Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_05234

Experiment: NF

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_05233 and MPMX19_05234 overlap by 8 nucleotidesMPMX19_05234 and MPMX19_05235 are separated by 2 nucleotidesMPMX19_05235 and MPMX19_05236 are separated by 190 nucleotides MPMX19_05233: MPMX19_05233 - Glycine betaine/proline betaine transport system ATP-binding protein ProV, at 759,549 to 760,730 _05233 MPMX19_05234: MPMX19_05234 - Glycine betaine/choline transport system permease protein OusW, at 760,723 to 761,649 _05234 MPMX19_05235: MPMX19_05235 - HTH-type transcriptional regulator BetI, at 761,652 to 762,227 _05235 MPMX19_05236: MPMX19_05236 - hypothetical protein, at 762,418 to 763,392 _05236 Position (kb) 760 761 762Strain fitness (log2 ratio) -3 -2 -1 0 1at 759.781 kb on + strand, within MPMX19_05233at 759.885 kb on + strand, within MPMX19_05233at 759.885 kb on + strand, within MPMX19_05233at 760.065 kb on + strand, within MPMX19_05233at 760.065 kb on + strand, within MPMX19_05233at 760.065 kb on + strand, within MPMX19_05233at 760.065 kb on + strand, within MPMX19_05233at 760.065 kb on + strand, within MPMX19_05233at 760.065 kb on + strand, within MPMX19_05233at 760.065 kb on + strand, within MPMX19_05233at 760.066 kb on - strand, within MPMX19_05233at 760.066 kb on - strand, within MPMX19_05233at 760.374 kb on + strand, within MPMX19_05233at 760.374 kb on + strand, within MPMX19_05233at 760.374 kb on + strand, within MPMX19_05233at 760.374 kb on + strand, within MPMX19_05233at 760.374 kb on + strand, within MPMX19_05233at 760.374 kb on + strand, within MPMX19_05233at 760.374 kb on + strand, within MPMX19_05233at 760.374 kb on + strand, within MPMX19_05233at 760.374 kb on + strand, within MPMX19_05233at 760.375 kb on - strand, within MPMX19_05233at 760.375 kb on - strand, within MPMX19_05233at 760.375 kb on - strand, within MPMX19_05233at 760.375 kb on - strand, within MPMX19_05233at 760.375 kb on - strand, within MPMX19_05233at 760.375 kb on - strand, within MPMX19_05233at 760.482 kb on + strand, within MPMX19_05233at 761.173 kb on + strand, within MPMX19_05234at 761.173 kb on + strand, within MPMX19_05234at 761.174 kb on - strand, within MPMX19_05234at 761.534 kb on + strand, within MPMX19_05234at 761.534 kb on + strand, within MPMX19_05234at 761.534 kb on + strand, within MPMX19_05234at 761.534 kb on + strand, within MPMX19_05234at 761.534 kb on + strand, within MPMX19_05234at 761.535 kb on - strand, within MPMX19_05234at 761.535 kb on - strand, within MPMX19_05234at 761.535 kb on - strand, within MPMX19_05234at 761.535 kb on - strand, within MPMX19_05234at 761.677 kb on + strandat 761.677 kb on + strandat 761.677 kb on + strandat 761.677 kb on + strandat 761.677 kb on + strandat 761.678 kb on - strandat 761.678 kb on - strandat 762.082 kb on + strand, within MPMX19_05235at 762.082 kb on + strand, within MPMX19_05235at 762.082 kb on + strand, within MPMX19_05235at 762.082 kb on + strand, within MPMX19_05235at 762.082 kb on + strand, within MPMX19_05235at 762.083 kb on - strand, within MPMX19_05235at 762.083 kb on - strand, within MPMX19_05235at 762.083 kb on - strand, within MPMX19_05235at 762.083 kb on - strand, within MPMX19_05235at 762.083 kb on - strand, within MPMX19_05235at 762.083 kb on - strand, within MPMX19_05235at 762.286 kb on + strandat 762.417 kb on + strandat 762.417 kb on + strandat 762.418 kb on - strandat 762.418 kb on - strandat 762.418 kb on - strandat 762.418 kb on - strandat 762.418 kb on - strandat 762.418 kb on - strandat 762.418 kb on - strandat 762.607 kb on + strand, within MPMX19_05236at 762.607 kb on + strand, within MPMX19_05236at 762.608 kb on - strand, within MPMX19_05236at 762.608 kb on - strand, within MPMX19_05236at 762.624 kb on - strand, within MPMX19_05236at 762.646 kb on + strand, within MPMX19_05236at 762.646 kb on + strand, within MPMX19_05236at 762.646 kb on + strand, within MPMX19_05236at 762.646 kb on + strand, within MPMX19_05236at 762.647 kb on - strand, within MPMX19_05236at 762.647 kb on - strand, within MPMX19_05236at 762.647 kb on - strand, within MPMX19_05236at 762.647 kb on - strand, within MPMX19_05236at 762.647 kb on - strand, within MPMX19_05236at 762.648 kb on + strand, within MPMX19_05236at 762.648 kb on + strand, within MPMX19_05236at 762.648 kb on + strand, within MPMX19_05236at 762.648 kb on + strand, within MPMX19_05236at 762.649 kb on - strand, within MPMX19_05236at 762.649 kb on - strand, within MPMX19_05236at 762.649 kb on - strand, within MPMX19_05236at 762.649 kb on - strand, within MPMX19_05236at 762.649 kb on - strand, within MPMX19_05236

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Per-strain Table

Position Strand Gene LocusTag Fraction NF
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759,781 + MPMX19_05233 0.20 -0.4
759,885 + MPMX19_05233 0.28 -0.5
759,885 + MPMX19_05233 0.28 -0.4
760,065 + MPMX19_05233 0.44 +0.2
760,065 + MPMX19_05233 0.44 +0.6
760,065 + MPMX19_05233 0.44 +0.2
760,065 + MPMX19_05233 0.44 +0.5
760,065 + MPMX19_05233 0.44 -1.1
760,065 + MPMX19_05233 0.44 -0.1
760,065 + MPMX19_05233 0.44 -0.4
760,066 - MPMX19_05233 0.44 +0.1
760,066 - MPMX19_05233 0.44 -0.1
760,374 + MPMX19_05233 0.70 -0.7
760,374 + MPMX19_05233 0.70 -1.3
760,374 + MPMX19_05233 0.70 -0.8
760,374 + MPMX19_05233 0.70 -0.5
760,374 + MPMX19_05233 0.70 +0.4
760,374 + MPMX19_05233 0.70 -0.2
760,374 + MPMX19_05233 0.70 -0.0
760,374 + MPMX19_05233 0.70 -0.1
760,374 + MPMX19_05233 0.70 +0.3
760,375 - MPMX19_05233 0.70 -0.8
760,375 - MPMX19_05233 0.70 +1.1
760,375 - MPMX19_05233 0.70 -1.1
760,375 - MPMX19_05233 0.70 -0.9
760,375 - MPMX19_05233 0.70 -0.2
760,375 - MPMX19_05233 0.70 -1.2
760,482 + MPMX19_05233 0.79 +0.3
761,173 + MPMX19_05234 0.49 +0.3
761,173 + MPMX19_05234 0.49 +0.4
761,174 - MPMX19_05234 0.49 -0.9
761,534 + MPMX19_05234 0.87 +0.5
761,534 + MPMX19_05234 0.87 -0.5
761,534 + MPMX19_05234 0.87 +0.2
761,534 + MPMX19_05234 0.87 -0.9
761,534 + MPMX19_05234 0.87 -1.0
761,535 - MPMX19_05234 0.88 +1.2
761,535 - MPMX19_05234 0.88 +0.7
761,535 - MPMX19_05234 0.88 -0.7
761,535 - MPMX19_05234 0.88 +0.1
761,677 + -0.7
761,677 + -0.4
761,677 + +0.8
761,677 + -0.9
761,677 + +0.1
761,678 - +0.6
761,678 - +1.5
762,082 + MPMX19_05235 0.75 -1.4
762,082 + MPMX19_05235 0.75 -0.2
762,082 + MPMX19_05235 0.75 -0.8
762,082 + MPMX19_05235 0.75 -0.2
762,082 + MPMX19_05235 0.75 -0.1
762,083 - MPMX19_05235 0.75 -0.7
762,083 - MPMX19_05235 0.75 -0.9
762,083 - MPMX19_05235 0.75 +1.1
762,083 - MPMX19_05235 0.75 +0.2
762,083 - MPMX19_05235 0.75 -0.4
762,083 - MPMX19_05235 0.75 -1.4
762,286 + -1.2
762,417 + -1.4
762,417 + -0.7
762,418 - -0.1
762,418 - +0.3
762,418 - -0.2
762,418 - -0.5
762,418 - -0.4
762,418 - -1.6
762,418 - +0.5
762,607 + MPMX19_05236 0.19 -2.9
762,607 + MPMX19_05236 0.19 -0.5
762,608 - MPMX19_05236 0.19 -0.5
762,608 - MPMX19_05236 0.19 -0.5
762,624 - MPMX19_05236 0.21 -0.7
762,646 + MPMX19_05236 0.23 +0.1
762,646 + MPMX19_05236 0.23 -0.9
762,646 + MPMX19_05236 0.23 -2.4
762,646 + MPMX19_05236 0.23 -0.4
762,647 - MPMX19_05236 0.23 -0.4
762,647 - MPMX19_05236 0.23 -0.9
762,647 - MPMX19_05236 0.23 -0.3
762,647 - MPMX19_05236 0.23 +0.2
762,647 - MPMX19_05236 0.23 +1.0
762,648 + MPMX19_05236 0.24 -0.5
762,648 + MPMX19_05236 0.24 -0.8
762,648 + MPMX19_05236 0.24 -0.2
762,648 + MPMX19_05236 0.24 -0.4
762,649 - MPMX19_05236 0.24 -0.7
762,649 - MPMX19_05236 0.24 +1.2
762,649 - MPMX19_05236 0.24 -0.2
762,649 - MPMX19_05236 0.24 +1.2
762,649 - MPMX19_05236 0.24 +0.6

Or see this region's nucleotide sequence