Experiment: NF
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_05203 and MPMX19_05204 overlap by 4 nucleotides MPMX19_05204 and MPMX19_05205 are separated by 4 nucleotides MPMX19_05205 and MPMX19_05206 are separated by 482 nucleotides
MPMX19_05203: MPMX19_05203 - hypothetical protein, at 707,604 to 708,515
_05203
MPMX19_05204: MPMX19_05204 - Vitamin B12 import ATP-binding protein BtuD, at 708,512 to 709,348
_05204
MPMX19_05205: MPMX19_05205 - hypothetical protein, at 709,353 to 710,384
_05205
MPMX19_05206: MPMX19_05206 - Toxin RTX-I translocation ATP-binding protein, at 710,867 to 713,029
_05206
Position (kb) 709
710
711 Strain fitness (log2 ratio) -2
-1
0
1
2 at 708.442 kb on + strand at 708.442 kb on + strand at 708.442 kb on + strand at 708.442 kb on + strand at 708.443 kb on - strand at 708.443 kb on - strand at 708.443 kb on - strand at 708.443 kb on - strand at 708.443 kb on - strand at 708.443 kb on - strand at 708.443 kb on - strand at 708.622 kb on - strand, within MPMX19_05204 at 709.191 kb on + strand, within MPMX19_05204 at 709.191 kb on + strand, within MPMX19_05204 at 709.191 kb on + strand, within MPMX19_05204 at 709.191 kb on + strand, within MPMX19_05204 at 709.191 kb on + strand, within MPMX19_05204 at 709.191 kb on + strand, within MPMX19_05204 at 709.191 kb on + strand, within MPMX19_05204 at 709.191 kb on + strand, within MPMX19_05204 at 709.191 kb on + strand, within MPMX19_05204 at 709.191 kb on + strand, within MPMX19_05204 at 709.191 kb on + strand, within MPMX19_05204 at 709.191 kb on + strand, within MPMX19_05204 at 709.191 kb on + strand, within MPMX19_05204 at 709.191 kb on + strand, within MPMX19_05204 at 709.191 kb on + strand, within MPMX19_05204 at 709.191 kb on + strand, within MPMX19_05204 at 709.228 kb on - strand, within MPMX19_05204 at 709.228 kb on - strand, within MPMX19_05204 at 709.228 kb on - strand, within MPMX19_05204 at 709.228 kb on - strand, within MPMX19_05204 at 709.228 kb on - strand, within MPMX19_05204 at 709.228 kb on - strand, within MPMX19_05204 at 709.260 kb on + strand, within MPMX19_05204 at 709.260 kb on + strand, within MPMX19_05204 at 709.260 kb on + strand, within MPMX19_05204 at 709.260 kb on + strand, within MPMX19_05204 at 709.260 kb on + strand, within MPMX19_05204 at 709.260 kb on + strand, within MPMX19_05204 at 709.260 kb on + strand, within MPMX19_05204 at 709.260 kb on + strand, within MPMX19_05204 at 709.260 kb on + strand, within MPMX19_05204 at 709.260 kb on + strand, within MPMX19_05204 at 709.260 kb on + strand, within MPMX19_05204 at 709.260 kb on + strand, within MPMX19_05204 at 709.332 kb on + strand at 709.333 kb on - strand at 709.390 kb on + strand at 709.390 kb on + strand at 709.390 kb on + strand at 709.390 kb on + strand at 709.391 kb on - strand at 709.391 kb on - strand at 709.391 kb on - strand at 709.391 kb on - strand at 709.391 kb on - strand at 709.628 kb on - strand, within MPMX19_05205 at 709.628 kb on - strand, within MPMX19_05205 at 709.628 kb on - strand, within MPMX19_05205 at 709.705 kb on + strand, within MPMX19_05205 at 709.705 kb on + strand, within MPMX19_05205 at 709.705 kb on + strand, within MPMX19_05205 at 709.706 kb on - strand, within MPMX19_05205 at 709.706 kb on - strand, within MPMX19_05205 at 709.706 kb on - strand, within MPMX19_05205 at 709.751 kb on - strand, within MPMX19_05205 at 709.800 kb on + strand, within MPMX19_05205 at 710.242 kb on + strand, within MPMX19_05205 at 710.254 kb on + strand, within MPMX19_05205 at 710.549 kb on + strand at 710.644 kb on + strand at 710.644 kb on + strand at 710.648 kb on + strand at 710.649 kb on - strand at 710.674 kb on + strand at 710.920 kb on + strand at 710.920 kb on + strand at 710.920 kb on + strand at 710.920 kb on + strand at 710.920 kb on + strand at 710.920 kb on + strand at 710.921 kb on - strand at 710.921 kb on - strand at 710.921 kb on - strand at 711.125 kb on + strand, within MPMX19_05206 at 711.125 kb on + strand, within MPMX19_05206 at 711.125 kb on + strand, within MPMX19_05206 at 711.125 kb on + strand, within MPMX19_05206 at 711.126 kb on - strand, within MPMX19_05206 at 711.126 kb on - strand, within MPMX19_05206 at 711.320 kb on + strand, within MPMX19_05206 at 711.320 kb on + strand, within MPMX19_05206 at 711.320 kb on + strand, within MPMX19_05206
Per-strain Table
Position Strand Gene LocusTag Fraction NF remove 708,442 + +0.9 708,442 + -0.5 708,442 + -1.2 708,442 + -1.2 708,443 - +1.3 708,443 - +0.8 708,443 - -1.2 708,443 - -1.0 708,443 - -0.9 708,443 - -0.2 708,443 - -1.4 708,622 - MPMX19_05204 0.13 -0.7 709,191 + MPMX19_05204 0.81 -1.5 709,191 + MPMX19_05204 0.81 +2.0 709,191 + MPMX19_05204 0.81 -0.4 709,191 + MPMX19_05204 0.81 -1.5 709,191 + MPMX19_05204 0.81 -0.7 709,191 + MPMX19_05204 0.81 +0.6 709,191 + MPMX19_05204 0.81 -0.2 709,191 + MPMX19_05204 0.81 -0.5 709,191 + MPMX19_05204 0.81 -0.9 709,191 + MPMX19_05204 0.81 -0.3 709,191 + MPMX19_05204 0.81 -0.4 709,191 + MPMX19_05204 0.81 -1.2 709,191 + MPMX19_05204 0.81 -0.5 709,191 + MPMX19_05204 0.81 -0.1 709,191 + MPMX19_05204 0.81 +1.0 709,191 + MPMX19_05204 0.81 -0.9 709,228 - MPMX19_05204 0.86 +0.1 709,228 - MPMX19_05204 0.86 -0.1 709,228 - MPMX19_05204 0.86 -0.5 709,228 - MPMX19_05204 0.86 -1.0 709,228 - MPMX19_05204 0.86 +0.6 709,228 - MPMX19_05204 0.86 -2.1 709,260 + MPMX19_05204 0.89 +0.5 709,260 + MPMX19_05204 0.89 -0.3 709,260 + MPMX19_05204 0.89 +1.2 709,260 + MPMX19_05204 0.89 +0.8 709,260 + MPMX19_05204 0.89 +0.9 709,260 + MPMX19_05204 0.89 +0.2 709,260 + MPMX19_05204 0.89 -0.0 709,260 + MPMX19_05204 0.89 -0.3 709,260 + MPMX19_05204 0.89 -0.2 709,260 + MPMX19_05204 0.89 -1.5 709,260 + MPMX19_05204 0.89 -1.0 709,260 + MPMX19_05204 0.89 -0.3 709,332 + +1.2 709,333 - +0.6 709,390 + -1.2 709,390 + +1.2 709,390 + +0.3 709,390 + +1.1 709,391 - +0.1 709,391 - -0.2 709,391 - -0.1 709,391 - +1.6 709,391 - -0.4 709,628 - MPMX19_05205 0.27 +0.4 709,628 - MPMX19_05205 0.27 +0.5 709,628 - MPMX19_05205 0.27 -0.2 709,705 + MPMX19_05205 0.34 +1.3 709,705 + MPMX19_05205 0.34 +0.1 709,705 + MPMX19_05205 0.34 +1.4 709,706 - MPMX19_05205 0.34 -0.4 709,706 - MPMX19_05205 0.34 +0.6 709,706 - MPMX19_05205 0.34 +0.2 709,751 - MPMX19_05205 0.39 -0.1 709,800 + MPMX19_05205 0.43 -1.7 710,242 + MPMX19_05205 0.86 -0.9 710,254 + MPMX19_05205 0.87 +0.7 710,549 + -1.4 710,644 + -0.4 710,644 + -0.9 710,648 + -1.6 710,649 - +1.2 710,674 + +0.1 710,920 + -0.7 710,920 + -1.1 710,920 + -0.9 710,920 + -0.0 710,920 + -1.0 710,920 + +1.0 710,921 - +0.1 710,921 - +0.1 710,921 - +0.8 711,125 + MPMX19_05206 0.12 -0.3 711,125 + MPMX19_05206 0.12 -1.0 711,125 + MPMX19_05206 0.12 -1.4 711,125 + MPMX19_05206 0.12 -1.8 711,126 - MPMX19_05206 0.12 -0.1 711,126 - MPMX19_05206 0.12 +2.2 711,320 + MPMX19_05206 0.21 -0.1 711,320 + MPMX19_05206 0.21 -0.6 711,320 + MPMX19_05206 0.21 -1.1
Or see this region's nucleotide sequence