Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_05040

Experiment: NF

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_05039 and MPMX19_05040 are separated by 238 nucleotidesMPMX19_05040 and MPMX19_05041 overlap by 4 nucleotides MPMX19_05039: MPMX19_05039 - ATP synthase subunit beta, at 523,443 to 524,906 _05039 MPMX19_05040: MPMX19_05040 - hypothetical protein, at 525,145 to 525,705 _05040 MPMX19_05041: MPMX19_05041 - 1,3,6,8-tetrahydroxynaphthalene synthase, at 525,702 to 526,760 _05041 Position (kb) 525 526Strain fitness (log2 ratio) -2 -1 0 1 2at 525.085 kb on + strandat 525.085 kb on + strandat 525.085 kb on + strandat 525.085 kb on + strandat 525.085 kb on + strandat 525.085 kb on + strandat 525.085 kb on + strandat 525.085 kb on + strandat 525.085 kb on + strandat 525.086 kb on - strandat 525.086 kb on - strandat 525.086 kb on - strandat 525.086 kb on - strandat 525.086 kb on - strandat 525.086 kb on - strandat 525.086 kb on - strandat 525.086 kb on - strandat 525.086 kb on - strandat 525.086 kb on - strandat 525.086 kb on - strandat 525.086 kb on - strandat 525.146 kb on + strandat 525.251 kb on + strand, within MPMX19_05040at 525.252 kb on - strand, within MPMX19_05040at 525.308 kb on + strand, within MPMX19_05040at 525.308 kb on + strand, within MPMX19_05040at 525.308 kb on + strand, within MPMX19_05040at 525.308 kb on + strand, within MPMX19_05040at 525.308 kb on + strand, within MPMX19_05040at 525.308 kb on + strand, within MPMX19_05040at 525.308 kb on + strand, within MPMX19_05040at 525.308 kb on + strand, within MPMX19_05040at 525.308 kb on + strand, within MPMX19_05040at 525.308 kb on + strand, within MPMX19_05040at 525.309 kb on - strand, within MPMX19_05040at 525.309 kb on - strand, within MPMX19_05040at 525.309 kb on - strand, within MPMX19_05040at 525.309 kb on - strand, within MPMX19_05040at 525.309 kb on - strand, within MPMX19_05040at 525.469 kb on + strand, within MPMX19_05040at 525.470 kb on - strand, within MPMX19_05040at 525.470 kb on - strand, within MPMX19_05040at 525.566 kb on + strand, within MPMX19_05040at 526.044 kb on + strand, within MPMX19_05041at 526.044 kb on + strand, within MPMX19_05041at 526.044 kb on + strand, within MPMX19_05041at 526.044 kb on + strand, within MPMX19_05041at 526.044 kb on + strand, within MPMX19_05041at 526.044 kb on + strand, within MPMX19_05041at 526.044 kb on + strand, within MPMX19_05041at 526.044 kb on + strand, within MPMX19_05041at 526.045 kb on - strand, within MPMX19_05041at 526.045 kb on - strand, within MPMX19_05041at 526.045 kb on - strand, within MPMX19_05041at 526.045 kb on - strand, within MPMX19_05041at 526.045 kb on - strand, within MPMX19_05041at 526.045 kb on - strand, within MPMX19_05041at 526.045 kb on - strand, within MPMX19_05041at 526.045 kb on - strand, within MPMX19_05041at 526.045 kb on - strand, within MPMX19_05041at 526.045 kb on - strand, within MPMX19_05041at 526.573 kb on + strand, within MPMX19_05041at 526.573 kb on + strand, within MPMX19_05041at 526.573 kb on + strand, within MPMX19_05041at 526.574 kb on - strand, within MPMX19_05041at 526.704 kb on + strandat 526.704 kb on + strandat 526.704 kb on + strandat 526.704 kb on + strandat 526.705 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NF
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525,085 + -1.4
525,085 + -0.1
525,085 + -1.1
525,085 + -0.3
525,085 + -0.3
525,085 + +0.3
525,085 + -0.1
525,085 + -1.7
525,085 + +0.4
525,086 - +1.1
525,086 - -0.1
525,086 - +0.1
525,086 - +1.4
525,086 - -1.9
525,086 - +0.7
525,086 - -0.0
525,086 - +0.4
525,086 - -0.3
525,086 - +0.0
525,086 - -1.1
525,086 - +1.3
525,146 + +0.3
525,251 + MPMX19_05040 0.19 -0.6
525,252 - MPMX19_05040 0.19 +0.2
525,308 + MPMX19_05040 0.29 +0.8
525,308 + MPMX19_05040 0.29 +0.3
525,308 + MPMX19_05040 0.29 -0.2
525,308 + MPMX19_05040 0.29 -0.2
525,308 + MPMX19_05040 0.29 +0.1
525,308 + MPMX19_05040 0.29 -0.5
525,308 + MPMX19_05040 0.29 +0.9
525,308 + MPMX19_05040 0.29 -0.3
525,308 + MPMX19_05040 0.29 -0.4
525,308 + MPMX19_05040 0.29 -2.0
525,309 - MPMX19_05040 0.29 +0.4
525,309 - MPMX19_05040 0.29 +0.5
525,309 - MPMX19_05040 0.29 +0.2
525,309 - MPMX19_05040 0.29 -0.7
525,309 - MPMX19_05040 0.29 -0.2
525,469 + MPMX19_05040 0.58 +0.9
525,470 - MPMX19_05040 0.58 -0.3
525,470 - MPMX19_05040 0.58 +0.5
525,566 + MPMX19_05040 0.75 +2.3
526,044 + MPMX19_05041 0.32 -1.2
526,044 + MPMX19_05041 0.32 +0.9
526,044 + MPMX19_05041 0.32 -1.1
526,044 + MPMX19_05041 0.32 -0.9
526,044 + MPMX19_05041 0.32 -0.5
526,044 + MPMX19_05041 0.32 -1.4
526,044 + MPMX19_05041 0.32 -1.3
526,044 + MPMX19_05041 0.32 -0.7
526,045 - MPMX19_05041 0.32 -0.6
526,045 - MPMX19_05041 0.32 +0.7
526,045 - MPMX19_05041 0.32 -1.5
526,045 - MPMX19_05041 0.32 -0.2
526,045 - MPMX19_05041 0.32 +1.1
526,045 - MPMX19_05041 0.32 +0.1
526,045 - MPMX19_05041 0.32 -0.4
526,045 - MPMX19_05041 0.32 -0.3
526,045 - MPMX19_05041 0.32 -1.5
526,045 - MPMX19_05041 0.32 -0.9
526,573 + MPMX19_05041 0.82 -0.5
526,573 + MPMX19_05041 0.82 -1.0
526,573 + MPMX19_05041 0.82 -0.4
526,574 - MPMX19_05041 0.82 +0.1
526,704 + -1.1
526,704 + -1.0
526,704 + -0.8
526,704 + +0.4
526,705 - -0.9

Or see this region's nucleotide sequence