Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_04995

Experiment: NF

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_04994 and MPMX19_04995 overlap by 4 nucleotidesMPMX19_04995 and MPMX19_04996 are separated by 25 nucleotidesMPMX19_04996 and MPMX19_04997 are separated by 33 nucleotides MPMX19_04994: MPMX19_04994 - Aminodeoxychorismate synthase component 1, at 474,472 to 475,839 _04994 MPMX19_04995: MPMX19_04995 - D-alanine aminotransferase, at 475,836 to 476,642 _04995 MPMX19_04996: MPMX19_04996 - hypothetical protein, at 476,668 to 477,111 _04996 MPMX19_04997: MPMX19_04997 - hypothetical protein, at 477,145 to 478,764 _04997 Position (kb) 475 476 477Strain fitness (log2 ratio) -3 -2 -1 0 1at 474.847 kb on + strand, within MPMX19_04994at 474.847 kb on + strand, within MPMX19_04994at 474.847 kb on + strand, within MPMX19_04994at 474.848 kb on - strand, within MPMX19_04994at 474.848 kb on - strand, within MPMX19_04994at 474.848 kb on - strand, within MPMX19_04994at 474.848 kb on - strand, within MPMX19_04994at 474.848 kb on - strand, within MPMX19_04994at 475.022 kb on - strand, within MPMX19_04994at 475.022 kb on - strand, within MPMX19_04994at 475.022 kb on - strand, within MPMX19_04994at 475.022 kb on - strand, within MPMX19_04994at 475.051 kb on + strand, within MPMX19_04994at 475.051 kb on + strand, within MPMX19_04994at 475.051 kb on + strand, within MPMX19_04994at 475.051 kb on + strand, within MPMX19_04994at 475.051 kb on + strand, within MPMX19_04994at 475.051 kb on + strand, within MPMX19_04994at 475.051 kb on + strand, within MPMX19_04994at 475.051 kb on + strand, within MPMX19_04994at 475.051 kb on + strand, within MPMX19_04994at 475.051 kb on + strand, within MPMX19_04994at 475.051 kb on + strand, within MPMX19_04994at 475.051 kb on + strand, within MPMX19_04994at 475.051 kb on + strand, within MPMX19_04994at 475.051 kb on + strand, within MPMX19_04994at 475.051 kb on + strand, within MPMX19_04994at 475.051 kb on + strand, within MPMX19_04994at 475.051 kb on + strand, within MPMX19_04994at 475.051 kb on + strand, within MPMX19_04994at 475.051 kb on + strand, within MPMX19_04994at 475.051 kb on + strand, within MPMX19_04994at 475.051 kb on + strand, within MPMX19_04994at 475.051 kb on + strand, within MPMX19_04994at 475.052 kb on - strand, within MPMX19_04994at 475.052 kb on - strand, within MPMX19_04994at 475.052 kb on - strand, within MPMX19_04994at 475.052 kb on - strand, within MPMX19_04994at 475.052 kb on - strand, within MPMX19_04994at 475.052 kb on - strand, within MPMX19_04994at 475.052 kb on - strand, within MPMX19_04994at 475.053 kb on + strand, within MPMX19_04994at 475.053 kb on + strand, within MPMX19_04994at 475.053 kb on + strand, within MPMX19_04994at 475.053 kb on + strand, within MPMX19_04994at 475.054 kb on - strand, within MPMX19_04994at 475.072 kb on + strand, within MPMX19_04994at 475.072 kb on + strand, within MPMX19_04994at 475.072 kb on + strand, within MPMX19_04994at 475.072 kb on + strand, within MPMX19_04994at 475.072 kb on + strand, within MPMX19_04994at 475.072 kb on + strand, within MPMX19_04994at 475.072 kb on + strand, within MPMX19_04994at 475.072 kb on + strand, within MPMX19_04994at 475.072 kb on + strand, within MPMX19_04994at 475.072 kb on + strand, within MPMX19_04994at 475.072 kb on + strand, within MPMX19_04994at 475.072 kb on + strand, within MPMX19_04994at 475.072 kb on + strand, within MPMX19_04994at 475.072 kb on + strand, within MPMX19_04994at 475.072 kb on + strand, within MPMX19_04994at 475.072 kb on + strand, within MPMX19_04994at 475.072 kb on + strand, within MPMX19_04994at 475.072 kb on + strand, within MPMX19_04994at 475.072 kb on + strand, within MPMX19_04994at 475.073 kb on - strand, within MPMX19_04994at 475.073 kb on - strand, within MPMX19_04994at 475.073 kb on - strand, within MPMX19_04994at 475.073 kb on - strand, within MPMX19_04994at 475.073 kb on - strand, within MPMX19_04994at 475.129 kb on + strand, within MPMX19_04994at 475.129 kb on + strand, within MPMX19_04994at 475.129 kb on + strand, within MPMX19_04994at 475.129 kb on + strand, within MPMX19_04994at 475.129 kb on + strand, within MPMX19_04994at 475.129 kb on + strand, within MPMX19_04994at 475.129 kb on + strand, within MPMX19_04994at 475.129 kb on + strand, within MPMX19_04994at 475.129 kb on + strand, within MPMX19_04994at 475.129 kb on + strand, within MPMX19_04994at 475.129 kb on + strand, within MPMX19_04994at 475.129 kb on + strand, within MPMX19_04994at 475.129 kb on + strand, within MPMX19_04994at 475.129 kb on + strand, within MPMX19_04994at 475.130 kb on - strand, within MPMX19_04994at 475.130 kb on - strand, within MPMX19_04994at 475.130 kb on - strand, within MPMX19_04994at 475.130 kb on - strand, within MPMX19_04994at 475.130 kb on - strand, within MPMX19_04994at 475.130 kb on - strand, within MPMX19_04994at 475.130 kb on - strand, within MPMX19_04994at 475.130 kb on - strand, within MPMX19_04994at 475.138 kb on + strand, within MPMX19_04994at 475.139 kb on - strand, within MPMX19_04994at 475.139 kb on - strand, within MPMX19_04994at 475.624 kb on + strand, within MPMX19_04994at 475.624 kb on + strand, within MPMX19_04994at 475.624 kb on + strand, within MPMX19_04994at 475.624 kb on + strand, within MPMX19_04994at 475.625 kb on - strand, within MPMX19_04994at 475.625 kb on - strand, within MPMX19_04994at 476.025 kb on + strand, within MPMX19_04995at 476.026 kb on - strand, within MPMX19_04995at 476.026 kb on - strand, within MPMX19_04995at 476.026 kb on - strand, within MPMX19_04995at 476.026 kb on - strand, within MPMX19_04995at 476.026 kb on - strand, within MPMX19_04995at 476.026 kb on - strand, within MPMX19_04995at 476.026 kb on - strand, within MPMX19_04995at 476.277 kb on + strand, within MPMX19_04995at 476.277 kb on + strand, within MPMX19_04995at 476.277 kb on + strand, within MPMX19_04995at 476.278 kb on - strand, within MPMX19_04995at 476.278 kb on - strand, within MPMX19_04995at 476.278 kb on - strand, within MPMX19_04995at 476.278 kb on - strand, within MPMX19_04995at 476.640 kb on + strandat 476.640 kb on + strandat 476.640 kb on + strandat 476.640 kb on + strandat 476.640 kb on + strandat 476.640 kb on + strandat 476.641 kb on - strandat 476.641 kb on - strandat 476.641 kb on - strandat 476.641 kb on - strandat 476.641 kb on - strandat 476.658 kb on - strandat 476.800 kb on + strand, within MPMX19_04996at 476.800 kb on + strand, within MPMX19_04996at 476.801 kb on - strand, within MPMX19_04996at 476.920 kb on + strand, within MPMX19_04996at 476.920 kb on + strand, within MPMX19_04996at 476.921 kb on - strand, within MPMX19_04996at 477.161 kb on + strandat 477.161 kb on + strandat 477.161 kb on + strandat 477.161 kb on + strandat 477.161 kb on + strandat 477.162 kb on - strandat 477.404 kb on + strand, within MPMX19_04997at 477.404 kb on + strand, within MPMX19_04997at 477.405 kb on - strand, within MPMX19_04997at 477.405 kb on - strand, within MPMX19_04997at 477.405 kb on - strand, within MPMX19_04997at 477.410 kb on + strand, within MPMX19_04997at 477.410 kb on + strand, within MPMX19_04997at 477.410 kb on + strand, within MPMX19_04997at 477.410 kb on + strand, within MPMX19_04997at 477.410 kb on + strand, within MPMX19_04997at 477.410 kb on + strand, within MPMX19_04997at 477.410 kb on + strand, within MPMX19_04997at 477.410 kb on + strand, within MPMX19_04997at 477.410 kb on + strand, within MPMX19_04997at 477.410 kb on + strand, within MPMX19_04997at 477.410 kb on + strand, within MPMX19_04997at 477.411 kb on - strand, within MPMX19_04997at 477.411 kb on - strand, within MPMX19_04997at 477.411 kb on - strand, within MPMX19_04997at 477.411 kb on - strand, within MPMX19_04997at 477.411 kb on - strand, within MPMX19_04997at 477.411 kb on - strand, within MPMX19_04997at 477.411 kb on - strand, within MPMX19_04997at 477.411 kb on - strand, within MPMX19_04997at 477.411 kb on - strand, within MPMX19_04997at 477.411 kb on - strand, within MPMX19_04997at 477.411 kb on - strand, within MPMX19_04997at 477.411 kb on - strand, within MPMX19_04997at 477.411 kb on - strand, within MPMX19_04997at 477.411 kb on - strand, within MPMX19_04997at 477.411 kb on - strand, within MPMX19_04997at 477.411 kb on - strand, within MPMX19_04997at 477.452 kb on + strand, within MPMX19_04997at 477.452 kb on + strand, within MPMX19_04997at 477.452 kb on + strand, within MPMX19_04997at 477.452 kb on + strand, within MPMX19_04997at 477.452 kb on + strand, within MPMX19_04997at 477.452 kb on + strand, within MPMX19_04997at 477.452 kb on + strand, within MPMX19_04997at 477.452 kb on + strand, within MPMX19_04997at 477.452 kb on + strand, within MPMX19_04997at 477.452 kb on + strand, within MPMX19_04997at 477.453 kb on - strand, within MPMX19_04997at 477.453 kb on - strand, within MPMX19_04997at 477.453 kb on - strand, within MPMX19_04997at 477.453 kb on - strand, within MPMX19_04997at 477.453 kb on - strand, within MPMX19_04997at 477.453 kb on - strand, within MPMX19_04997at 477.453 kb on - strand, within MPMX19_04997at 477.453 kb on - strand, within MPMX19_04997at 477.453 kb on - strand, within MPMX19_04997at 477.453 kb on - strand, within MPMX19_04997at 477.453 kb on - strand, within MPMX19_04997at 477.453 kb on - strand, within MPMX19_04997at 477.453 kb on - strand, within MPMX19_04997at 477.504 kb on - strand, within MPMX19_04997

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Per-strain Table

Position Strand Gene LocusTag Fraction NF
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474,847 + MPMX19_04994 0.27 -1.1
474,847 + MPMX19_04994 0.27 +0.7
474,847 + MPMX19_04994 0.27 +0.1
474,848 - MPMX19_04994 0.27 -3.2
474,848 - MPMX19_04994 0.27 -1.6
474,848 - MPMX19_04994 0.27 -0.6
474,848 - MPMX19_04994 0.27 -1.7
474,848 - MPMX19_04994 0.27 -0.2
475,022 - MPMX19_04994 0.40 -1.1
475,022 - MPMX19_04994 0.40 -0.5
475,022 - MPMX19_04994 0.40 -0.8
475,022 - MPMX19_04994 0.40 -0.2
475,051 + MPMX19_04994 0.42 -2.1
475,051 + MPMX19_04994 0.42 +0.8
475,051 + MPMX19_04994 0.42 -0.1
475,051 + MPMX19_04994 0.42 +0.6
475,051 + MPMX19_04994 0.42 +1.4
475,051 + MPMX19_04994 0.42 -0.3
475,051 + MPMX19_04994 0.42 -0.1
475,051 + MPMX19_04994 0.42 -1.6
475,051 + MPMX19_04994 0.42 +0.2
475,051 + MPMX19_04994 0.42 +0.6
475,051 + MPMX19_04994 0.42 +0.1
475,051 + MPMX19_04994 0.42 -1.3
475,051 + MPMX19_04994 0.42 -1.8
475,051 + MPMX19_04994 0.42 -0.8
475,051 + MPMX19_04994 0.42 +0.1
475,051 + MPMX19_04994 0.42 -0.8
475,051 + MPMX19_04994 0.42 +0.1
475,051 + MPMX19_04994 0.42 +1.3
475,051 + MPMX19_04994 0.42 -2.0
475,051 + MPMX19_04994 0.42 +0.1
475,051 + MPMX19_04994 0.42 +1.0
475,051 + MPMX19_04994 0.42 -0.1
475,052 - MPMX19_04994 0.42 -2.1
475,052 - MPMX19_04994 0.42 -0.6
475,052 - MPMX19_04994 0.42 +0.7
475,052 - MPMX19_04994 0.42 +0.5
475,052 - MPMX19_04994 0.42 -1.6
475,052 - MPMX19_04994 0.42 -1.9
475,052 - MPMX19_04994 0.42 -1.7
475,053 + MPMX19_04994 0.42 -0.0
475,053 + MPMX19_04994 0.42 -1.8
475,053 + MPMX19_04994 0.42 -1.1
475,053 + MPMX19_04994 0.42 +1.1
475,054 - MPMX19_04994 0.43 -0.1
475,072 + MPMX19_04994 0.44 -0.5
475,072 + MPMX19_04994 0.44 -1.6
475,072 + MPMX19_04994 0.44 +0.3
475,072 + MPMX19_04994 0.44 +0.1
475,072 + MPMX19_04994 0.44 -2.2
475,072 + MPMX19_04994 0.44 -0.7
475,072 + MPMX19_04994 0.44 +0.3
475,072 + MPMX19_04994 0.44 +0.2
475,072 + MPMX19_04994 0.44 +0.0
475,072 + MPMX19_04994 0.44 -0.1
475,072 + MPMX19_04994 0.44 -0.9
475,072 + MPMX19_04994 0.44 -0.2
475,072 + MPMX19_04994 0.44 -1.4
475,072 + MPMX19_04994 0.44 +0.0
475,072 + MPMX19_04994 0.44 -0.8
475,072 + MPMX19_04994 0.44 +1.0
475,072 + MPMX19_04994 0.44 +0.2
475,072 + MPMX19_04994 0.44 -0.8
475,072 + MPMX19_04994 0.44 -1.1
475,073 - MPMX19_04994 0.44 -2.6
475,073 - MPMX19_04994 0.44 -1.1
475,073 - MPMX19_04994 0.44 +1.4
475,073 - MPMX19_04994 0.44 +1.0
475,073 - MPMX19_04994 0.44 -0.8
475,129 + MPMX19_04994 0.48 +1.0
475,129 + MPMX19_04994 0.48 -0.2
475,129 + MPMX19_04994 0.48 -0.8
475,129 + MPMX19_04994 0.48 -0.6
475,129 + MPMX19_04994 0.48 +0.2
475,129 + MPMX19_04994 0.48 -0.7
475,129 + MPMX19_04994 0.48 -1.3
475,129 + MPMX19_04994 0.48 +1.4
475,129 + MPMX19_04994 0.48 +1.0
475,129 + MPMX19_04994 0.48 +0.2
475,129 + MPMX19_04994 0.48 -0.3
475,129 + MPMX19_04994 0.48 -1.5
475,129 + MPMX19_04994 0.48 +0.0
475,129 + MPMX19_04994 0.48 -0.3
475,130 - MPMX19_04994 0.48 +0.1
475,130 - MPMX19_04994 0.48 -2.3
475,130 - MPMX19_04994 0.48 -1.5
475,130 - MPMX19_04994 0.48 -0.2
475,130 - MPMX19_04994 0.48 -0.1
475,130 - MPMX19_04994 0.48 +0.1
475,130 - MPMX19_04994 0.48 +0.1
475,130 - MPMX19_04994 0.48 -1.6
475,138 + MPMX19_04994 0.49 -0.2
475,139 - MPMX19_04994 0.49 -0.4
475,139 - MPMX19_04994 0.49 -1.4
475,624 + MPMX19_04994 0.84 -1.0
475,624 + MPMX19_04994 0.84 -1.0
475,624 + MPMX19_04994 0.84 +0.0
475,624 + MPMX19_04994 0.84 -0.9
475,625 - MPMX19_04994 0.84 -0.4
475,625 - MPMX19_04994 0.84 -0.0
476,025 + MPMX19_04995 0.23 +0.5
476,026 - MPMX19_04995 0.24 -0.5
476,026 - MPMX19_04995 0.24 +1.6
476,026 - MPMX19_04995 0.24 -0.6
476,026 - MPMX19_04995 0.24 -0.9
476,026 - MPMX19_04995 0.24 +0.3
476,026 - MPMX19_04995 0.24 -1.1
476,026 - MPMX19_04995 0.24 -0.5
476,277 + MPMX19_04995 0.55 +0.2
476,277 + MPMX19_04995 0.55 -0.4
476,277 + MPMX19_04995 0.55 +0.4
476,278 - MPMX19_04995 0.55 -1.4
476,278 - MPMX19_04995 0.55 +0.3
476,278 - MPMX19_04995 0.55 -0.6
476,278 - MPMX19_04995 0.55 +0.5
476,640 + +0.1
476,640 + -2.0
476,640 + +1.0
476,640 + -0.4
476,640 + +0.4
476,640 + +1.7
476,641 - -1.2
476,641 - -0.1
476,641 - -1.0
476,641 - -0.0
476,641 - -1.1
476,658 - +0.9
476,800 + MPMX19_04996 0.30 -2.1
476,800 + MPMX19_04996 0.30 -0.8
476,801 - MPMX19_04996 0.30 -2.3
476,920 + MPMX19_04996 0.57 +1.1
476,920 + MPMX19_04996 0.57 -1.2
476,921 - MPMX19_04996 0.57 -0.5
477,161 + -0.6
477,161 + -0.8
477,161 + -1.7
477,161 + -0.6
477,161 + +0.6
477,162 - -1.0
477,404 + MPMX19_04997 0.16 -0.7
477,404 + MPMX19_04997 0.16 -0.3
477,405 - MPMX19_04997 0.16 -1.0
477,405 - MPMX19_04997 0.16 -0.6
477,405 - MPMX19_04997 0.16 -1.4
477,410 + MPMX19_04997 0.16 -0.3
477,410 + MPMX19_04997 0.16 +0.9
477,410 + MPMX19_04997 0.16 +0.4
477,410 + MPMX19_04997 0.16 -0.2
477,410 + MPMX19_04997 0.16 -1.3
477,410 + MPMX19_04997 0.16 +1.3
477,410 + MPMX19_04997 0.16 +0.3
477,410 + MPMX19_04997 0.16 -1.1
477,410 + MPMX19_04997 0.16 +0.4
477,410 + MPMX19_04997 0.16 +0.4
477,410 + MPMX19_04997 0.16 +0.8
477,411 - MPMX19_04997 0.16 -0.6
477,411 - MPMX19_04997 0.16 -0.0
477,411 - MPMX19_04997 0.16 +0.3
477,411 - MPMX19_04997 0.16 -0.5
477,411 - MPMX19_04997 0.16 -0.0
477,411 - MPMX19_04997 0.16 -1.0
477,411 - MPMX19_04997 0.16 -0.8
477,411 - MPMX19_04997 0.16 -1.1
477,411 - MPMX19_04997 0.16 +0.5
477,411 - MPMX19_04997 0.16 +0.0
477,411 - MPMX19_04997 0.16 +1.0
477,411 - MPMX19_04997 0.16 +0.3
477,411 - MPMX19_04997 0.16 +1.3
477,411 - MPMX19_04997 0.16 -0.3
477,411 - MPMX19_04997 0.16 +0.4
477,411 - MPMX19_04997 0.16 -2.4
477,452 + MPMX19_04997 0.19 -1.1
477,452 + MPMX19_04997 0.19 +0.2
477,452 + MPMX19_04997 0.19 -3.5
477,452 + MPMX19_04997 0.19 -0.7
477,452 + MPMX19_04997 0.19 -0.0
477,452 + MPMX19_04997 0.19 -0.3
477,452 + MPMX19_04997 0.19 -1.5
477,452 + MPMX19_04997 0.19 -0.1
477,452 + MPMX19_04997 0.19 -0.0
477,452 + MPMX19_04997 0.19 +0.3
477,453 - MPMX19_04997 0.19 -1.4
477,453 - MPMX19_04997 0.19 -1.8
477,453 - MPMX19_04997 0.19 +1.3
477,453 - MPMX19_04997 0.19 -1.3
477,453 - MPMX19_04997 0.19 -0.3
477,453 - MPMX19_04997 0.19 +0.9
477,453 - MPMX19_04997 0.19 +0.1
477,453 - MPMX19_04997 0.19 +0.6
477,453 - MPMX19_04997 0.19 -0.5
477,453 - MPMX19_04997 0.19 -0.7
477,453 - MPMX19_04997 0.19 -1.3
477,453 - MPMX19_04997 0.19 +0.0
477,453 - MPMX19_04997 0.19 -0.5
477,504 - MPMX19_04997 0.22 -0.2

Or see this region's nucleotide sequence