Experiment: NF
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_05197 and MPMX19_05198 are separated by 27 nucleotides MPMX19_05198 and MPMX19_05199 are separated by 190 nucleotides MPMX19_05199 and MPMX19_05200 are separated by 124 nucleotides
MPMX19_05197: MPMX19_05197 - Inducible ornithine decarboxylase, at 699,833 to 702,193
_05197
MPMX19_05198: MPMX19_05198 - hypothetical protein, at 702,221 to 702,877
_05198
MPMX19_05199: MPMX19_05199 - Zinc transport protein ZntB, at 703,068 to 704,078
_05199
MPMX19_05200: MPMX19_05200 - Hydroxypyruvate reductase, at 704,203 to 705,213
_05200
Position (kb) 703
704
705 Strain fitness (log2 ratio) -2
-1
0
1
2 at 702.501 kb on + strand, within MPMX19_05198 at 702.505 kb on + strand, within MPMX19_05198 at 702.506 kb on - strand, within MPMX19_05198 at 702.506 kb on - strand, within MPMX19_05198 at 702.513 kb on + strand, within MPMX19_05198 at 702.513 kb on + strand, within MPMX19_05198 at 702.513 kb on + strand, within MPMX19_05198 at 702.513 kb on + strand, within MPMX19_05198 at 702.513 kb on + strand, within MPMX19_05198 at 702.514 kb on - strand, within MPMX19_05198 at 702.514 kb on - strand, within MPMX19_05198 at 702.514 kb on - strand, within MPMX19_05198 at 702.534 kb on + strand, within MPMX19_05198 at 702.534 kb on + strand, within MPMX19_05198 at 702.534 kb on + strand, within MPMX19_05198 at 702.534 kb on + strand, within MPMX19_05198 at 702.535 kb on - strand, within MPMX19_05198 at 702.535 kb on - strand, within MPMX19_05198 at 702.570 kb on + strand, within MPMX19_05198 at 702.571 kb on - strand, within MPMX19_05198 at 702.576 kb on + strand, within MPMX19_05198 at 702.577 kb on - strand, within MPMX19_05198 at 702.706 kb on + strand, within MPMX19_05198 at 702.711 kb on + strand, within MPMX19_05198 at 702.711 kb on + strand, within MPMX19_05198 at 702.711 kb on + strand, within MPMX19_05198 at 702.712 kb on - strand, within MPMX19_05198 at 702.717 kb on + strand, within MPMX19_05198 at 702.717 kb on + strand, within MPMX19_05198 at 702.717 kb on + strand, within MPMX19_05198 at 702.717 kb on + strand, within MPMX19_05198 at 702.717 kb on + strand, within MPMX19_05198 at 702.717 kb on + strand, within MPMX19_05198 at 702.718 kb on - strand, within MPMX19_05198 at 702.718 kb on - strand, within MPMX19_05198 at 702.718 kb on - strand, within MPMX19_05198 at 702.718 kb on - strand, within MPMX19_05198 at 702.718 kb on - strand, within MPMX19_05198 at 702.718 kb on - strand, within MPMX19_05198 at 702.718 kb on - strand, within MPMX19_05198 at 702.718 kb on - strand, within MPMX19_05198 at 703.010 kb on + strand at 703.067 kb on + strand at 703.116 kb on + strand at 703.116 kb on + strand at 703.123 kb on + strand at 703.124 kb on - strand at 703.362 kb on + strand, within MPMX19_05199 at 703.362 kb on + strand, within MPMX19_05199 at 703.362 kb on + strand, within MPMX19_05199 at 703.362 kb on + strand, within MPMX19_05199 at 703.362 kb on + strand, within MPMX19_05199 at 703.363 kb on - strand, within MPMX19_05199 at 703.363 kb on - strand, within MPMX19_05199 at 703.363 kb on - strand, within MPMX19_05199 at 703.363 kb on - strand, within MPMX19_05199 at 703.363 kb on - strand, within MPMX19_05199 at 703.363 kb on - strand, within MPMX19_05199 at 703.497 kb on + strand, within MPMX19_05199 at 703.497 kb on + strand, within MPMX19_05199 at 703.498 kb on - strand, within MPMX19_05199 at 703.620 kb on + strand, within MPMX19_05199 at 703.798 kb on - strand, within MPMX19_05199 at 703.798 kb on - strand, within MPMX19_05199 at 704.606 kb on - strand, within MPMX19_05200 at 704.606 kb on - strand, within MPMX19_05200 at 704.606 kb on - strand, within MPMX19_05200
Per-strain Table
Position Strand Gene LocusTag Fraction NF remove 702,501 + MPMX19_05198 0.43 -0.7 702,505 + MPMX19_05198 0.43 -1.2 702,506 - MPMX19_05198 0.43 +0.3 702,506 - MPMX19_05198 0.43 -1.4 702,513 + MPMX19_05198 0.44 +0.6 702,513 + MPMX19_05198 0.44 +1.5 702,513 + MPMX19_05198 0.44 -0.3 702,513 + MPMX19_05198 0.44 -0.8 702,513 + MPMX19_05198 0.44 -2.1 702,514 - MPMX19_05198 0.45 -2.0 702,514 - MPMX19_05198 0.45 -1.6 702,514 - MPMX19_05198 0.45 +1.0 702,534 + MPMX19_05198 0.48 -1.5 702,534 + MPMX19_05198 0.48 +0.1 702,534 + MPMX19_05198 0.48 +0.8 702,534 + MPMX19_05198 0.48 -0.3 702,535 - MPMX19_05198 0.48 -0.7 702,535 - MPMX19_05198 0.48 +0.4 702,570 + MPMX19_05198 0.53 -0.2 702,571 - MPMX19_05198 0.53 -0.2 702,576 + MPMX19_05198 0.54 -0.7 702,577 - MPMX19_05198 0.54 +1.5 702,706 + MPMX19_05198 0.74 -1.4 702,711 + MPMX19_05198 0.75 +1.3 702,711 + MPMX19_05198 0.75 +0.1 702,711 + MPMX19_05198 0.75 +1.9 702,712 - MPMX19_05198 0.75 -0.1 702,717 + MPMX19_05198 0.75 -1.8 702,717 + MPMX19_05198 0.75 +0.8 702,717 + MPMX19_05198 0.75 +0.6 702,717 + MPMX19_05198 0.75 +0.3 702,717 + MPMX19_05198 0.75 +0.7 702,717 + MPMX19_05198 0.75 +0.3 702,718 - MPMX19_05198 0.76 +0.6 702,718 - MPMX19_05198 0.76 +0.8 702,718 - MPMX19_05198 0.76 +2.1 702,718 - MPMX19_05198 0.76 +1.3 702,718 - MPMX19_05198 0.76 -0.9 702,718 - MPMX19_05198 0.76 -0.5 702,718 - MPMX19_05198 0.76 -1.4 702,718 - MPMX19_05198 0.76 +1.1 703,010 + -0.1 703,067 + +0.1 703,116 + +0.2 703,116 + +0.8 703,123 + -1.4 703,124 - +0.6 703,362 + MPMX19_05199 0.29 -0.7 703,362 + MPMX19_05199 0.29 +1.0 703,362 + MPMX19_05199 0.29 +0.1 703,362 + MPMX19_05199 0.29 -1.7 703,362 + MPMX19_05199 0.29 -0.1 703,363 - MPMX19_05199 0.29 +0.6 703,363 - MPMX19_05199 0.29 -0.7 703,363 - MPMX19_05199 0.29 -0.1 703,363 - MPMX19_05199 0.29 +0.4 703,363 - MPMX19_05199 0.29 -0.3 703,363 - MPMX19_05199 0.29 -0.2 703,497 + MPMX19_05199 0.42 +0.9 703,497 + MPMX19_05199 0.42 +0.2 703,498 - MPMX19_05199 0.43 -0.7 703,620 + MPMX19_05199 0.55 -0.4 703,798 - MPMX19_05199 0.72 -0.9 703,798 - MPMX19_05199 0.72 -0.9 704,606 - MPMX19_05200 0.40 +0.1 704,606 - MPMX19_05200 0.40 -0.7 704,606 - MPMX19_05200 0.40 +0.1
Or see this region's nucleotide sequence