Experiment: NF
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_05138 and MPMX19_05139 are separated by 6 nucleotides
MPMX19_05138: MPMX19_05138 - CRISPR-associated endonuclease Cas1, at 627,756 to 628,796
_05138
MPMX19_05139: MPMX19_05139 - CRISPR-associated endoribonuclease Cas2, at 628,803 to 629,093
_05139
Position (kb) 628
629
630 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 628.238 kb on + strand, within MPMX19_05138 at 628.239 kb on - strand, within MPMX19_05138 at 628.239 kb on - strand, within MPMX19_05138 at 628.282 kb on - strand, within MPMX19_05138 at 628.390 kb on + strand, within MPMX19_05138 at 628.391 kb on - strand, within MPMX19_05138 at 628.391 kb on - strand, within MPMX19_05138 at 628.392 kb on + strand, within MPMX19_05138 at 628.392 kb on + strand, within MPMX19_05138 at 628.392 kb on + strand, within MPMX19_05138 at 628.392 kb on + strand, within MPMX19_05138 at 628.392 kb on + strand, within MPMX19_05138 at 628.392 kb on + strand, within MPMX19_05138 at 628.392 kb on + strand, within MPMX19_05138 at 628.392 kb on + strand, within MPMX19_05138 at 628.392 kb on + strand, within MPMX19_05138 at 628.392 kb on + strand, within MPMX19_05138 at 628.392 kb on + strand, within MPMX19_05138 at 628.392 kb on + strand, within MPMX19_05138 at 628.393 kb on - strand, within MPMX19_05138 at 628.393 kb on - strand, within MPMX19_05138 at 628.393 kb on - strand, within MPMX19_05138 at 628.393 kb on - strand, within MPMX19_05138 at 628.397 kb on + strand, within MPMX19_05138 at 628.397 kb on + strand, within MPMX19_05138 at 628.397 kb on + strand, within MPMX19_05138 at 628.397 kb on + strand, within MPMX19_05138 at 628.397 kb on + strand, within MPMX19_05138 at 628.397 kb on + strand, within MPMX19_05138 at 628.397 kb on + strand, within MPMX19_05138 at 628.397 kb on + strand, within MPMX19_05138 at 628.397 kb on + strand, within MPMX19_05138 at 628.398 kb on - strand, within MPMX19_05138 at 628.398 kb on - strand, within MPMX19_05138 at 628.398 kb on - strand, within MPMX19_05138 at 628.398 kb on - strand, within MPMX19_05138 at 628.398 kb on - strand, within MPMX19_05138 at 628.398 kb on - strand, within MPMX19_05138 at 628.398 kb on - strand, within MPMX19_05138 at 628.398 kb on - strand, within MPMX19_05138 at 628.586 kb on + strand, within MPMX19_05138 at 628.586 kb on + strand, within MPMX19_05138 at 628.587 kb on - strand, within MPMX19_05138 at 628.587 kb on - strand, within MPMX19_05138 at 628.651 kb on - strand, within MPMX19_05138 at 628.786 kb on + strand at 628.786 kb on + strand at 628.786 kb on + strand at 628.787 kb on - strand at 628.787 kb on - strand at 628.787 kb on - strand at 628.821 kb on + strand at 628.821 kb on + strand at 628.821 kb on + strand at 628.821 kb on + strand at 628.821 kb on + strand at 628.821 kb on + strand at 628.821 kb on + strand at 628.822 kb on - strand at 628.822 kb on - strand at 628.822 kb on - strand at 628.822 kb on - strand at 628.822 kb on - strand at 628.822 kb on - strand at 628.828 kb on + strand at 628.828 kb on + strand at 628.828 kb on + strand at 628.828 kb on + strand at 628.828 kb on + strand at 628.828 kb on + strand at 628.828 kb on + strand at 628.828 kb on + strand at 628.828 kb on + strand at 628.828 kb on + strand at 628.829 kb on - strand at 628.829 kb on - strand at 628.829 kb on - strand at 628.829 kb on - strand at 628.829 kb on - strand at 629.007 kb on + strand, within MPMX19_05139 at 629.007 kb on + strand, within MPMX19_05139 at 629.007 kb on + strand, within MPMX19_05139 at 629.007 kb on + strand, within MPMX19_05139 at 629.007 kb on + strand, within MPMX19_05139 at 629.007 kb on + strand, within MPMX19_05139 at 629.008 kb on - strand, within MPMX19_05139 at 629.008 kb on - strand, within MPMX19_05139 at 629.008 kb on - strand, within MPMX19_05139 at 629.008 kb on - strand, within MPMX19_05139 at 629.008 kb on - strand, within MPMX19_05139 at 629.071 kb on + strand at 629.071 kb on + strand at 629.072 kb on - strand at 629.072 kb on - strand at 629.254 kb on + strand at 629.507 kb on + strand at 629.507 kb on + strand at 629.507 kb on + strand at 629.507 kb on + strand at 629.507 kb on + strand at 629.507 kb on + strand at 629.508 kb on - strand at 629.508 kb on - strand at 629.508 kb on - strand at 629.508 kb on - strand at 629.509 kb on + strand at 629.509 kb on + strand at 629.509 kb on + strand at 629.509 kb on + strand at 629.509 kb on + strand at 629.509 kb on + strand at 629.510 kb on - strand at 629.510 kb on - strand at 629.510 kb on - strand at 629.591 kb on + strand at 629.592 kb on - strand at 629.592 kb on - strand at 629.592 kb on - strand at 629.592 kb on - strand at 629.650 kb on + strand at 629.650 kb on + strand at 629.650 kb on + strand at 629.650 kb on + strand at 629.650 kb on + strand at 629.650 kb on + strand at 629.650 kb on + strand at 629.650 kb on + strand at 629.650 kb on + strand at 629.650 kb on + strand at 629.650 kb on + strand at 629.650 kb on + strand at 629.651 kb on - strand at 629.651 kb on - strand at 629.651 kb on - strand at 629.651 kb on - strand at 629.651 kb on - strand at 629.651 kb on - strand at 629.968 kb on + strand at 629.968 kb on + strand at 629.968 kb on + strand at 629.968 kb on + strand at 629.968 kb on + strand at 629.969 kb on - strand at 629.969 kb on - strand at 629.969 kb on - strand at 629.969 kb on - strand at 629.969 kb on - strand at 629.969 kb on - strand at 629.969 kb on - strand at 629.969 kb on - strand at 629.969 kb on - strand at 629.969 kb on - strand at 630.041 kb on + strand at 630.041 kb on + strand at 630.042 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NF remove 628,238 + MPMX19_05138 0.46 -0.7 628,239 - MPMX19_05138 0.46 +0.5 628,239 - MPMX19_05138 0.46 +1.3 628,282 - MPMX19_05138 0.51 -0.1 628,390 + MPMX19_05138 0.61 -1.0 628,391 - MPMX19_05138 0.61 +1.0 628,391 - MPMX19_05138 0.61 -0.2 628,392 + MPMX19_05138 0.61 -1.0 628,392 + MPMX19_05138 0.61 +1.1 628,392 + MPMX19_05138 0.61 -1.1 628,392 + MPMX19_05138 0.61 -0.9 628,392 + MPMX19_05138 0.61 -0.5 628,392 + MPMX19_05138 0.61 +0.2 628,392 + MPMX19_05138 0.61 -2.4 628,392 + MPMX19_05138 0.61 -0.4 628,392 + MPMX19_05138 0.61 -0.7 628,392 + MPMX19_05138 0.61 +1.2 628,392 + MPMX19_05138 0.61 +0.4 628,392 + MPMX19_05138 0.61 -1.4 628,393 - MPMX19_05138 0.61 -0.7 628,393 - MPMX19_05138 0.61 +0.7 628,393 - MPMX19_05138 0.61 +1.0 628,393 - MPMX19_05138 0.61 -0.7 628,397 + MPMX19_05138 0.62 -1.4 628,397 + MPMX19_05138 0.62 -3.2 628,397 + MPMX19_05138 0.62 -1.9 628,397 + MPMX19_05138 0.62 -0.8 628,397 + MPMX19_05138 0.62 +0.9 628,397 + MPMX19_05138 0.62 -0.6 628,397 + MPMX19_05138 0.62 -1.1 628,397 + MPMX19_05138 0.62 -1.6 628,397 + MPMX19_05138 0.62 -0.4 628,398 - MPMX19_05138 0.62 -0.2 628,398 - MPMX19_05138 0.62 -0.1 628,398 - MPMX19_05138 0.62 +0.6 628,398 - MPMX19_05138 0.62 -0.9 628,398 - MPMX19_05138 0.62 -0.2 628,398 - MPMX19_05138 0.62 -0.8 628,398 - MPMX19_05138 0.62 -0.7 628,398 - MPMX19_05138 0.62 +0.8 628,586 + MPMX19_05138 0.80 +0.6 628,586 + MPMX19_05138 0.80 +0.6 628,587 - MPMX19_05138 0.80 -0.1 628,587 - MPMX19_05138 0.80 -0.4 628,651 - MPMX19_05138 0.86 -0.8 628,786 + +0.1 628,786 + -1.7 628,786 + -2.3 628,787 - +0.3 628,787 - +0.9 628,787 - -2.2 628,821 + -1.5 628,821 + -0.4 628,821 + -0.7 628,821 + -1.7 628,821 + -1.4 628,821 + -0.9 628,821 + -1.0 628,822 - -1.1 628,822 - -0.7 628,822 - +0.1 628,822 - -1.5 628,822 - -1.7 628,822 - +0.1 628,828 + -0.5 628,828 + -1.6 628,828 + -0.5 628,828 + -0.9 628,828 + -0.4 628,828 + -1.6 628,828 + +0.8 628,828 + -2.1 628,828 + -0.4 628,828 + -0.0 628,829 - -0.2 628,829 - +0.1 628,829 - -0.2 628,829 - -0.5 628,829 - -1.1 629,007 + MPMX19_05139 0.70 +0.5 629,007 + MPMX19_05139 0.70 -1.8 629,007 + MPMX19_05139 0.70 -0.7 629,007 + MPMX19_05139 0.70 -0.7 629,007 + MPMX19_05139 0.70 -0.7 629,007 + MPMX19_05139 0.70 -0.4 629,008 - MPMX19_05139 0.70 -0.7 629,008 - MPMX19_05139 0.70 -1.9 629,008 - MPMX19_05139 0.70 -1.4 629,008 - MPMX19_05139 0.70 -0.5 629,008 - MPMX19_05139 0.70 -1.3 629,071 + -0.5 629,071 + +0.1 629,072 - -2.3 629,072 - -1.5 629,254 + -0.5 629,507 + +0.4 629,507 + -1.4 629,507 + +0.4 629,507 + -1.1 629,507 + +0.1 629,507 + -0.8 629,508 - -0.5 629,508 - -1.1 629,508 - -0.3 629,508 - +1.1 629,509 + -1.3 629,509 + +0.2 629,509 + -0.1 629,509 + -0.4 629,509 + +0.3 629,509 + -0.8 629,510 - -0.6 629,510 - -0.5 629,510 - -0.8 629,591 + -0.6 629,592 - -0.1 629,592 - +1.2 629,592 - -0.4 629,592 - -1.7 629,650 + -0.2 629,650 + -0.1 629,650 + +0.5 629,650 + +0.1 629,650 + -0.8 629,650 + -2.2 629,650 + +0.3 629,650 + -0.8 629,650 + +0.8 629,650 + -1.2 629,650 + -0.1 629,650 + +0.1 629,651 - -1.5 629,651 - -2.3 629,651 - -0.0 629,651 - -0.8 629,651 - -0.1 629,651 - -2.1 629,968 + -0.7 629,968 + -1.2 629,968 + +0.1 629,968 + -0.9 629,968 + +0.5 629,969 - -0.4 629,969 - -0.2 629,969 - -0.7 629,969 - +0.3 629,969 - -0.9 629,969 - -1.9 629,969 - -0.7 629,969 - +0.1 629,969 - -0.9 629,969 - +0.6 630,041 + +0.4 630,041 + -0.4 630,042 - -0.7
Or see this region's nucleotide sequence