Experiment: NF
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_05046 and MPMX19_05047 are separated by 127 nucleotides MPMX19_05047 and MPMX19_05048 are separated by 63 nucleotides MPMX19_05048 and MPMX19_05049 overlap by 14 nucleotides MPMX19_05049 and MPMX19_05050 are separated by 5 nucleotides
MPMX19_05046: MPMX19_05046 - Acetolactate synthase isozyme 2 large subunit, at 530,678 to 532,336
_05046
MPMX19_05047: MPMX19_05047 - Glycine cleavage system transcriptional activator, at 532,464 to 533,360
_05047
MPMX19_05048: MPMX19_05048 - hypothetical protein, at 533,424 to 533,720
_05048
MPMX19_05049: MPMX19_05049 - hypothetical protein, at 533,707 to 534,069
_05049
MPMX19_05050: MPMX19_05050 - Inner membrane ABC transporter ATP-binding protein YddA, at 534,075 to 535,871
_05050
Position (kb)
532
533
534 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 531.492 kb on + strand, within MPMX19_05046 at 531.492 kb on + strand, within MPMX19_05046 at 531.492 kb on + strand, within MPMX19_05046 at 531.492 kb on + strand, within MPMX19_05046 at 531.492 kb on + strand, within MPMX19_05046 at 531.492 kb on - strand, within MPMX19_05046 at 531.493 kb on - strand, within MPMX19_05046 at 531.493 kb on - strand, within MPMX19_05046 at 531.493 kb on - strand, within MPMX19_05046 at 531.493 kb on - strand, within MPMX19_05046 at 531.493 kb on - strand, within MPMX19_05046 at 531.493 kb on - strand, within MPMX19_05046 at 531.493 kb on - strand, within MPMX19_05046 at 531.603 kb on + strand, within MPMX19_05046 at 531.604 kb on - strand, within MPMX19_05046 at 531.604 kb on - strand, within MPMX19_05046 at 531.993 kb on + strand, within MPMX19_05046 at 532.254 kb on + strand at 532.254 kb on + strand at 532.254 kb on + strand at 532.254 kb on + strand at 532.254 kb on + strand at 532.254 kb on + strand at 532.254 kb on + strand at 532.255 kb on - strand at 532.255 kb on - strand at 532.255 kb on - strand at 532.255 kb on - strand at 532.255 kb on - strand at 532.255 kb on - strand at 532.255 kb on - strand at 532.360 kb on - strand at 532.360 kb on - strand at 532.434 kb on + strand at 532.434 kb on + strand at 532.435 kb on - strand at 532.677 kb on + strand, within MPMX19_05047 at 532.677 kb on + strand, within MPMX19_05047 at 532.677 kb on + strand, within MPMX19_05047 at 532.677 kb on + strand, within MPMX19_05047 at 532.677 kb on + strand, within MPMX19_05047 at 532.677 kb on + strand, within MPMX19_05047 at 532.678 kb on - strand, within MPMX19_05047 at 532.678 kb on - strand, within MPMX19_05047 at 533.268 kb on + strand, within MPMX19_05047 at 533.268 kb on + strand, within MPMX19_05047 at 533.268 kb on + strand, within MPMX19_05047 at 533.268 kb on + strand, within MPMX19_05047 at 533.268 kb on + strand, within MPMX19_05047 at 533.268 kb on + strand, within MPMX19_05047 at 533.268 kb on + strand, within MPMX19_05047 at 533.268 kb on + strand, within MPMX19_05047 at 533.268 kb on + strand, within MPMX19_05047 at 533.269 kb on - strand, within MPMX19_05047 at 533.269 kb on - strand, within MPMX19_05047 at 533.269 kb on - strand, within MPMX19_05047 at 533.269 kb on - strand, within MPMX19_05047 at 533.269 kb on - strand, within MPMX19_05047 at 533.269 kb on - strand, within MPMX19_05047 at 533.269 kb on - strand, within MPMX19_05047 at 533.269 kb on - strand, within MPMX19_05047 at 533.269 kb on - strand, within MPMX19_05047 at 533.269 kb on - strand, within MPMX19_05047 at 533.269 kb on - strand, within MPMX19_05047 at 533.271 kb on + strand at 533.271 kb on + strand at 533.271 kb on + strand at 533.271 kb on + strand at 533.271 kb on + strand at 533.271 kb on + strand at 533.272 kb on - strand at 533.272 kb on - strand at 533.272 kb on - strand at 533.272 kb on - strand at 533.272 kb on - strand at 533.272 kb on - strand at 533.272 kb on - strand at 533.412 kb on + strand at 533.412 kb on + strand at 533.412 kb on + strand at 533.413 kb on - strand at 533.413 kb on - strand at 533.413 kb on - strand at 533.413 kb on - strand at 533.413 kb on - strand at 533.413 kb on - strand at 533.538 kb on + strand, within MPMX19_05048 at 533.539 kb on - strand, within MPMX19_05048 at 533.550 kb on + strand, within MPMX19_05048 at 533.550 kb on + strand, within MPMX19_05048 at 533.550 kb on + strand, within MPMX19_05048 at 533.550 kb on + strand, within MPMX19_05048 at 533.550 kb on + strand, within MPMX19_05048 at 533.551 kb on - strand, within MPMX19_05048 at 533.551 kb on - strand, within MPMX19_05048 at 533.551 kb on - strand, within MPMX19_05048 at 533.551 kb on - strand, within MPMX19_05048 at 533.551 kb on - strand, within MPMX19_05048 at 533.551 kb on - strand, within MPMX19_05048 at 533.551 kb on - strand, within MPMX19_05048 at 533.552 kb on + strand, within MPMX19_05048 at 533.552 kb on + strand, within MPMX19_05048 at 533.552 kb on + strand, within MPMX19_05048 at 533.552 kb on + strand, within MPMX19_05048 at 533.552 kb on + strand, within MPMX19_05048 at 533.552 kb on + strand, within MPMX19_05048 at 533.553 kb on - strand, within MPMX19_05048 at 533.553 kb on - strand, within MPMX19_05048 at 533.553 kb on - strand, within MPMX19_05048 at 533.553 kb on - strand, within MPMX19_05048 at 533.553 kb on - strand, within MPMX19_05048 at 533.553 kb on - strand, within MPMX19_05048 at 533.617 kb on - strand, within MPMX19_05048 at 533.617 kb on - strand, within MPMX19_05048 at 533.637 kb on + strand, within MPMX19_05048 at 533.637 kb on + strand, within MPMX19_05048 at 533.638 kb on - strand, within MPMX19_05048 at 533.638 kb on - strand, within MPMX19_05048 at 533.639 kb on + strand, within MPMX19_05048 at 533.639 kb on + strand, within MPMX19_05048 at 533.639 kb on + strand, within MPMX19_05048 at 533.639 kb on + strand, within MPMX19_05048 at 533.639 kb on + strand, within MPMX19_05048 at 533.639 kb on + strand, within MPMX19_05048 at 533.640 kb on - strand, within MPMX19_05048 at 533.640 kb on - strand, within MPMX19_05048 at 533.872 kb on + strand, within MPMX19_05049 at 534.049 kb on - strand at 534.049 kb on - strand at 534.214 kb on + strand at 534.214 kb on + strand at 534.214 kb on + strand at 534.214 kb on + strand at 534.215 kb on - strand at 534.215 kb on - strand at 534.215 kb on - strand at 534.215 kb on - strand at 534.265 kb on + strand, within MPMX19_05050 at 534.265 kb on + strand, within MPMX19_05050 at 534.265 kb on + strand, within MPMX19_05050 at 534.265 kb on + strand, within MPMX19_05050 at 534.266 kb on - strand, within MPMX19_05050 at 534.281 kb on + strand, within MPMX19_05050 at 534.281 kb on + strand, within MPMX19_05050 at 534.281 kb on + strand, within MPMX19_05050 at 534.281 kb on + strand, within MPMX19_05050 at 534.281 kb on + strand, within MPMX19_05050 at 534.281 kb on + strand, within MPMX19_05050 at 534.281 kb on + strand, within MPMX19_05050 at 534.282 kb on - strand, within MPMX19_05050 at 534.282 kb on - strand, within MPMX19_05050 at 534.282 kb on - strand, within MPMX19_05050 at 534.282 kb on - strand, within MPMX19_05050 at 534.282 kb on - strand, within MPMX19_05050 at 534.282 kb on - strand, within MPMX19_05050
Per-strain Table
Position Strand Gene LocusTag Fraction NF remove 531,492 + MPMX19_05046 0.49 -0.3 531,492 + MPMX19_05046 0.49 -1.8 531,492 + MPMX19_05046 0.49 +0.3 531,492 + MPMX19_05046 0.49 -0.2 531,492 + MPMX19_05046 0.49 -0.1 531,492 - MPMX19_05046 0.49 -0.6 531,493 - MPMX19_05046 0.49 +0.7 531,493 - MPMX19_05046 0.49 -1.4 531,493 - MPMX19_05046 0.49 -0.1 531,493 - MPMX19_05046 0.49 -2.9 531,493 - MPMX19_05046 0.49 +0.3 531,493 - MPMX19_05046 0.49 -1.3 531,493 - MPMX19_05046 0.49 +0.3 531,603 + MPMX19_05046 0.56 -0.1 531,604 - MPMX19_05046 0.56 -1.1 531,604 - MPMX19_05046 0.56 -1.1 531,993 + MPMX19_05046 0.79 -1.3 532,254 + -0.3 532,254 + -0.3 532,254 + +0.5 532,254 + +0.7 532,254 + +0.3 532,254 + +0.5 532,254 + +0.7 532,255 - -1.5 532,255 - -0.9 532,255 - +0.3 532,255 - +1.4 532,255 - +0.4 532,255 - +1.7 532,255 - +0.3 532,360 - +0.4 532,360 - +1.0 532,434 + -1.0 532,434 + -0.7 532,435 - -1.9 532,677 + MPMX19_05047 0.24 +0.9 532,677 + MPMX19_05047 0.24 +1.3 532,677 + MPMX19_05047 0.24 +1.0 532,677 + MPMX19_05047 0.24 +1.1 532,677 + MPMX19_05047 0.24 -1.2 532,677 + MPMX19_05047 0.24 -1.8 532,678 - MPMX19_05047 0.24 +0.1 532,678 - MPMX19_05047 0.24 +0.1 533,268 + MPMX19_05047 0.90 +0.3 533,268 + MPMX19_05047 0.90 -0.5 533,268 + MPMX19_05047 0.90 -0.1 533,268 + MPMX19_05047 0.90 -2.2 533,268 + MPMX19_05047 0.90 +0.4 533,268 + MPMX19_05047 0.90 +0.7 533,268 + MPMX19_05047 0.90 -0.3 533,268 + MPMX19_05047 0.90 +2.1 533,268 + MPMX19_05047 0.90 -0.3 533,269 - MPMX19_05047 0.90 +0.3 533,269 - MPMX19_05047 0.90 +1.7 533,269 - MPMX19_05047 0.90 +0.0 533,269 - MPMX19_05047 0.90 +0.5 533,269 - MPMX19_05047 0.90 +0.1 533,269 - MPMX19_05047 0.90 -0.3 533,269 - MPMX19_05047 0.90 -0.7 533,269 - MPMX19_05047 0.90 -0.6 533,269 - MPMX19_05047 0.90 -0.1 533,269 - MPMX19_05047 0.90 +0.3 533,269 - MPMX19_05047 0.90 -0.7 533,271 + -0.7 533,271 + +0.1 533,271 + +0.1 533,271 + -0.7 533,271 + -0.6 533,271 + -0.2 533,272 - +0.7 533,272 - +0.0 533,272 - -1.3 533,272 - -0.9 533,272 - +0.6 533,272 - -1.3 533,272 - -1.8 533,412 + -0.2 533,412 + -0.4 533,412 + +0.2 533,413 - -0.7 533,413 - -0.3 533,413 - +1.1 533,413 - +0.3 533,413 - -0.2 533,413 - +0.2 533,538 + MPMX19_05048 0.38 +0.4 533,539 - MPMX19_05048 0.39 -0.2 533,550 + MPMX19_05048 0.42 -0.5 533,550 + MPMX19_05048 0.42 -0.7 533,550 + MPMX19_05048 0.42 -1.3 533,550 + MPMX19_05048 0.42 -1.5 533,550 + MPMX19_05048 0.42 +1.2 533,551 - MPMX19_05048 0.43 -0.3 533,551 - MPMX19_05048 0.43 +1.7 533,551 - MPMX19_05048 0.43 -2.1 533,551 - MPMX19_05048 0.43 -1.2 533,551 - MPMX19_05048 0.43 +0.5 533,551 - MPMX19_05048 0.43 -1.4 533,551 - MPMX19_05048 0.43 -0.8 533,552 + MPMX19_05048 0.43 +0.5 533,552 + MPMX19_05048 0.43 -0.6 533,552 + MPMX19_05048 0.43 -2.2 533,552 + MPMX19_05048 0.43 -0.7 533,552 + MPMX19_05048 0.43 +0.1 533,552 + MPMX19_05048 0.43 -0.3 533,553 - MPMX19_05048 0.43 -0.1 533,553 - MPMX19_05048 0.43 -2.5 533,553 - MPMX19_05048 0.43 +0.3 533,553 - MPMX19_05048 0.43 +0.1 533,553 - MPMX19_05048 0.43 +0.8 533,553 - MPMX19_05048 0.43 -0.3 533,617 - MPMX19_05048 0.65 +0.6 533,617 - MPMX19_05048 0.65 +0.1 533,637 + MPMX19_05048 0.72 +0.2 533,637 + MPMX19_05048 0.72 -1.5 533,638 - MPMX19_05048 0.72 -1.1 533,638 - MPMX19_05048 0.72 +0.1 533,639 + MPMX19_05048 0.72 -1.4 533,639 + MPMX19_05048 0.72 +0.1 533,639 + MPMX19_05048 0.72 -0.1 533,639 + MPMX19_05048 0.72 -0.7 533,639 + MPMX19_05048 0.72 +0.1 533,639 + MPMX19_05048 0.72 -1.1 533,640 - MPMX19_05048 0.73 -2.0 533,640 - MPMX19_05048 0.73 -0.9 533,872 + MPMX19_05049 0.45 +1.7 534,049 - -0.7 534,049 - -0.3 534,214 + -1.3 534,214 + +0.1 534,214 + +0.7 534,214 + -0.5 534,215 - -1.7 534,215 - +1.7 534,215 - -0.5 534,215 - -0.0 534,265 + MPMX19_05050 0.11 -0.1 534,265 + MPMX19_05050 0.11 -2.0 534,265 + MPMX19_05050 0.11 -1.3 534,265 + MPMX19_05050 0.11 +1.3 534,266 - MPMX19_05050 0.11 -0.7 534,281 + MPMX19_05050 0.11 +1.1 534,281 + MPMX19_05050 0.11 -0.3 534,281 + MPMX19_05050 0.11 +0.5 534,281 + MPMX19_05050 0.11 -0.7 534,281 + MPMX19_05050 0.11 -0.3 534,281 + MPMX19_05050 0.11 +0.0 534,281 + MPMX19_05050 0.11 -0.0 534,282 - MPMX19_05050 0.12 -0.3 534,282 - MPMX19_05050 0.12 -0.1 534,282 - MPMX19_05050 0.12 +0.2 534,282 - MPMX19_05050 0.12 -0.8 534,282 - MPMX19_05050 0.12 -1.3 534,282 - MPMX19_05050 0.12 +0.2
Or see this region's nucleotide sequence