Experiment: NF
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_04972 and MPMX19_04973 are separated by 37 nucleotides MPMX19_04973 and MPMX19_04974 are separated by 11 nucleotides MPMX19_04974 and MPMX19_04975 overlap by 11 nucleotides
MPMX19_04972: MPMX19_04972 - hypothetical protein, at 442,395 to 443,723
_04972
MPMX19_04973: MPMX19_04973 - hypothetical protein, at 443,761 to 444,159
_04973
MPMX19_04974: MPMX19_04974 - Nitrobenzene nitroreductase, at 444,171 to 444,872
_04974
MPMX19_04975: MPMX19_04975 - hypothetical protein, at 444,862 to 445,359
_04975
Position (kb) 443
444
445 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 442.981 kb on - strand, within MPMX19_04972 at 443.049 kb on + strand, within MPMX19_04972 at 443.049 kb on + strand, within MPMX19_04972 at 443.049 kb on + strand, within MPMX19_04972 at 443.049 kb on + strand, within MPMX19_04972 at 443.050 kb on - strand, within MPMX19_04972 at 443.268 kb on + strand, within MPMX19_04972 at 443.268 kb on + strand, within MPMX19_04972 at 443.269 kb on - strand, within MPMX19_04972 at 443.269 kb on - strand, within MPMX19_04972 at 443.286 kb on + strand, within MPMX19_04972 at 443.286 kb on + strand, within MPMX19_04972 at 443.286 kb on + strand, within MPMX19_04972 at 443.286 kb on + strand, within MPMX19_04972 at 443.286 kb on + strand, within MPMX19_04972 at 443.286 kb on + strand, within MPMX19_04972 at 443.286 kb on + strand, within MPMX19_04972 at 443.287 kb on - strand, within MPMX19_04972 at 443.287 kb on - strand, within MPMX19_04972 at 443.287 kb on - strand, within MPMX19_04972 at 443.457 kb on + strand, within MPMX19_04972 at 443.457 kb on + strand, within MPMX19_04972 at 443.457 kb on + strand, within MPMX19_04972 at 443.457 kb on + strand, within MPMX19_04972 at 443.457 kb on + strand, within MPMX19_04972 at 443.458 kb on - strand, within MPMX19_04972 at 443.458 kb on - strand, within MPMX19_04972 at 443.458 kb on - strand, within MPMX19_04972 at 443.458 kb on - strand, within MPMX19_04972 at 443.458 kb on - strand, within MPMX19_04972 at 443.458 kb on - strand, within MPMX19_04972 at 443.458 kb on - strand, within MPMX19_04972 at 443.505 kb on - strand, within MPMX19_04972 at 443.505 kb on - strand, within MPMX19_04972 at 443.621 kb on + strand at 443.683 kb on + strand at 443.684 kb on - strand at 443.748 kb on + strand at 443.768 kb on + strand at 443.768 kb on + strand at 443.768 kb on + strand at 443.769 kb on - strand at 443.777 kb on + strand at 443.777 kb on + strand at 444.043 kb on + strand, within MPMX19_04973 at 444.043 kb on + strand, within MPMX19_04973 at 444.043 kb on + strand, within MPMX19_04973 at 444.043 kb on + strand, within MPMX19_04973 at 444.044 kb on - strand, within MPMX19_04973 at 444.044 kb on - strand, within MPMX19_04973 at 444.044 kb on - strand, within MPMX19_04973 at 444.044 kb on - strand, within MPMX19_04973 at 444.044 kb on - strand, within MPMX19_04973 at 444.044 kb on - strand, within MPMX19_04973 at 444.044 kb on - strand, within MPMX19_04973 at 444.044 kb on - strand, within MPMX19_04973 at 444.044 kb on - strand, within MPMX19_04973 at 444.044 kb on - strand, within MPMX19_04973 at 444.044 kb on - strand, within MPMX19_04973 at 444.046 kb on - strand, within MPMX19_04973 at 444.157 kb on + strand at 444.157 kb on + strand at 444.157 kb on + strand at 444.157 kb on + strand at 444.157 kb on + strand at 444.157 kb on + strand at 444.157 kb on + strand at 444.157 kb on + strand at 444.157 kb on + strand at 444.157 kb on + strand at 444.158 kb on - strand at 444.158 kb on - strand at 444.158 kb on - strand at 444.329 kb on - strand, within MPMX19_04974 at 444.329 kb on - strand, within MPMX19_04974 at 444.329 kb on - strand, within MPMX19_04974 at 444.544 kb on + strand, within MPMX19_04974 at 444.545 kb on - strand, within MPMX19_04974 at 444.545 kb on - strand, within MPMX19_04974 at 444.580 kb on + strand, within MPMX19_04974 at 444.580 kb on + strand, within MPMX19_04974 at 444.581 kb on - strand, within MPMX19_04974 at 444.581 kb on - strand, within MPMX19_04974 at 444.581 kb on - strand, within MPMX19_04974 at 444.605 kb on - strand, within MPMX19_04974 at 444.605 kb on - strand, within MPMX19_04974 at 444.605 kb on - strand, within MPMX19_04974 at 444.607 kb on + strand, within MPMX19_04974 at 444.607 kb on + strand, within MPMX19_04974 at 444.608 kb on - strand, within MPMX19_04974 at 444.608 kb on - strand, within MPMX19_04974 at 444.608 kb on - strand, within MPMX19_04974 at 444.608 kb on - strand, within MPMX19_04974 at 444.608 kb on - strand, within MPMX19_04974 at 444.608 kb on - strand, within MPMX19_04974 at 444.608 kb on - strand, within MPMX19_04974 at 444.608 kb on - strand, within MPMX19_04974 at 444.613 kb on + strand, within MPMX19_04974 at 444.614 kb on - strand, within MPMX19_04974 at 444.614 kb on - strand, within MPMX19_04974 at 444.789 kb on + strand, within MPMX19_04974 at 444.789 kb on + strand, within MPMX19_04974 at 444.789 kb on + strand, within MPMX19_04974 at 444.789 kb on + strand, within MPMX19_04974 at 444.789 kb on + strand, within MPMX19_04974 at 444.790 kb on - strand, within MPMX19_04974 at 444.790 kb on - strand, within MPMX19_04974 at 444.790 kb on - strand, within MPMX19_04974 at 445.094 kb on + strand, within MPMX19_04975 at 445.095 kb on - strand, within MPMX19_04975 at 445.095 kb on - strand, within MPMX19_04975 at 445.136 kb on + strand, within MPMX19_04975 at 445.136 kb on + strand, within MPMX19_04975 at 445.136 kb on + strand, within MPMX19_04975 at 445.137 kb on - strand, within MPMX19_04975 at 445.137 kb on - strand, within MPMX19_04975
Per-strain Table
Position Strand Gene LocusTag Fraction NF remove 442,981 - MPMX19_04972 0.44 -0.3 443,049 + MPMX19_04972 0.49 -0.4 443,049 + MPMX19_04972 0.49 -0.9 443,049 + MPMX19_04972 0.49 +0.5 443,049 + MPMX19_04972 0.49 -0.8 443,050 - MPMX19_04972 0.49 +0.4 443,268 + MPMX19_04972 0.66 -0.5 443,268 + MPMX19_04972 0.66 -2.1 443,269 - MPMX19_04972 0.66 +0.4 443,269 - MPMX19_04972 0.66 -0.0 443,286 + MPMX19_04972 0.67 +0.5 443,286 + MPMX19_04972 0.67 -2.1 443,286 + MPMX19_04972 0.67 -1.2 443,286 + MPMX19_04972 0.67 -1.1 443,286 + MPMX19_04972 0.67 -1.5 443,286 + MPMX19_04972 0.67 -1.0 443,286 + MPMX19_04972 0.67 -1.1 443,287 - MPMX19_04972 0.67 -1.0 443,287 - MPMX19_04972 0.67 -0.1 443,287 - MPMX19_04972 0.67 -0.9 443,457 + MPMX19_04972 0.80 +0.5 443,457 + MPMX19_04972 0.80 -0.2 443,457 + MPMX19_04972 0.80 -1.0 443,457 + MPMX19_04972 0.80 +0.1 443,457 + MPMX19_04972 0.80 +0.1 443,458 - MPMX19_04972 0.80 -1.0 443,458 - MPMX19_04972 0.80 -0.2 443,458 - MPMX19_04972 0.80 +1.0 443,458 - MPMX19_04972 0.80 +0.4 443,458 - MPMX19_04972 0.80 +0.1 443,458 - MPMX19_04972 0.80 -1.2 443,458 - MPMX19_04972 0.80 -1.1 443,505 - MPMX19_04972 0.84 -0.6 443,505 - MPMX19_04972 0.84 +0.7 443,621 + -1.0 443,683 + +0.1 443,684 - -0.8 443,748 + -0.6 443,768 + -1.6 443,768 + -2.6 443,768 + -1.1 443,769 - +0.7 443,777 + -0.2 443,777 + -0.3 444,043 + MPMX19_04973 0.71 -0.4 444,043 + MPMX19_04973 0.71 -0.8 444,043 + MPMX19_04973 0.71 +0.7 444,043 + MPMX19_04973 0.71 -1.4 444,044 - MPMX19_04973 0.71 -0.4 444,044 - MPMX19_04973 0.71 +0.7 444,044 - MPMX19_04973 0.71 -1.1 444,044 - MPMX19_04973 0.71 -0.0 444,044 - MPMX19_04973 0.71 -1.6 444,044 - MPMX19_04973 0.71 -0.3 444,044 - MPMX19_04973 0.71 +1.4 444,044 - MPMX19_04973 0.71 +0.4 444,044 - MPMX19_04973 0.71 -0.3 444,044 - MPMX19_04973 0.71 -0.1 444,044 - MPMX19_04973 0.71 +0.3 444,046 - MPMX19_04973 0.71 -0.8 444,157 + +0.1 444,157 + -0.3 444,157 + +0.4 444,157 + -1.3 444,157 + -0.3 444,157 + +0.4 444,157 + -0.3 444,157 + -0.9 444,157 + +3.5 444,157 + -0.6 444,158 - -0.1 444,158 - -2.2 444,158 - +1.4 444,329 - MPMX19_04974 0.23 -2.0 444,329 - MPMX19_04974 0.23 -0.4 444,329 - MPMX19_04974 0.23 -0.1 444,544 + MPMX19_04974 0.53 +1.7 444,545 - MPMX19_04974 0.53 -1.3 444,545 - MPMX19_04974 0.53 -2.1 444,580 + MPMX19_04974 0.58 +0.4 444,580 + MPMX19_04974 0.58 +0.4 444,581 - MPMX19_04974 0.58 -0.9 444,581 - MPMX19_04974 0.58 +1.0 444,581 - MPMX19_04974 0.58 -0.9 444,605 - MPMX19_04974 0.62 +0.4 444,605 - MPMX19_04974 0.62 -1.0 444,605 - MPMX19_04974 0.62 -0.3 444,607 + MPMX19_04974 0.62 -1.8 444,607 + MPMX19_04974 0.62 -0.1 444,608 - MPMX19_04974 0.62 -1.0 444,608 - MPMX19_04974 0.62 +2.0 444,608 - MPMX19_04974 0.62 -1.0 444,608 - MPMX19_04974 0.62 -0.6 444,608 - MPMX19_04974 0.62 +1.4 444,608 - MPMX19_04974 0.62 -1.2 444,608 - MPMX19_04974 0.62 -0.7 444,608 - MPMX19_04974 0.62 -0.9 444,613 + MPMX19_04974 0.63 -0.9 444,614 - MPMX19_04974 0.63 -1.3 444,614 - MPMX19_04974 0.63 +0.4 444,789 + MPMX19_04974 0.88 -1.0 444,789 + MPMX19_04974 0.88 -0.6 444,789 + MPMX19_04974 0.88 +0.7 444,789 + MPMX19_04974 0.88 -1.9 444,789 + MPMX19_04974 0.88 -0.5 444,790 - MPMX19_04974 0.88 -0.8 444,790 - MPMX19_04974 0.88 +0.5 444,790 - MPMX19_04974 0.88 -0.1 445,094 + MPMX19_04975 0.47 -0.9 445,095 - MPMX19_04975 0.47 +0.2 445,095 - MPMX19_04975 0.47 -1.3 445,136 + MPMX19_04975 0.55 -0.6 445,136 + MPMX19_04975 0.55 -0.9 445,136 + MPMX19_04975 0.55 -0.3 445,137 - MPMX19_04975 0.55 -0.8 445,137 - MPMX19_04975 0.55 -2.9
Or see this region's nucleotide sequence