Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_05178

Experiment: NF

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_05176 and MPMX19_05177 are separated by 27 nucleotidesMPMX19_05177 and MPMX19_05178 are separated by 7 nucleotidesMPMX19_05178 and MPMX19_05179 are separated by 48 nucleotides MPMX19_05176: MPMX19_05176 - 4-hydroxy-3-prenylphenylpyruvate oxygenase/4-hydroxy-3-prenylbenzoate synthase, at 679,563 to 680,348 _05176 MPMX19_05177: MPMX19_05177 - Glyoxylate/hydroxypyruvate reductase A, at 680,376 to 681,335 _05177 MPMX19_05178: MPMX19_05178 - Alkanesulfonate monooxygenase, at 681,343 to 682,467 _05178 MPMX19_05179: MPMX19_05179 - Putative aliphatic sulfonates-binding protein, at 682,516 to 683,529 _05179 Position (kb) 681 682 683Strain fitness (log2 ratio) -2 -1 0 1 2at 680.381 kb on - strandat 680.429 kb on - strandat 680.429 kb on - strandat 680.429 kb on - strandat 680.429 kb on - strandat 680.429 kb on - strandat 680.429 kb on - strandat 680.429 kb on - strandat 680.429 kb on - strandat 680.429 kb on - strandat 680.429 kb on - strandat 680.528 kb on - strand, within MPMX19_05177at 680.528 kb on - strand, within MPMX19_05177at 680.528 kb on - strand, within MPMX19_05177at 680.528 kb on - strand, within MPMX19_05177at 681.010 kb on + strand, within MPMX19_05177at 681.010 kb on + strand, within MPMX19_05177at 681.010 kb on + strand, within MPMX19_05177at 681.011 kb on - strand, within MPMX19_05177at 681.085 kb on + strand, within MPMX19_05177at 681.085 kb on + strand, within MPMX19_05177at 681.085 kb on + strand, within MPMX19_05177at 681.131 kb on + strand, within MPMX19_05177at 681.344 kb on + strandat 681.345 kb on - strandat 681.698 kb on + strand, within MPMX19_05178at 681.698 kb on + strand, within MPMX19_05178at 681.698 kb on + strand, within MPMX19_05178at 681.699 kb on - strand, within MPMX19_05178at 681.699 kb on - strand, within MPMX19_05178at 681.699 kb on - strand, within MPMX19_05178at 681.860 kb on + strand, within MPMX19_05178at 681.860 kb on + strand, within MPMX19_05178at 681.860 kb on + strand, within MPMX19_05178at 681.861 kb on - strand, within MPMX19_05178at 681.861 kb on - strand, within MPMX19_05178at 681.861 kb on - strand, within MPMX19_05178at 681.942 kb on - strand, within MPMX19_05178at 681.942 kb on - strand, within MPMX19_05178at 681.942 kb on - strand, within MPMX19_05178at 681.942 kb on - strand, within MPMX19_05178at 681.942 kb on - strand, within MPMX19_05178at 682.058 kb on + strand, within MPMX19_05178at 682.059 kb on - strand, within MPMX19_05178at 682.518 kb on - strandat 682.518 kb on - strandat 682.799 kb on + strand, within MPMX19_05179at 682.857 kb on - strand, within MPMX19_05179at 682.857 kb on - strand, within MPMX19_05179at 682.857 kb on - strand, within MPMX19_05179at 682.857 kb on - strand, within MPMX19_05179at 682.862 kb on + strand, within MPMX19_05179at 682.862 kb on + strand, within MPMX19_05179at 682.862 kb on + strand, within MPMX19_05179at 682.862 kb on + strand, within MPMX19_05179at 682.862 kb on + strand, within MPMX19_05179at 682.862 kb on + strand, within MPMX19_05179at 682.862 kb on + strand, within MPMX19_05179at 682.863 kb on - strand, within MPMX19_05179at 682.863 kb on - strand, within MPMX19_05179at 682.863 kb on - strand, within MPMX19_05179at 682.863 kb on - strand, within MPMX19_05179at 682.863 kb on - strand, within MPMX19_05179at 682.863 kb on - strand, within MPMX19_05179at 682.863 kb on - strand, within MPMX19_05179at 682.863 kb on - strand, within MPMX19_05179at 682.863 kb on - strand, within MPMX19_05179at 682.863 kb on - strand, within MPMX19_05179at 682.863 kb on - strand, within MPMX19_05179at 682.863 kb on - strand, within MPMX19_05179at 682.863 kb on - strand, within MPMX19_05179at 682.863 kb on - strand, within MPMX19_05179at 682.863 kb on - strand, within MPMX19_05179at 682.863 kb on - strand, within MPMX19_05179at 682.863 kb on - strand, within MPMX19_05179at 682.863 kb on - strand, within MPMX19_05179at 682.877 kb on + strand, within MPMX19_05179at 682.935 kb on - strand, within MPMX19_05179at 682.935 kb on - strand, within MPMX19_05179at 682.941 kb on - strand, within MPMX19_05179at 682.941 kb on - strand, within MPMX19_05179at 682.941 kb on - strand, within MPMX19_05179at 682.941 kb on - strand, within MPMX19_05179at 682.941 kb on - strand, within MPMX19_05179at 682.941 kb on - strand, within MPMX19_05179at 682.941 kb on - strand, within MPMX19_05179at 682.941 kb on - strand, within MPMX19_05179at 683.061 kb on - strand, within MPMX19_05179at 683.061 kb on - strand, within MPMX19_05179at 683.061 kb on - strand, within MPMX19_05179at 683.061 kb on - strand, within MPMX19_05179at 683.061 kb on - strand, within MPMX19_05179at 683.061 kb on - strand, within MPMX19_05179at 683.061 kb on - strand, within MPMX19_05179at 683.061 kb on - strand, within MPMX19_05179at 683.061 kb on - strand, within MPMX19_05179at 683.061 kb on - strand, within MPMX19_05179at 683.061 kb on - strand, within MPMX19_05179at 683.061 kb on - strand, within MPMX19_05179at 683.064 kb on - strand, within MPMX19_05179at 683.064 kb on - strand, within MPMX19_05179at 683.064 kb on - strand, within MPMX19_05179at 683.064 kb on - strand, within MPMX19_05179at 683.064 kb on - strand, within MPMX19_05179at 683.064 kb on - strand, within MPMX19_05179at 683.064 kb on - strand, within MPMX19_05179at 683.064 kb on - strand, within MPMX19_05179at 683.064 kb on - strand, within MPMX19_05179at 683.064 kb on - strand, within MPMX19_05179at 683.064 kb on - strand, within MPMX19_05179at 683.087 kb on + strand, within MPMX19_05179at 683.087 kb on + strand, within MPMX19_05179at 683.087 kb on + strand, within MPMX19_05179at 683.087 kb on + strand, within MPMX19_05179at 683.087 kb on + strand, within MPMX19_05179at 683.087 kb on + strand, within MPMX19_05179at 683.087 kb on + strand, within MPMX19_05179at 683.087 kb on + strand, within MPMX19_05179at 683.375 kb on + strand, within MPMX19_05179at 683.375 kb on + strand, within MPMX19_05179at 683.375 kb on + strand, within MPMX19_05179at 683.375 kb on + strand, within MPMX19_05179at 683.375 kb on + strand, within MPMX19_05179at 683.375 kb on + strand, within MPMX19_05179

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Per-strain Table

Position Strand Gene LocusTag Fraction NF
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680,381 - -1.4
680,429 - +0.3
680,429 - -0.6
680,429 - +0.5
680,429 - -2.1
680,429 - -2.4
680,429 - +0.4
680,429 - +0.1
680,429 - -1.2
680,429 - +0.6
680,429 - -0.3
680,528 - MPMX19_05177 0.16 +0.6
680,528 - MPMX19_05177 0.16 -1.8
680,528 - MPMX19_05177 0.16 +0.1
680,528 - MPMX19_05177 0.16 +0.6
681,010 + MPMX19_05177 0.66 -1.4
681,010 + MPMX19_05177 0.66 -1.2
681,010 + MPMX19_05177 0.66 -1.0
681,011 - MPMX19_05177 0.66 +0.9
681,085 + MPMX19_05177 0.74 +0.6
681,085 + MPMX19_05177 0.74 -2.3
681,085 + MPMX19_05177 0.74 +0.9
681,131 + MPMX19_05177 0.79 -0.9
681,344 + -0.2
681,345 - +1.2
681,698 + MPMX19_05178 0.32 -0.9
681,698 + MPMX19_05178 0.32 +1.9
681,698 + MPMX19_05178 0.32 -0.6
681,699 - MPMX19_05178 0.32 -1.4
681,699 - MPMX19_05178 0.32 +0.3
681,699 - MPMX19_05178 0.32 +0.6
681,860 + MPMX19_05178 0.46 -2.1
681,860 + MPMX19_05178 0.46 -0.5
681,860 + MPMX19_05178 0.46 +1.0
681,861 - MPMX19_05178 0.46 +1.2
681,861 - MPMX19_05178 0.46 +0.1
681,861 - MPMX19_05178 0.46 -1.6
681,942 - MPMX19_05178 0.53 -0.6
681,942 - MPMX19_05178 0.53 -1.7
681,942 - MPMX19_05178 0.53 +0.9
681,942 - MPMX19_05178 0.53 +1.0
681,942 - MPMX19_05178 0.53 +1.1
682,058 + MPMX19_05178 0.64 +0.5
682,059 - MPMX19_05178 0.64 +0.4
682,518 - -0.7
682,518 - -1.1
682,799 + MPMX19_05179 0.28 -0.2
682,857 - MPMX19_05179 0.34 +0.4
682,857 - MPMX19_05179 0.34 +0.1
682,857 - MPMX19_05179 0.34 -1.2
682,857 - MPMX19_05179 0.34 -0.5
682,862 + MPMX19_05179 0.34 +0.1
682,862 + MPMX19_05179 0.34 -0.4
682,862 + MPMX19_05179 0.34 +1.3
682,862 + MPMX19_05179 0.34 -0.6
682,862 + MPMX19_05179 0.34 -1.1
682,862 + MPMX19_05179 0.34 -0.8
682,862 + MPMX19_05179 0.34 -1.2
682,863 - MPMX19_05179 0.34 -0.4
682,863 - MPMX19_05179 0.34 +0.0
682,863 - MPMX19_05179 0.34 +0.1
682,863 - MPMX19_05179 0.34 +0.2
682,863 - MPMX19_05179 0.34 +0.6
682,863 - MPMX19_05179 0.34 +0.3
682,863 - MPMX19_05179 0.34 -0.4
682,863 - MPMX19_05179 0.34 -1.9
682,863 - MPMX19_05179 0.34 -0.2
682,863 - MPMX19_05179 0.34 -2.3
682,863 - MPMX19_05179 0.34 +0.4
682,863 - MPMX19_05179 0.34 +0.3
682,863 - MPMX19_05179 0.34 -0.4
682,863 - MPMX19_05179 0.34 +1.0
682,863 - MPMX19_05179 0.34 +0.1
682,863 - MPMX19_05179 0.34 +0.2
682,863 - MPMX19_05179 0.34 -0.7
682,863 - MPMX19_05179 0.34 +0.2
682,877 + MPMX19_05179 0.36 -0.7
682,935 - MPMX19_05179 0.41 -1.2
682,935 - MPMX19_05179 0.41 +0.6
682,941 - MPMX19_05179 0.42 -0.7
682,941 - MPMX19_05179 0.42 -0.4
682,941 - MPMX19_05179 0.42 -0.4
682,941 - MPMX19_05179 0.42 -0.2
682,941 - MPMX19_05179 0.42 +0.9
682,941 - MPMX19_05179 0.42 -1.3
682,941 - MPMX19_05179 0.42 -0.4
682,941 - MPMX19_05179 0.42 -1.0
683,061 - MPMX19_05179 0.54 -0.3
683,061 - MPMX19_05179 0.54 -0.7
683,061 - MPMX19_05179 0.54 -0.5
683,061 - MPMX19_05179 0.54 +0.5
683,061 - MPMX19_05179 0.54 -0.1
683,061 - MPMX19_05179 0.54 +0.2
683,061 - MPMX19_05179 0.54 -1.5
683,061 - MPMX19_05179 0.54 -0.5
683,061 - MPMX19_05179 0.54 -1.4
683,061 - MPMX19_05179 0.54 -0.8
683,061 - MPMX19_05179 0.54 -0.7
683,061 - MPMX19_05179 0.54 -0.9
683,064 - MPMX19_05179 0.54 +0.9
683,064 - MPMX19_05179 0.54 +0.5
683,064 - MPMX19_05179 0.54 +0.4
683,064 - MPMX19_05179 0.54 -0.2
683,064 - MPMX19_05179 0.54 -0.4
683,064 - MPMX19_05179 0.54 +1.1
683,064 - MPMX19_05179 0.54 +1.1
683,064 - MPMX19_05179 0.54 -0.7
683,064 - MPMX19_05179 0.54 -0.9
683,064 - MPMX19_05179 0.54 +0.6
683,064 - MPMX19_05179 0.54 +0.6
683,087 + MPMX19_05179 0.56 -0.7
683,087 + MPMX19_05179 0.56 -1.2
683,087 + MPMX19_05179 0.56 -1.2
683,087 + MPMX19_05179 0.56 -0.5
683,087 + MPMX19_05179 0.56 -0.9
683,087 + MPMX19_05179 0.56 -0.5
683,087 + MPMX19_05179 0.56 +1.6
683,087 + MPMX19_05179 0.56 +0.3
683,375 + MPMX19_05179 0.85 +0.4
683,375 + MPMX19_05179 0.85 +0.7
683,375 + MPMX19_05179 0.85 -1.7
683,375 + MPMX19_05179 0.85 -0.2
683,375 + MPMX19_05179 0.85 +1.4
683,375 + MPMX19_05179 0.85 -0.9

Or see this region's nucleotide sequence