Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_05089

Experiment: NF

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_05088 and MPMX19_05089 are separated by 0 nucleotidesMPMX19_05089 and MPMX19_05090 overlap by 4 nucleotides MPMX19_05088: MPMX19_05088 - Enterobactin exporter EntS, at 577,134 to 578,369 _05088 MPMX19_05089: MPMX19_05089 - Acetyl-CoA acetyltransferase, at 578,370 to 579,539 _05089 MPMX19_05090: MPMX19_05090 - putative acyl--CoA ligase YhfT, at 579,536 to 581,035 _05090 Position (kb) 578 579 580Strain fitness (log2 ratio) -3 -2 -1 0 1at 577.458 kb on + strand, within MPMX19_05088at 577.458 kb on + strand, within MPMX19_05088at 577.458 kb on + strand, within MPMX19_05088at 577.459 kb on - strand, within MPMX19_05088at 577.459 kb on - strand, within MPMX19_05088at 577.459 kb on - strand, within MPMX19_05088at 577.459 kb on - strand, within MPMX19_05088at 577.459 kb on - strand, within MPMX19_05088at 577.459 kb on - strand, within MPMX19_05088at 577.459 kb on - strand, within MPMX19_05088at 577.624 kb on + strand, within MPMX19_05088at 577.624 kb on + strand, within MPMX19_05088at 577.624 kb on + strand, within MPMX19_05088at 577.624 kb on + strand, within MPMX19_05088at 577.624 kb on + strand, within MPMX19_05088at 577.624 kb on + strand, within MPMX19_05088at 577.624 kb on + strand, within MPMX19_05088at 577.625 kb on - strand, within MPMX19_05088at 577.625 kb on - strand, within MPMX19_05088at 577.625 kb on - strand, within MPMX19_05088at 577.625 kb on - strand, within MPMX19_05088at 577.834 kb on + strand, within MPMX19_05088at 577.834 kb on + strand, within MPMX19_05088at 577.834 kb on + strand, within MPMX19_05088at 577.834 kb on + strand, within MPMX19_05088at 577.835 kb on - strand, within MPMX19_05088at 577.835 kb on - strand, within MPMX19_05088at 577.835 kb on - strand, within MPMX19_05088at 577.835 kb on - strand, within MPMX19_05088at 577.835 kb on - strand, within MPMX19_05088at 577.858 kb on + strand, within MPMX19_05088at 577.858 kb on + strand, within MPMX19_05088at 577.858 kb on + strand, within MPMX19_05088at 577.858 kb on + strand, within MPMX19_05088at 577.858 kb on + strand, within MPMX19_05088at 577.858 kb on + strand, within MPMX19_05088at 577.858 kb on + strand, within MPMX19_05088at 577.858 kb on + strand, within MPMX19_05088at 577.858 kb on + strand, within MPMX19_05088at 577.858 kb on + strand, within MPMX19_05088at 577.858 kb on + strand, within MPMX19_05088at 577.858 kb on + strand, within MPMX19_05088at 577.859 kb on - strand, within MPMX19_05088at 577.859 kb on - strand, within MPMX19_05088at 577.859 kb on - strand, within MPMX19_05088at 577.859 kb on - strand, within MPMX19_05088at 577.859 kb on - strand, within MPMX19_05088at 577.859 kb on - strand, within MPMX19_05088at 577.859 kb on - strand, within MPMX19_05088at 577.859 kb on - strand, within MPMX19_05088at 577.859 kb on - strand, within MPMX19_05088at 577.859 kb on - strand, within MPMX19_05088at 577.859 kb on - strand, within MPMX19_05088at 577.859 kb on - strand, within MPMX19_05088at 577.859 kb on - strand, within MPMX19_05088at 578.233 kb on + strand, within MPMX19_05088at 578.233 kb on + strand, within MPMX19_05088at 578.233 kb on + strand, within MPMX19_05088at 578.233 kb on + strand, within MPMX19_05088at 578.233 kb on + strand, within MPMX19_05088at 578.233 kb on + strand, within MPMX19_05088at 578.233 kb on + strand, within MPMX19_05088at 578.233 kb on + strand, within MPMX19_05088at 578.233 kb on + strand, within MPMX19_05088at 578.234 kb on - strand, within MPMX19_05088at 578.234 kb on - strand, within MPMX19_05088at 578.234 kb on - strand, within MPMX19_05088at 578.234 kb on - strand, within MPMX19_05088at 578.234 kb on - strand, within MPMX19_05088at 578.234 kb on - strand, within MPMX19_05088at 578.234 kb on - strand, within MPMX19_05088at 578.234 kb on - strand, within MPMX19_05088at 578.234 kb on - strand, within MPMX19_05088at 578.234 kb on - strand, within MPMX19_05088at 578.234 kb on - strand, within MPMX19_05088at 578.234 kb on - strand, within MPMX19_05088at 578.234 kb on - strand, within MPMX19_05088at 578.234 kb on - strand, within MPMX19_05088at 578.234 kb on - strand, within MPMX19_05088at 578.234 kb on - strand, within MPMX19_05088at 578.234 kb on - strand, within MPMX19_05088at 578.342 kb on + strandat 578.342 kb on + strandat 578.512 kb on + strand, within MPMX19_05089at 578.897 kb on + strand, within MPMX19_05089at 578.897 kb on + strand, within MPMX19_05089at 579.038 kb on + strand, within MPMX19_05089at 579.052 kb on + strand, within MPMX19_05089at 579.052 kb on + strand, within MPMX19_05089at 579.052 kb on + strand, within MPMX19_05089at 579.052 kb on + strand, within MPMX19_05089at 579.052 kb on + strand, within MPMX19_05089at 579.053 kb on - strand, within MPMX19_05089at 579.053 kb on - strand, within MPMX19_05089at 579.053 kb on - strand, within MPMX19_05089at 579.053 kb on - strand, within MPMX19_05089at 579.130 kb on + strand, within MPMX19_05089at 579.130 kb on + strand, within MPMX19_05089at 579.131 kb on - strand, within MPMX19_05089at 579.666 kb on + strandat 579.666 kb on + strandat 579.666 kb on + strandat 579.666 kb on + strandat 579.666 kb on + strandat 579.666 kb on + strandat 579.667 kb on - strandat 579.667 kb on - strandat 579.667 kb on - strandat 579.667 kb on - strandat 579.667 kb on - strandat 579.667 kb on - strandat 579.667 kb on - strandat 579.667 kb on - strandat 579.667 kb on - strandat 579.667 kb on - strandat 579.667 kb on - strandat 579.667 kb on - strandat 579.667 kb on - strandat 579.667 kb on - strandat 579.765 kb on + strand, within MPMX19_05090at 579.766 kb on - strand, within MPMX19_05090at 579.766 kb on - strand, within MPMX19_05090at 579.871 kb on + strand, within MPMX19_05090at 579.871 kb on + strand, within MPMX19_05090at 579.871 kb on + strand, within MPMX19_05090at 579.872 kb on - strand, within MPMX19_05090at 579.872 kb on - strand, within MPMX19_05090at 579.925 kb on - strand, within MPMX19_05090at 579.987 kb on + strand, within MPMX19_05090at 579.987 kb on + strand, within MPMX19_05090at 579.987 kb on + strand, within MPMX19_05090at 579.987 kb on + strand, within MPMX19_05090at 579.988 kb on - strand, within MPMX19_05090at 580.167 kb on + strand, within MPMX19_05090at 580.167 kb on + strand, within MPMX19_05090at 580.167 kb on + strand, within MPMX19_05090at 580.167 kb on + strand, within MPMX19_05090at 580.168 kb on - strand, within MPMX19_05090at 580.168 kb on - strand, within MPMX19_05090at 580.168 kb on - strand, within MPMX19_05090at 580.168 kb on - strand, within MPMX19_05090at 580.168 kb on - strand, within MPMX19_05090at 580.170 kb on + strand, within MPMX19_05090at 580.170 kb on + strand, within MPMX19_05090at 580.171 kb on - strand, within MPMX19_05090at 580.171 kb on - strand, within MPMX19_05090at 580.171 kb on - strand, within MPMX19_05090at 580.322 kb on + strand, within MPMX19_05090at 580.437 kb on + strand, within MPMX19_05090at 580.438 kb on - strand, within MPMX19_05090at 580.438 kb on - strand, within MPMX19_05090at 580.438 kb on - strand, within MPMX19_05090at 580.438 kb on - strand, within MPMX19_05090

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Per-strain Table

Position Strand Gene LocusTag Fraction NF
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577,458 + MPMX19_05088 0.26 -1.0
577,458 + MPMX19_05088 0.26 -1.3
577,458 + MPMX19_05088 0.26 -0.9
577,459 - MPMX19_05088 0.26 -0.5
577,459 - MPMX19_05088 0.26 +0.7
577,459 - MPMX19_05088 0.26 -1.8
577,459 - MPMX19_05088 0.26 +1.1
577,459 - MPMX19_05088 0.26 -0.8
577,459 - MPMX19_05088 0.26 -1.2
577,459 - MPMX19_05088 0.26 +0.7
577,624 + MPMX19_05088 0.40 -0.3
577,624 + MPMX19_05088 0.40 -0.1
577,624 + MPMX19_05088 0.40 -0.8
577,624 + MPMX19_05088 0.40 -1.9
577,624 + MPMX19_05088 0.40 +0.1
577,624 + MPMX19_05088 0.40 -0.5
577,624 + MPMX19_05088 0.40 +0.7
577,625 - MPMX19_05088 0.40 +0.2
577,625 - MPMX19_05088 0.40 -1.0
577,625 - MPMX19_05088 0.40 +0.6
577,625 - MPMX19_05088 0.40 -0.9
577,834 + MPMX19_05088 0.57 +0.1
577,834 + MPMX19_05088 0.57 -1.0
577,834 + MPMX19_05088 0.57 -0.4
577,834 + MPMX19_05088 0.57 -0.7
577,835 - MPMX19_05088 0.57 -0.7
577,835 - MPMX19_05088 0.57 -1.3
577,835 - MPMX19_05088 0.57 +0.7
577,835 - MPMX19_05088 0.57 +0.3
577,835 - MPMX19_05088 0.57 -0.3
577,858 + MPMX19_05088 0.59 +0.1
577,858 + MPMX19_05088 0.59 -0.3
577,858 + MPMX19_05088 0.59 +0.0
577,858 + MPMX19_05088 0.59 -0.7
577,858 + MPMX19_05088 0.59 +0.2
577,858 + MPMX19_05088 0.59 +0.9
577,858 + MPMX19_05088 0.59 -0.1
577,858 + MPMX19_05088 0.59 +1.0
577,858 + MPMX19_05088 0.59 -1.2
577,858 + MPMX19_05088 0.59 -1.2
577,858 + MPMX19_05088 0.59 -0.8
577,858 + MPMX19_05088 0.59 +1.2
577,859 - MPMX19_05088 0.59 -1.6
577,859 - MPMX19_05088 0.59 -0.0
577,859 - MPMX19_05088 0.59 +0.5
577,859 - MPMX19_05088 0.59 +0.7
577,859 - MPMX19_05088 0.59 -1.8
577,859 - MPMX19_05088 0.59 +0.7
577,859 - MPMX19_05088 0.59 -0.5
577,859 - MPMX19_05088 0.59 -0.4
577,859 - MPMX19_05088 0.59 -0.1
577,859 - MPMX19_05088 0.59 -2.4
577,859 - MPMX19_05088 0.59 +1.1
577,859 - MPMX19_05088 0.59 +1.1
577,859 - MPMX19_05088 0.59 -0.5
578,233 + MPMX19_05088 0.89 +0.2
578,233 + MPMX19_05088 0.89 -0.2
578,233 + MPMX19_05088 0.89 -2.0
578,233 + MPMX19_05088 0.89 -0.2
578,233 + MPMX19_05088 0.89 -0.9
578,233 + MPMX19_05088 0.89 -2.3
578,233 + MPMX19_05088 0.89 -0.9
578,233 + MPMX19_05088 0.89 -1.3
578,233 + MPMX19_05088 0.89 -0.3
578,234 - MPMX19_05088 0.89 -1.6
578,234 - MPMX19_05088 0.89 -0.4
578,234 - MPMX19_05088 0.89 -0.4
578,234 - MPMX19_05088 0.89 -1.7
578,234 - MPMX19_05088 0.89 -0.5
578,234 - MPMX19_05088 0.89 -0.6
578,234 - MPMX19_05088 0.89 -0.9
578,234 - MPMX19_05088 0.89 +0.2
578,234 - MPMX19_05088 0.89 +0.7
578,234 - MPMX19_05088 0.89 -0.1
578,234 - MPMX19_05088 0.89 +0.2
578,234 - MPMX19_05088 0.89 -0.7
578,234 - MPMX19_05088 0.89 +0.8
578,234 - MPMX19_05088 0.89 -0.1
578,234 - MPMX19_05088 0.89 +0.5
578,234 - MPMX19_05088 0.89 +0.1
578,234 - MPMX19_05088 0.89 +0.4
578,342 + -0.8
578,342 + -0.0
578,512 + MPMX19_05089 0.12 -0.2
578,897 + MPMX19_05089 0.45 +0.8
578,897 + MPMX19_05089 0.45 +0.7
579,038 + MPMX19_05089 0.57 +0.1
579,052 + MPMX19_05089 0.58 +0.8
579,052 + MPMX19_05089 0.58 -0.1
579,052 + MPMX19_05089 0.58 -0.7
579,052 + MPMX19_05089 0.58 -0.8
579,052 + MPMX19_05089 0.58 +1.1
579,053 - MPMX19_05089 0.58 +0.7
579,053 - MPMX19_05089 0.58 -1.5
579,053 - MPMX19_05089 0.58 +0.8
579,053 - MPMX19_05089 0.58 -0.2
579,130 + MPMX19_05089 0.65 +0.7
579,130 + MPMX19_05089 0.65 -0.7
579,131 - MPMX19_05089 0.65 +0.9
579,666 + +1.2
579,666 + -0.1
579,666 + +0.5
579,666 + -0.3
579,666 + -0.7
579,666 + -1.3
579,667 - -0.5
579,667 - -0.2
579,667 - +0.1
579,667 - -1.2
579,667 - -1.4
579,667 - +0.5
579,667 - +0.2
579,667 - -0.4
579,667 - -0.5
579,667 - -3.1
579,667 - -0.5
579,667 - -1.0
579,667 - -0.2
579,667 - -0.8
579,765 + MPMX19_05090 0.15 -1.7
579,766 - MPMX19_05090 0.15 -1.2
579,766 - MPMX19_05090 0.15 -1.3
579,871 + MPMX19_05090 0.22 -0.8
579,871 + MPMX19_05090 0.22 +0.9
579,871 + MPMX19_05090 0.22 +0.2
579,872 - MPMX19_05090 0.22 +0.3
579,872 - MPMX19_05090 0.22 -0.7
579,925 - MPMX19_05090 0.26 -0.2
579,987 + MPMX19_05090 0.30 -0.5
579,987 + MPMX19_05090 0.30 -0.8
579,987 + MPMX19_05090 0.30 +1.1
579,987 + MPMX19_05090 0.30 -0.4
579,988 - MPMX19_05090 0.30 +1.4
580,167 + MPMX19_05090 0.42 -1.0
580,167 + MPMX19_05090 0.42 +0.7
580,167 + MPMX19_05090 0.42 +0.3
580,167 + MPMX19_05090 0.42 -0.9
580,168 - MPMX19_05090 0.42 +0.1
580,168 - MPMX19_05090 0.42 -0.3
580,168 - MPMX19_05090 0.42 -0.4
580,168 - MPMX19_05090 0.42 -1.0
580,168 - MPMX19_05090 0.42 -1.0
580,170 + MPMX19_05090 0.42 -0.5
580,170 + MPMX19_05090 0.42 +0.4
580,171 - MPMX19_05090 0.42 +0.7
580,171 - MPMX19_05090 0.42 -0.0
580,171 - MPMX19_05090 0.42 -1.0
580,322 + MPMX19_05090 0.52 -0.6
580,437 + MPMX19_05090 0.60 +1.7
580,438 - MPMX19_05090 0.60 -0.3
580,438 - MPMX19_05090 0.60 -2.0
580,438 - MPMX19_05090 0.60 -0.7
580,438 - MPMX19_05090 0.60 -0.8

Or see this region's nucleotide sequence