Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_04978

Experiment: NF

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_04977 and MPMX19_04978 are separated by 41 nucleotidesMPMX19_04978 and MPMX19_04979 overlap by 4 nucleotides MPMX19_04977: MPMX19_04977 - Cellulose synthase catalytic subunit [UDP-forming], at 446,640 to 448,925 _04977 MPMX19_04978: MPMX19_04978 - hypothetical protein, at 448,967 to 451,549 _04978 MPMX19_04979: MPMX19_04979 - Minor endoglucanase Y, at 451,546 to 452,616 _04979 Position (kb) 448 449 450 451 452Strain fitness (log2 ratio) -2 -1 0 1 2at 448.005 kb on + strand, within MPMX19_04977at 448.005 kb on + strand, within MPMX19_04977at 448.005 kb on + strand, within MPMX19_04977at 448.005 kb on + strand, within MPMX19_04977at 448.005 kb on + strand, within MPMX19_04977at 448.005 kb on + strand, within MPMX19_04977at 448.005 kb on + strand, within MPMX19_04977at 448.005 kb on + strand, within MPMX19_04977at 448.005 kb on + strand, within MPMX19_04977at 448.005 kb on + strand, within MPMX19_04977at 448.005 kb on + strand, within MPMX19_04977at 448.005 kb on + strand, within MPMX19_04977at 448.005 kb on + strand, within MPMX19_04977at 448.006 kb on - strand, within MPMX19_04977at 448.006 kb on - strand, within MPMX19_04977at 448.006 kb on - strand, within MPMX19_04977at 448.006 kb on - strand, within MPMX19_04977at 448.006 kb on - strand, within MPMX19_04977at 448.006 kb on - strand, within MPMX19_04977at 448.006 kb on - strand, within MPMX19_04977at 448.006 kb on - strand, within MPMX19_04977at 448.006 kb on - strand, within MPMX19_04977at 448.006 kb on - strand, within MPMX19_04977at 448.006 kb on - strand, within MPMX19_04977at 448.006 kb on - strand, within MPMX19_04977at 448.006 kb on - strand, within MPMX19_04977at 448.006 kb on - strand, within MPMX19_04977at 448.006 kb on - strand, within MPMX19_04977at 448.029 kb on + strand, within MPMX19_04977at 448.029 kb on + strand, within MPMX19_04977at 448.030 kb on - strand, within MPMX19_04977at 448.143 kb on + strand, within MPMX19_04977at 448.143 kb on + strand, within MPMX19_04977at 448.143 kb on + strand, within MPMX19_04977at 448.143 kb on + strand, within MPMX19_04977at 448.143 kb on + strand, within MPMX19_04977at 448.143 kb on + strand, within MPMX19_04977at 448.144 kb on - strand, within MPMX19_04977at 448.144 kb on - strand, within MPMX19_04977at 448.144 kb on - strand, within MPMX19_04977at 448.144 kb on - strand, within MPMX19_04977at 448.144 kb on - strand, within MPMX19_04977at 448.144 kb on - strand, within MPMX19_04977at 448.149 kb on + strand, within MPMX19_04977at 448.149 kb on + strand, within MPMX19_04977at 448.149 kb on + strand, within MPMX19_04977at 448.149 kb on + strand, within MPMX19_04977at 448.149 kb on + strand, within MPMX19_04977at 448.150 kb on - strand, within MPMX19_04977at 448.150 kb on - strand, within MPMX19_04977at 448.150 kb on - strand, within MPMX19_04977at 448.332 kb on + strand, within MPMX19_04977at 448.333 kb on - strand, within MPMX19_04977at 448.333 kb on - strand, within MPMX19_04977at 448.333 kb on - strand, within MPMX19_04977at 448.428 kb on + strand, within MPMX19_04977at 448.428 kb on + strand, within MPMX19_04977at 448.428 kb on + strand, within MPMX19_04977at 448.428 kb on + strand, within MPMX19_04977at 448.428 kb on + strand, within MPMX19_04977at 448.429 kb on - strand, within MPMX19_04977at 448.939 kb on + strandat 449.034 kb on + strandat 449.034 kb on + strandat 449.034 kb on + strandat 449.034 kb on + strandat 449.034 kb on + strandat 449.035 kb on - strandat 449.207 kb on + strandat 449.207 kb on + strandat 449.208 kb on - strandat 449.417 kb on + strand, within MPMX19_04978at 449.417 kb on + strand, within MPMX19_04978at 449.417 kb on + strand, within MPMX19_04978at 449.417 kb on + strand, within MPMX19_04978at 449.417 kb on + strand, within MPMX19_04978at 449.417 kb on + strand, within MPMX19_04978at 449.417 kb on + strand, within MPMX19_04978at 449.417 kb on + strand, within MPMX19_04978at 449.417 kb on + strand, within MPMX19_04978at 449.417 kb on + strand, within MPMX19_04978at 449.417 kb on + strand, within MPMX19_04978at 449.418 kb on - strand, within MPMX19_04978at 449.418 kb on - strand, within MPMX19_04978at 449.418 kb on - strand, within MPMX19_04978at 449.418 kb on - strand, within MPMX19_04978at 449.418 kb on - strand, within MPMX19_04978at 449.418 kb on - strand, within MPMX19_04978at 449.418 kb on - strand, within MPMX19_04978at 449.418 kb on - strand, within MPMX19_04978at 449.418 kb on - strand, within MPMX19_04978at 449.418 kb on - strand, within MPMX19_04978at 449.418 kb on - strand, within MPMX19_04978at 449.618 kb on + strand, within MPMX19_04978at 449.618 kb on + strand, within MPMX19_04978at 449.619 kb on - strand, within MPMX19_04978at 449.619 kb on - strand, within MPMX19_04978at 449.619 kb on - strand, within MPMX19_04978at 449.619 kb on - strand, within MPMX19_04978at 449.619 kb on - strand, within MPMX19_04978at 449.619 kb on - strand, within MPMX19_04978at 449.862 kb on - strand, within MPMX19_04978at 449.862 kb on - strand, within MPMX19_04978at 449.867 kb on + strand, within MPMX19_04978at 449.867 kb on + strand, within MPMX19_04978at 449.867 kb on + strand, within MPMX19_04978at 449.868 kb on - strand, within MPMX19_04978at 449.868 kb on - strand, within MPMX19_04978at 449.868 kb on - strand, within MPMX19_04978at 449.868 kb on - strand, within MPMX19_04978at 450.131 kb on + strand, within MPMX19_04978at 450.301 kb on + strand, within MPMX19_04978at 450.301 kb on + strand, within MPMX19_04978at 450.302 kb on - strand, within MPMX19_04978at 450.533 kb on + strand, within MPMX19_04978at 450.533 kb on + strand, within MPMX19_04978at 450.533 kb on + strand, within MPMX19_04978at 450.674 kb on + strand, within MPMX19_04978at 450.674 kb on + strand, within MPMX19_04978at 450.674 kb on + strand, within MPMX19_04978at 450.674 kb on + strand, within MPMX19_04978at 450.674 kb on + strand, within MPMX19_04978at 450.674 kb on + strand, within MPMX19_04978at 450.675 kb on - strand, within MPMX19_04978at 450.675 kb on - strand, within MPMX19_04978at 451.103 kb on + strand, within MPMX19_04978at 451.103 kb on + strand, within MPMX19_04978at 451.103 kb on + strand, within MPMX19_04978at 451.103 kb on + strand, within MPMX19_04978at 451.103 kb on + strand, within MPMX19_04978at 451.104 kb on - strand, within MPMX19_04978at 451.104 kb on - strand, within MPMX19_04978at 451.104 kb on - strand, within MPMX19_04978at 451.104 kb on - strand, within MPMX19_04978at 451.104 kb on - strand, within MPMX19_04978at 451.104 kb on - strand, within MPMX19_04978at 451.196 kb on + strand, within MPMX19_04978at 451.197 kb on - strand, within MPMX19_04978at 451.376 kb on + strandat 451.377 kb on - strandat 451.657 kb on + strand, within MPMX19_04979at 451.657 kb on + strand, within MPMX19_04979at 451.657 kb on + strand, within MPMX19_04979at 451.658 kb on - strand, within MPMX19_04979at 451.658 kb on - strand, within MPMX19_04979at 451.658 kb on - strand, within MPMX19_04979at 451.762 kb on + strand, within MPMX19_04979at 451.978 kb on + strand, within MPMX19_04979at 451.979 kb on - strand, within MPMX19_04979at 451.979 kb on - strand, within MPMX19_04979at 451.979 kb on - strand, within MPMX19_04979at 452.110 kb on + strand, within MPMX19_04979at 452.111 kb on - strand, within MPMX19_04979at 452.111 kb on - strand, within MPMX19_04979at 452.111 kb on - strand, within MPMX19_04979at 452.296 kb on + strand, within MPMX19_04979at 452.296 kb on + strand, within MPMX19_04979at 452.296 kb on + strand, within MPMX19_04979at 452.296 kb on + strand, within MPMX19_04979at 452.296 kb on + strand, within MPMX19_04979at 452.297 kb on - strand, within MPMX19_04979at 452.297 kb on - strand, within MPMX19_04979at 452.297 kb on - strand, within MPMX19_04979at 452.297 kb on - strand, within MPMX19_04979at 452.297 kb on - strand, within MPMX19_04979at 452.297 kb on - strand, within MPMX19_04979at 452.302 kb on + strand, within MPMX19_04979at 452.302 kb on + strand, within MPMX19_04979at 452.303 kb on - strand, within MPMX19_04979at 452.303 kb on - strand, within MPMX19_04979at 452.303 kb on - strand, within MPMX19_04979at 452.303 kb on - strand, within MPMX19_04979at 452.326 kb on + strand, within MPMX19_04979at 452.326 kb on + strand, within MPMX19_04979at 452.326 kb on + strand, within MPMX19_04979at 452.326 kb on + strand, within MPMX19_04979at 452.327 kb on - strand, within MPMX19_04979at 452.327 kb on - strand, within MPMX19_04979at 452.327 kb on - strand, within MPMX19_04979at 452.327 kb on - strand, within MPMX19_04979at 452.327 kb on - strand, within MPMX19_04979at 452.327 kb on - strand, within MPMX19_04979at 452.327 kb on - strand, within MPMX19_04979at 452.356 kb on + strand, within MPMX19_04979at 452.356 kb on + strand, within MPMX19_04979at 452.357 kb on - strand, within MPMX19_04979at 452.357 kb on - strand, within MPMX19_04979at 452.357 kb on - strand, within MPMX19_04979at 452.359 kb on + strand, within MPMX19_04979at 452.359 kb on + strand, within MPMX19_04979at 452.359 kb on + strand, within MPMX19_04979at 452.359 kb on + strand, within MPMX19_04979at 452.359 kb on + strand, within MPMX19_04979at 452.360 kb on - strand, within MPMX19_04979at 452.360 kb on - strand, within MPMX19_04979at 452.360 kb on - strand, within MPMX19_04979at 452.360 kb on - strand, within MPMX19_04979at 452.360 kb on - strand, within MPMX19_04979at 452.360 kb on - strand, within MPMX19_04979at 452.360 kb on - strand, within MPMX19_04979at 452.360 kb on - strand, within MPMX19_04979at 452.360 kb on - strand, within MPMX19_04979at 452.360 kb on - strand, within MPMX19_04979at 452.360 kb on - strand, within MPMX19_04979at 452.360 kb on - strand, within MPMX19_04979

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Per-strain Table

Position Strand Gene LocusTag Fraction NF
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448,005 + MPMX19_04977 0.60 +0.4
448,005 + MPMX19_04977 0.60 -1.3
448,005 + MPMX19_04977 0.60 -0.1
448,005 + MPMX19_04977 0.60 -1.8
448,005 + MPMX19_04977 0.60 +0.4
448,005 + MPMX19_04977 0.60 -0.7
448,005 + MPMX19_04977 0.60 -0.8
448,005 + MPMX19_04977 0.60 -1.5
448,005 + MPMX19_04977 0.60 -0.5
448,005 + MPMX19_04977 0.60 +0.5
448,005 + MPMX19_04977 0.60 +0.8
448,005 + MPMX19_04977 0.60 -0.9
448,005 + MPMX19_04977 0.60 -0.2
448,006 - MPMX19_04977 0.60 +0.9
448,006 - MPMX19_04977 0.60 -1.3
448,006 - MPMX19_04977 0.60 -0.5
448,006 - MPMX19_04977 0.60 -0.3
448,006 - MPMX19_04977 0.60 -1.5
448,006 - MPMX19_04977 0.60 -1.6
448,006 - MPMX19_04977 0.60 +0.6
448,006 - MPMX19_04977 0.60 -1.5
448,006 - MPMX19_04977 0.60 +0.4
448,006 - MPMX19_04977 0.60 -0.2
448,006 - MPMX19_04977 0.60 +0.2
448,006 - MPMX19_04977 0.60 -0.7
448,006 - MPMX19_04977 0.60 -0.6
448,006 - MPMX19_04977 0.60 +0.6
448,006 - MPMX19_04977 0.60 -1.6
448,029 + MPMX19_04977 0.61 -0.3
448,029 + MPMX19_04977 0.61 -1.2
448,030 - MPMX19_04977 0.61 -0.1
448,143 + MPMX19_04977 0.66 +0.5
448,143 + MPMX19_04977 0.66 -1.5
448,143 + MPMX19_04977 0.66 -1.8
448,143 + MPMX19_04977 0.66 +0.1
448,143 + MPMX19_04977 0.66 +0.3
448,143 + MPMX19_04977 0.66 -2.3
448,144 - MPMX19_04977 0.66 +0.7
448,144 - MPMX19_04977 0.66 +0.1
448,144 - MPMX19_04977 0.66 -0.4
448,144 - MPMX19_04977 0.66 -0.3
448,144 - MPMX19_04977 0.66 -0.4
448,144 - MPMX19_04977 0.66 -0.9
448,149 + MPMX19_04977 0.66 -0.3
448,149 + MPMX19_04977 0.66 +0.5
448,149 + MPMX19_04977 0.66 -1.2
448,149 + MPMX19_04977 0.66 -1.9
448,149 + MPMX19_04977 0.66 -1.3
448,150 - MPMX19_04977 0.66 -1.5
448,150 - MPMX19_04977 0.66 +0.4
448,150 - MPMX19_04977 0.66 -0.3
448,332 + MPMX19_04977 0.74 -1.0
448,333 - MPMX19_04977 0.74 -0.1
448,333 - MPMX19_04977 0.74 -1.9
448,333 - MPMX19_04977 0.74 -2.4
448,428 + MPMX19_04977 0.78 -0.3
448,428 + MPMX19_04977 0.78 +0.2
448,428 + MPMX19_04977 0.78 +0.1
448,428 + MPMX19_04977 0.78 -0.0
448,428 + MPMX19_04977 0.78 -1.9
448,429 - MPMX19_04977 0.78 -1.4
448,939 + +0.3
449,034 + +0.5
449,034 + +0.3
449,034 + -1.0
449,034 + +1.2
449,034 + -1.8
449,035 - -1.3
449,207 + -0.0
449,207 + -0.6
449,208 - +0.1
449,417 + MPMX19_04978 0.17 -0.0
449,417 + MPMX19_04978 0.17 +0.2
449,417 + MPMX19_04978 0.17 -1.6
449,417 + MPMX19_04978 0.17 -0.7
449,417 + MPMX19_04978 0.17 +0.9
449,417 + MPMX19_04978 0.17 -0.6
449,417 + MPMX19_04978 0.17 +0.9
449,417 + MPMX19_04978 0.17 +1.0
449,417 + MPMX19_04978 0.17 -0.7
449,417 + MPMX19_04978 0.17 -0.3
449,417 + MPMX19_04978 0.17 -0.5
449,418 - MPMX19_04978 0.17 -1.3
449,418 - MPMX19_04978 0.17 -1.8
449,418 - MPMX19_04978 0.17 +0.3
449,418 - MPMX19_04978 0.17 -0.5
449,418 - MPMX19_04978 0.17 -0.6
449,418 - MPMX19_04978 0.17 -0.3
449,418 - MPMX19_04978 0.17 +0.2
449,418 - MPMX19_04978 0.17 -1.4
449,418 - MPMX19_04978 0.17 -0.4
449,418 - MPMX19_04978 0.17 -0.5
449,418 - MPMX19_04978 0.17 -0.9
449,618 + MPMX19_04978 0.25 +1.1
449,618 + MPMX19_04978 0.25 -0.0
449,619 - MPMX19_04978 0.25 +0.3
449,619 - MPMX19_04978 0.25 +0.8
449,619 - MPMX19_04978 0.25 +1.1
449,619 - MPMX19_04978 0.25 +0.0
449,619 - MPMX19_04978 0.25 -0.9
449,619 - MPMX19_04978 0.25 -0.7
449,862 - MPMX19_04978 0.35 +0.0
449,862 - MPMX19_04978 0.35 -0.5
449,867 + MPMX19_04978 0.35 -0.9
449,867 + MPMX19_04978 0.35 -1.3
449,867 + MPMX19_04978 0.35 -0.4
449,868 - MPMX19_04978 0.35 +0.1
449,868 - MPMX19_04978 0.35 +0.2
449,868 - MPMX19_04978 0.35 -0.9
449,868 - MPMX19_04978 0.35 -1.1
450,131 + MPMX19_04978 0.45 +0.7
450,301 + MPMX19_04978 0.52 -1.2
450,301 + MPMX19_04978 0.52 +0.1
450,302 - MPMX19_04978 0.52 -0.0
450,533 + MPMX19_04978 0.61 -0.0
450,533 + MPMX19_04978 0.61 -1.6
450,533 + MPMX19_04978 0.61 -0.8
450,674 + MPMX19_04978 0.66 -2.1
450,674 + MPMX19_04978 0.66 -0.5
450,674 + MPMX19_04978 0.66 +0.3
450,674 + MPMX19_04978 0.66 -1.5
450,674 + MPMX19_04978 0.66 +0.2
450,674 + MPMX19_04978 0.66 -1.1
450,675 - MPMX19_04978 0.66 -0.6
450,675 - MPMX19_04978 0.66 -0.8
451,103 + MPMX19_04978 0.83 -0.7
451,103 + MPMX19_04978 0.83 -0.5
451,103 + MPMX19_04978 0.83 +0.2
451,103 + MPMX19_04978 0.83 +0.1
451,103 + MPMX19_04978 0.83 +1.0
451,104 - MPMX19_04978 0.83 -0.6
451,104 - MPMX19_04978 0.83 -1.0
451,104 - MPMX19_04978 0.83 +0.5
451,104 - MPMX19_04978 0.83 +0.7
451,104 - MPMX19_04978 0.83 -1.2
451,104 - MPMX19_04978 0.83 +1.1
451,196 + MPMX19_04978 0.86 -0.4
451,197 - MPMX19_04978 0.86 -2.0
451,376 + -0.2
451,377 - -1.1
451,657 + MPMX19_04979 0.10 +1.0
451,657 + MPMX19_04979 0.10 +0.8
451,657 + MPMX19_04979 0.10 -0.7
451,658 - MPMX19_04979 0.10 -0.2
451,658 - MPMX19_04979 0.10 -0.8
451,658 - MPMX19_04979 0.10 -2.2
451,762 + MPMX19_04979 0.20 -1.8
451,978 + MPMX19_04979 0.40 -1.1
451,979 - MPMX19_04979 0.40 +0.5
451,979 - MPMX19_04979 0.40 -0.8
451,979 - MPMX19_04979 0.40 -0.3
452,110 + MPMX19_04979 0.53 -1.6
452,111 - MPMX19_04979 0.53 -0.2
452,111 - MPMX19_04979 0.53 +1.3
452,111 - MPMX19_04979 0.53 -0.2
452,296 + MPMX19_04979 0.70 -1.2
452,296 + MPMX19_04979 0.70 +0.2
452,296 + MPMX19_04979 0.70 -0.6
452,296 + MPMX19_04979 0.70 -0.0
452,296 + MPMX19_04979 0.70 -1.0
452,297 - MPMX19_04979 0.70 +1.7
452,297 - MPMX19_04979 0.70 -1.9
452,297 - MPMX19_04979 0.70 +0.7
452,297 - MPMX19_04979 0.70 +0.1
452,297 - MPMX19_04979 0.70 +2.1
452,297 - MPMX19_04979 0.70 +0.5
452,302 + MPMX19_04979 0.71 -0.3
452,302 + MPMX19_04979 0.71 +0.8
452,303 - MPMX19_04979 0.71 -1.0
452,303 - MPMX19_04979 0.71 +1.4
452,303 - MPMX19_04979 0.71 +0.4
452,303 - MPMX19_04979 0.71 -1.6
452,326 + MPMX19_04979 0.73 +0.1
452,326 + MPMX19_04979 0.73 -0.3
452,326 + MPMX19_04979 0.73 +0.3
452,326 + MPMX19_04979 0.73 -1.1
452,327 - MPMX19_04979 0.73 +1.2
452,327 - MPMX19_04979 0.73 -0.2
452,327 - MPMX19_04979 0.73 -0.7
452,327 - MPMX19_04979 0.73 -0.8
452,327 - MPMX19_04979 0.73 +0.4
452,327 - MPMX19_04979 0.73 +0.3
452,327 - MPMX19_04979 0.73 -1.0
452,356 + MPMX19_04979 0.76 -2.4
452,356 + MPMX19_04979 0.76 -0.3
452,357 - MPMX19_04979 0.76 -0.1
452,357 - MPMX19_04979 0.76 -1.5
452,357 - MPMX19_04979 0.76 +1.4
452,359 + MPMX19_04979 0.76 +0.1
452,359 + MPMX19_04979 0.76 -0.3
452,359 + MPMX19_04979 0.76 -0.0
452,359 + MPMX19_04979 0.76 -0.4
452,359 + MPMX19_04979 0.76 -0.2
452,360 - MPMX19_04979 0.76 -2.0
452,360 - MPMX19_04979 0.76 -0.1
452,360 - MPMX19_04979 0.76 -1.8
452,360 - MPMX19_04979 0.76 -0.5
452,360 - MPMX19_04979 0.76 +0.1
452,360 - MPMX19_04979 0.76 -0.0
452,360 - MPMX19_04979 0.76 -0.7
452,360 - MPMX19_04979 0.76 -2.2
452,360 - MPMX19_04979 0.76 +0.0
452,360 - MPMX19_04979 0.76 +0.1
452,360 - MPMX19_04979 0.76 -0.2
452,360 - MPMX19_04979 0.76 -0.6

Or see this region's nucleotide sequence