57 -1.9 806,723 + -0.9 806,723 + -0.1 806,723 + -0.5 806,724 - -0.3 806,724 - +0.3 806,724 - -0.7 806,735 - -0.2 806,797 + +0.3 806,797 + -1.8 806,797 + -0.2 806,798 - -1.0 806,798 - -0.6 806,818 + +0.3 806,818 + -2.3 806,818 + -1.0 806,818 + -0.9 806,819 - +1.1 806,819 - -0.4 807,027 + MPMX19_05274 0.23 -0.5 807,027 + MPMX19_05274 0.23 -0.3 807,027 + MPMX19_05274 0.23 -1.9 807,027 + MPMX19_05274 0.23 +0.3 807,027 + MPMX19_05274 0.23 -0.1 807,028 - MPMX19_05274 0.23 -0.7 807,028 - MPMX19_05274 0.23 -0.3 807,028 - MPMX19_05274 0.23 +1.0 807,051 - MPMX19_05274 0.28 -0.7
Or see this region's nucleotide sequence