Experiment: NF
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_05228 and MPMX19_05229 overlap by 4 nucleotides MPMX19_05229 and MPMX19_05230 are separated by 103 nucleotides MPMX19_05230 and MPMX19_05231 are separated by 272 nucleotides
MPMX19_05228: MPMX19_05228 - Anti-sigma-E factor ChrR, at 754,353 to 755,039
_05228
MPMX19_05229: MPMX19_05229 - ECF RNA polymerase sigma factor RpoE, at 755,036 to 755,659
_05229
MPMX19_05230: MPMX19_05230 - putative MFS-type transporter YcaD, at 755,763 to 757,001
_05230
MPMX19_05231: MPMX19_05231 - 1,2-epoxyphenylacetyl-CoA isomerase, at 757,274 to 758,089
_05231
Position (kb) 755
756
757
758 Strain fitness (log2 ratio) -2
-1
0
1 at 754.903 kb on + strand, within MPMX19_05228 at 754.903 kb on + strand, within MPMX19_05228 at 754.903 kb on + strand, within MPMX19_05228 at 754.903 kb on + strand, within MPMX19_05228 at 754.903 kb on + strand, within MPMX19_05228 at 754.903 kb on + strand, within MPMX19_05228 at 754.904 kb on - strand, within MPMX19_05228 at 754.904 kb on - strand, within MPMX19_05228 at 754.904 kb on - strand, within MPMX19_05228 at 754.904 kb on - strand, within MPMX19_05228 at 754.904 kb on - strand, within MPMX19_05228 at 754.936 kb on + strand, within MPMX19_05228 at 754.936 kb on + strand, within MPMX19_05228 at 754.936 kb on + strand, within MPMX19_05228 at 754.937 kb on - strand, within MPMX19_05228 at 755.095 kb on + strand at 755.157 kb on + strand, within MPMX19_05229 at 755.158 kb on - strand, within MPMX19_05229 at 755.158 kb on - strand, within MPMX19_05229 at 755.158 kb on - strand, within MPMX19_05229 at 755.478 kb on + strand, within MPMX19_05229 at 755.478 kb on + strand, within MPMX19_05229 at 755.478 kb on + strand, within MPMX19_05229 at 755.478 kb on + strand, within MPMX19_05229 at 755.478 kb on + strand, within MPMX19_05229 at 755.479 kb on - strand, within MPMX19_05229 at 755.479 kb on - strand, within MPMX19_05229 at 755.479 kb on - strand, within MPMX19_05229 at 755.479 kb on - strand, within MPMX19_05229 at 755.479 kb on - strand, within MPMX19_05229 at 755.479 kb on - strand, within MPMX19_05229 at 755.479 kb on - strand, within MPMX19_05229 at 755.479 kb on - strand, within MPMX19_05229 at 755.479 kb on - strand, within MPMX19_05229 at 755.479 kb on - strand, within MPMX19_05229 at 755.479 kb on - strand, within MPMX19_05229 at 755.696 kb on - strand at 755.710 kb on - strand at 755.738 kb on + strand at 755.738 kb on + strand at 755.738 kb on + strand at 755.738 kb on + strand at 755.738 kb on + strand at 755.738 kb on + strand at 755.738 kb on + strand at 755.739 kb on - strand at 755.739 kb on - strand at 755.739 kb on - strand at 755.739 kb on - strand at 755.739 kb on - strand at 755.764 kb on + strand at 755.765 kb on - strand at 755.765 kb on - strand at 755.890 kb on + strand, within MPMX19_05230 at 755.890 kb on + strand, within MPMX19_05230 at 755.890 kb on + strand, within MPMX19_05230 at 755.890 kb on + strand, within MPMX19_05230 at 755.890 kb on + strand, within MPMX19_05230 at 755.891 kb on - strand, within MPMX19_05230 at 755.891 kb on - strand, within MPMX19_05230 at 755.891 kb on - strand, within MPMX19_05230 at 755.891 kb on - strand, within MPMX19_05230 at 755.891 kb on - strand, within MPMX19_05230 at 756.052 kb on + strand, within MPMX19_05230 at 756.052 kb on + strand, within MPMX19_05230 at 756.052 kb on + strand, within MPMX19_05230 at 756.052 kb on + strand, within MPMX19_05230 at 756.052 kb on + strand, within MPMX19_05230 at 756.053 kb on - strand, within MPMX19_05230 at 756.053 kb on - strand, within MPMX19_05230 at 756.053 kb on - strand, within MPMX19_05230 at 756.053 kb on - strand, within MPMX19_05230 at 756.053 kb on - strand, within MPMX19_05230 at 756.349 kb on + strand, within MPMX19_05230 at 756.349 kb on + strand, within MPMX19_05230 at 756.349 kb on + strand, within MPMX19_05230 at 756.350 kb on - strand, within MPMX19_05230 at 756.350 kb on - strand, within MPMX19_05230 at 756.350 kb on - strand, within MPMX19_05230 at 756.583 kb on + strand, within MPMX19_05230 at 756.583 kb on + strand, within MPMX19_05230 at 756.584 kb on - strand, within MPMX19_05230 at 756.584 kb on - strand, within MPMX19_05230 at 756.584 kb on - strand, within MPMX19_05230 at 756.598 kb on + strand, within MPMX19_05230 at 756.598 kb on + strand, within MPMX19_05230 at 756.598 kb on + strand, within MPMX19_05230 at 756.598 kb on + strand, within MPMX19_05230 at 756.598 kb on + strand, within MPMX19_05230 at 756.598 kb on + strand, within MPMX19_05230 at 756.598 kb on + strand, within MPMX19_05230 at 756.598 kb on + strand, within MPMX19_05230 at 756.599 kb on - strand, within MPMX19_05230 at 756.599 kb on - strand, within MPMX19_05230 at 756.599 kb on - strand, within MPMX19_05230 at 756.599 kb on - strand, within MPMX19_05230 at 756.599 kb on - strand, within MPMX19_05230 at 756.599 kb on - strand, within MPMX19_05230 at 756.599 kb on - strand, within MPMX19_05230 at 756.599 kb on - strand, within MPMX19_05230 at 756.599 kb on - strand, within MPMX19_05230 at 756.599 kb on - strand, within MPMX19_05230 at 756.667 kb on + strand, within MPMX19_05230 at 756.667 kb on + strand, within MPMX19_05230 at 756.667 kb on + strand, within MPMX19_05230 at 756.667 kb on + strand, within MPMX19_05230 at 756.667 kb on + strand, within MPMX19_05230 at 756.667 kb on + strand, within MPMX19_05230 at 756.667 kb on + strand, within MPMX19_05230 at 756.667 kb on + strand, within MPMX19_05230 at 756.667 kb on + strand, within MPMX19_05230 at 756.667 kb on - strand, within MPMX19_05230 at 756.668 kb on - strand, within MPMX19_05230 at 756.668 kb on - strand, within MPMX19_05230 at 756.668 kb on - strand, within MPMX19_05230 at 756.668 kb on - strand, within MPMX19_05230 at 756.668 kb on - strand, within MPMX19_05230 at 756.668 kb on - strand, within MPMX19_05230 at 756.668 kb on - strand, within MPMX19_05230 at 756.668 kb on - strand, within MPMX19_05230 at 756.668 kb on - strand, within MPMX19_05230 at 756.791 kb on + strand, within MPMX19_05230 at 756.792 kb on - strand, within MPMX19_05230 at 756.823 kb on + strand, within MPMX19_05230 at 756.823 kb on + strand, within MPMX19_05230 at 756.823 kb on + strand, within MPMX19_05230 at 756.823 kb on + strand, within MPMX19_05230 at 756.823 kb on + strand, within MPMX19_05230 at 756.824 kb on - strand, within MPMX19_05230 at 756.850 kb on + strand, within MPMX19_05230 at 756.850 kb on + strand, within MPMX19_05230 at 756.851 kb on - strand, within MPMX19_05230 at 756.851 kb on - strand, within MPMX19_05230 at 756.851 kb on - strand, within MPMX19_05230 at 756.851 kb on - strand, within MPMX19_05230 at 756.851 kb on - strand, within MPMX19_05230 at 756.853 kb on + strand, within MPMX19_05230 at 756.853 kb on + strand, within MPMX19_05230 at 756.853 kb on + strand, within MPMX19_05230 at 756.853 kb on + strand, within MPMX19_05230 at 756.853 kb on + strand, within MPMX19_05230 at 756.853 kb on + strand, within MPMX19_05230 at 756.853 kb on + strand, within MPMX19_05230 at 756.853 kb on + strand, within MPMX19_05230 at 756.853 kb on + strand, within MPMX19_05230 at 756.853 kb on + strand, within MPMX19_05230 at 756.853 kb on + strand, within MPMX19_05230 at 756.854 kb on - strand, within MPMX19_05230 at 756.854 kb on - strand, within MPMX19_05230 at 756.854 kb on - strand, within MPMX19_05230 at 756.854 kb on - strand, within MPMX19_05230 at 756.854 kb on - strand, within MPMX19_05230 at 756.854 kb on - strand, within MPMX19_05230 at 756.854 kb on - strand, within MPMX19_05230 at 756.854 kb on - strand, within MPMX19_05230 at 757.184 kb on - strand at 757.238 kb on + strand at 757.238 kb on + strand at 757.238 kb on + strand at 757.238 kb on + strand at 757.238 kb on + strand at 757.238 kb on + strand at 757.238 kb on + strand at 757.238 kb on + strand at 757.239 kb on - strand at 757.239 kb on - strand at 757.239 kb on - strand at 757.239 kb on - strand at 757.239 kb on - strand at 757.239 kb on - strand at 757.239 kb on - strand at 757.239 kb on - strand at 757.239 kb on - strand at 757.239 kb on - strand at 757.239 kb on - strand at 757.239 kb on - strand at 757.239 kb on - strand at 757.253 kb on - strand at 757.582 kb on - strand, within MPMX19_05231 at 757.706 kb on + strand, within MPMX19_05231 at 757.706 kb on + strand, within MPMX19_05231 at 757.706 kb on + strand, within MPMX19_05231 at 757.706 kb on + strand, within MPMX19_05231 at 757.706 kb on + strand, within MPMX19_05231 at 757.706 kb on + strand, within MPMX19_05231 at 757.706 kb on + strand, within MPMX19_05231 at 757.707 kb on - strand, within MPMX19_05231 at 757.707 kb on - strand, within MPMX19_05231 at 757.707 kb on - strand, within MPMX19_05231 at 757.707 kb on - strand, within MPMX19_05231 at 757.707 kb on - strand, within MPMX19_05231 at 757.707 kb on - strand, within MPMX19_05231 at 757.707 kb on - strand, within MPMX19_05231 at 757.707 kb on - strand, within MPMX19_05231 at 757.707 kb on - strand, within MPMX19_05231 at 757.707 kb on - strand, within MPMX19_05231 at 757.707 kb on - strand, within MPMX19_05231 at 757.707 kb on - strand, within MPMX19_05231 at 757.707 kb on - strand, within MPMX19_05231 at 757.707 kb on - strand, within MPMX19_05231 at 757.925 kb on + strand, within MPMX19_05231 at 757.926 kb on - strand, within MPMX19_05231
Per-strain Table
Position Strand Gene LocusTag Fraction NF remove 754,903 + MPMX19_05228 0.80 -0.9 754,903 + MPMX19_05228 0.80 +0.5 754,903 + MPMX19_05228 0.80 -0.4 754,903 + MPMX19_05228 0.80 +1.1 754,903 + MPMX19_05228 0.80 -1.7 754,903 + MPMX19_05228 0.80 -1.8 754,904 - MPMX19_05228 0.80 +0.1 754,904 - MPMX19_05228 0.80 +0.6 754,904 - MPMX19_05228 0.80 -1.4 754,904 - MPMX19_05228 0.80 +0.2 754,904 - MPMX19_05228 0.80 -0.9 754,936 + MPMX19_05228 0.85 -0.3 754,936 + MPMX19_05228 0.85 -1.9 754,936 + MPMX19_05228 0.85 -0.9 754,937 - MPMX19_05228 0.85 -0.4 755,095 + -1.1 755,157 + MPMX19_05229 0.19 -0.9 755,158 - MPMX19_05229 0.20 +0.3 755,158 - MPMX19_05229 0.20 +0.5 755,158 - MPMX19_05229 0.20 +0.1 755,478 + MPMX19_05229 0.71 -0.3 755,478 + MPMX19_05229 0.71 -0.5 755,478 + MPMX19_05229 0.71 -1.4 755,478 + MPMX19_05229 0.71 +0.1 755,478 + MPMX19_05229 0.71 -1.2 755,479 - MPMX19_05229 0.71 -0.7 755,479 - MPMX19_05229 0.71 -0.9 755,479 - MPMX19_05229 0.71 +0.2 755,479 - MPMX19_05229 0.71 -1.6 755,479 - MPMX19_05229 0.71 -0.3 755,479 - MPMX19_05229 0.71 -0.7 755,479 - MPMX19_05229 0.71 -0.6 755,479 - MPMX19_05229 0.71 +0.5 755,479 - MPMX19_05229 0.71 +0.3 755,479 - MPMX19_05229 0.71 -0.4 755,479 - MPMX19_05229 0.71 -1.1 755,696 - -0.8 755,710 - -0.1 755,738 + -0.3 755,738 + -0.4 755,738 + -0.5 755,738 + -1.7 755,738 + -1.2 755,738 + -0.4 755,738 + -0.4 755,739 - -1.5 755,739 - -0.9 755,739 - -0.4 755,739 - -1.4 755,739 - +0.8 755,764 + +0.6 755,765 - -0.5 755,765 - -0.4 755,890 + MPMX19_05230 0.10 +0.2 755,890 + MPMX19_05230 0.10 +0.3 755,890 + MPMX19_05230 0.10 -0.5 755,890 + MPMX19_05230 0.10 -0.9 755,890 + MPMX19_05230 0.10 -0.8 755,891 - MPMX19_05230 0.10 -2.4 755,891 - MPMX19_05230 0.10 -0.4 755,891 - MPMX19_05230 0.10 -1.8 755,891 - MPMX19_05230 0.10 -2.4 755,891 - MPMX19_05230 0.10 -0.2 756,052 + MPMX19_05230 0.23 -0.9 756,052 + MPMX19_05230 0.23 -1.4 756,052 + MPMX19_05230 0.23 -1.4 756,052 + MPMX19_05230 0.23 -0.5 756,052 + MPMX19_05230 0.23 -0.2 756,053 - MPMX19_05230 0.23 +1.0 756,053 - MPMX19_05230 0.23 -1.4 756,053 - MPMX19_05230 0.23 +0.9 756,053 - MPMX19_05230 0.23 +0.3 756,053 - MPMX19_05230 0.23 -0.1 756,349 + MPMX19_05230 0.47 -0.4 756,349 + MPMX19_05230 0.47 -0.4 756,349 + MPMX19_05230 0.47 -0.1 756,350 - MPMX19_05230 0.47 +0.1 756,350 - MPMX19_05230 0.47 -2.4 756,350 - MPMX19_05230 0.47 +0.7 756,583 + MPMX19_05230 0.66 -0.4 756,583 + MPMX19_05230 0.66 -1.5 756,584 - MPMX19_05230 0.66 +0.1 756,584 - MPMX19_05230 0.66 -1.5 756,584 - MPMX19_05230 0.66 +1.6 756,598 + MPMX19_05230 0.67 +0.1 756,598 + MPMX19_05230 0.67 -0.7 756,598 + MPMX19_05230 0.67 +0.2 756,598 + MPMX19_05230 0.67 -1.0 756,598 + MPMX19_05230 0.67 -0.6 756,598 + MPMX19_05230 0.67 +0.9 756,598 + MPMX19_05230 0.67 -2.3 756,598 + MPMX19_05230 0.67 -0.2 756,599 - MPMX19_05230 0.67 +0.4 756,599 - MPMX19_05230 0.67 +0.2 756,599 - MPMX19_05230 0.67 -0.3 756,599 - MPMX19_05230 0.67 -1.2 756,599 - MPMX19_05230 0.67 -0.4 756,599 - MPMX19_05230 0.67 -1.8 756,599 - MPMX19_05230 0.67 -0.2 756,599 - MPMX19_05230 0.67 -0.4 756,599 - MPMX19_05230 0.67 -1.2 756,599 - MPMX19_05230 0.67 +0.1 756,667 + MPMX19_05230 0.73 -1.4 756,667 + MPMX19_05230 0.73 +0.2 756,667 + MPMX19_05230 0.73 -0.8 756,667 + MPMX19_05230 0.73 -0.7 756,667 + MPMX19_05230 0.73 -0.4 756,667 + MPMX19_05230 0.73 -0.7 756,667 + MPMX19_05230 0.73 -0.5 756,667 + MPMX19_05230 0.73 -0.5 756,667 + MPMX19_05230 0.73 -1.5 756,667 - MPMX19_05230 0.73 -0.2 756,668 - MPMX19_05230 0.73 -1.2 756,668 - MPMX19_05230 0.73 -0.9 756,668 - MPMX19_05230 0.73 -0.5 756,668 - MPMX19_05230 0.73 -0.1 756,668 - MPMX19_05230 0.73 -1.2 756,668 - MPMX19_05230 0.73 +0.2 756,668 - MPMX19_05230 0.73 -2.7 756,668 - MPMX19_05230 0.73 -1.1 756,668 - MPMX19_05230 0.73 -0.5 756,791 + MPMX19_05230 0.83 -1.4 756,792 - MPMX19_05230 0.83 +1.4 756,823 + MPMX19_05230 0.86 +0.1 756,823 + MPMX19_05230 0.86 -0.0 756,823 + MPMX19_05230 0.86 +0.7 756,823 + MPMX19_05230 0.86 -0.5 756,823 + MPMX19_05230 0.86 -0.2 756,824 - MPMX19_05230 0.86 -1.4 756,850 + MPMX19_05230 0.88 -0.3 756,850 + MPMX19_05230 0.88 -0.1 756,851 - MPMX19_05230 0.88 +0.4 756,851 - MPMX19_05230 0.88 -0.8 756,851 - MPMX19_05230 0.88 -1.4 756,851 - MPMX19_05230 0.88 -0.8 756,851 - MPMX19_05230 0.88 +0.9 756,853 + MPMX19_05230 0.88 -1.5 756,853 + MPMX19_05230 0.88 -1.7 756,853 + MPMX19_05230 0.88 -0.3 756,853 + MPMX19_05230 0.88 +0.5 756,853 + MPMX19_05230 0.88 -0.3 756,853 + MPMX19_05230 0.88 +1.1 756,853 + MPMX19_05230 0.88 -0.2 756,853 + MPMX19_05230 0.88 -0.7 756,853 + MPMX19_05230 0.88 -1.0 756,853 + MPMX19_05230 0.88 -0.9 756,853 + MPMX19_05230 0.88 -0.9 756,854 - MPMX19_05230 0.88 -0.8 756,854 - MPMX19_05230 0.88 -0.2 756,854 - MPMX19_05230 0.88 -1.2 756,854 - MPMX19_05230 0.88 +0.4 756,854 - MPMX19_05230 0.88 -0.4 756,854 - MPMX19_05230 0.88 +0.7 756,854 - MPMX19_05230 0.88 -1.9 756,854 - MPMX19_05230 0.88 +0.4 757,184 - -0.4 757,238 + +0.1 757,238 + +1.1 757,238 + +0.9 757,238 + +0.2 757,238 + -0.4 757,238 + -0.6 757,238 + +0.3 757,238 + -0.8 757,239 - -0.0 757,239 - -0.4 757,239 - -1.5 757,239 - -1.2 757,239 - -0.8 757,239 - +0.2 757,239 - -1.4 757,239 - -1.4 757,239 - -0.4 757,239 - +0.3 757,239 - +0.1 757,239 - -1.4 757,239 - -1.1 757,253 - +0.1 757,582 - MPMX19_05231 0.38 +1.6 757,706 + MPMX19_05231 0.53 -0.1 757,706 + MPMX19_05231 0.53 +0.0 757,706 + MPMX19_05231 0.53 +0.1 757,706 + MPMX19_05231 0.53 +0.2 757,706 + MPMX19_05231 0.53 -0.6 757,706 + MPMX19_05231 0.53 -0.6 757,706 + MPMX19_05231 0.53 -1.6 757,707 - MPMX19_05231 0.53 -0.5 757,707 - MPMX19_05231 0.53 -0.2 757,707 - MPMX19_05231 0.53 -1.2 757,707 - MPMX19_05231 0.53 -1.5 757,707 - MPMX19_05231 0.53 +1.6 757,707 - MPMX19_05231 0.53 +0.9 757,707 - MPMX19_05231 0.53 -0.1 757,707 - MPMX19_05231 0.53 -0.6 757,707 - MPMX19_05231 0.53 -0.8 757,707 - MPMX19_05231 0.53 +0.3 757,707 - MPMX19_05231 0.53 +1.4 757,707 - MPMX19_05231 0.53 -2.4 757,707 - MPMX19_05231 0.53 -0.2 757,707 - MPMX19_05231 0.53 -1.7 757,925 + MPMX19_05231 0.80 +0.6 757,926 - MPMX19_05231 0.80 -0.9
Or see this region's nucleotide sequence