Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_04968

Experiment: NF

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX19_04967 and MPMX19_04968 are separated by 88 nucleotidesMPMX19_04968 and MPMX19_04969 are separated by 64 nucleotides MPMX19_04967: MPMX19_04967 - ADP-heptose--LPS heptosyltransferase 2, at 432,489 to 433,499 _04967 MPMX19_04968: MPMX19_04968 - hypothetical protein, at 433,588 to 434,139 _04968 MPMX19_04969: MPMX19_04969 - Glutamine-dependent NAD(+) synthetase, at 434,204 to 436,249 _04969 Position (kb) 433 434 435Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 433.436 kb on + strandat 433.483 kb on + strandat 433.606 kb on + strandat 433.606 kb on + strandat 433.606 kb on + strandat 433.606 kb on + strandat 433.606 kb on + strandat 433.606 kb on + strandat 433.606 kb on + strandat 433.607 kb on - strandat 433.607 kb on - strandat 433.607 kb on - strandat 433.607 kb on - strandat 433.607 kb on - strandat 433.607 kb on - strandat 433.607 kb on - strandat 433.607 kb on - strandat 433.677 kb on + strand, within MPMX19_04968at 433.678 kb on - strand, within MPMX19_04968at 433.678 kb on - strand, within MPMX19_04968at 433.714 kb on + strand, within MPMX19_04968at 433.714 kb on + strand, within MPMX19_04968at 433.715 kb on - strand, within MPMX19_04968at 434.409 kb on + strand, within MPMX19_04969at 434.409 kb on + strand, within MPMX19_04969at 434.409 kb on + strand, within MPMX19_04969at 434.410 kb on - strand, within MPMX19_04969at 434.526 kb on + strand, within MPMX19_04969at 434.526 kb on + strand, within MPMX19_04969at 434.526 kb on + strand, within MPMX19_04969at 434.526 kb on + strand, within MPMX19_04969at 434.526 kb on + strand, within MPMX19_04969at 434.527 kb on - strand, within MPMX19_04969at 434.527 kb on - strand, within MPMX19_04969at 434.527 kb on - strand, within MPMX19_04969at 434.527 kb on - strand, within MPMX19_04969at 434.527 kb on - strand, within MPMX19_04969at 434.527 kb on - strand, within MPMX19_04969at 434.527 kb on - strand, within MPMX19_04969at 434.527 kb on - strand, within MPMX19_04969at 434.536 kb on + strand, within MPMX19_04969at 434.537 kb on - strand, within MPMX19_04969at 434.537 kb on - strand, within MPMX19_04969at 434.657 kb on + strand, within MPMX19_04969at 434.742 kb on + strand, within MPMX19_04969at 434.742 kb on + strand, within MPMX19_04969at 434.742 kb on + strand, within MPMX19_04969at 434.742 kb on + strand, within MPMX19_04969at 434.742 kb on + strand, within MPMX19_04969at 434.742 kb on + strand, within MPMX19_04969at 434.743 kb on - strand, within MPMX19_04969at 434.743 kb on - strand, within MPMX19_04969at 434.743 kb on - strand, within MPMX19_04969at 434.743 kb on - strand, within MPMX19_04969at 434.743 kb on - strand, within MPMX19_04969at 434.743 kb on - strand, within MPMX19_04969at 434.743 kb on - strand, within MPMX19_04969at 434.743 kb on - strand, within MPMX19_04969at 434.743 kb on - strand, within MPMX19_04969at 434.769 kb on + strand, within MPMX19_04969at 434.769 kb on + strand, within MPMX19_04969at 434.769 kb on + strand, within MPMX19_04969at 434.769 kb on + strand, within MPMX19_04969at 434.769 kb on + strand, within MPMX19_04969at 434.769 kb on + strand, within MPMX19_04969at 434.769 kb on + strand, within MPMX19_04969at 434.769 kb on + strand, within MPMX19_04969at 434.769 kb on + strand, within MPMX19_04969at 434.770 kb on - strand, within MPMX19_04969at 434.770 kb on - strand, within MPMX19_04969at 434.770 kb on - strand, within MPMX19_04969at 434.853 kb on + strand, within MPMX19_04969at 434.853 kb on + strand, within MPMX19_04969at 434.853 kb on + strand, within MPMX19_04969at 434.853 kb on + strand, within MPMX19_04969at 434.854 kb on - strand, within MPMX19_04969at 434.854 kb on - strand, within MPMX19_04969at 434.897 kb on + strand, within MPMX19_04969at 434.898 kb on + strand, within MPMX19_04969at 434.898 kb on + strand, within MPMX19_04969at 434.898 kb on + strand, within MPMX19_04969at 434.898 kb on + strand, within MPMX19_04969at 434.898 kb on + strand, within MPMX19_04969at 434.898 kb on + strand, within MPMX19_04969at 434.898 kb on + strand, within MPMX19_04969at 434.898 kb on + strand, within MPMX19_04969at 434.898 kb on + strand, within MPMX19_04969at 434.898 kb on + strand, within MPMX19_04969at 434.898 kb on + strand, within MPMX19_04969at 434.898 kb on + strand, within MPMX19_04969at 434.898 kb on + strand, within MPMX19_04969at 434.899 kb on - strand, within MPMX19_04969at 434.899 kb on - strand, within MPMX19_04969at 434.899 kb on - strand, within MPMX19_04969at 434.899 kb on - strand, within MPMX19_04969at 434.899 kb on - strand, within MPMX19_04969at 434.899 kb on - strand, within MPMX19_04969at 434.899 kb on - strand, within MPMX19_04969at 434.899 kb on - strand, within MPMX19_04969at 434.899 kb on - strand, within MPMX19_04969at 434.899 kb on - strand, within MPMX19_04969at 434.899 kb on - strand, within MPMX19_04969at 434.900 kb on + strand, within MPMX19_04969at 434.900 kb on + strand, within MPMX19_04969at 434.901 kb on - strand, within MPMX19_04969at 434.901 kb on - strand, within MPMX19_04969at 434.919 kb on + strand, within MPMX19_04969at 434.920 kb on - strand, within MPMX19_04969at 434.920 kb on - strand, within MPMX19_04969at 434.920 kb on - strand, within MPMX19_04969at 435.097 kb on + strand, within MPMX19_04969at 435.098 kb on - strand, within MPMX19_04969

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction NF
remove
433,436 + -0.6
433,483 + +1.1
433,606 + -2.0
433,606 + -2.5
433,606 + -0.4
433,606 + +0.5
433,606 + +0.5
433,606 + -1.2
433,606 + +0.3
433,607 - -0.3
433,607 - -0.8
433,607 - -0.7
433,607 - -0.4
433,607 - +0.1
433,607 - -2.2
433,607 - -0.8
433,607 - -1.0
433,677 + MPMX19_04968 0.16 -1.1
433,678 - MPMX19_04968 0.16 -3.0
433,678 - MPMX19_04968 0.16 -0.6
433,714 + MPMX19_04968 0.23 -0.6
433,714 + MPMX19_04968 0.23 -1.1
433,715 - MPMX19_04968 0.23 -0.8
434,409 + MPMX19_04969 0.10 -0.9
434,409 + MPMX19_04969 0.10 -1.2
434,409 + MPMX19_04969 0.10 -1.0
434,410 - MPMX19_04969 0.10 +0.7
434,526 + MPMX19_04969 0.16 -0.9
434,526 + MPMX19_04969 0.16 -1.3
434,526 + MPMX19_04969 0.16 -0.5
434,526 + MPMX19_04969 0.16 -0.4
434,526 + MPMX19_04969 0.16 -0.5
434,527 - MPMX19_04969 0.16 -1.9
434,527 - MPMX19_04969 0.16 -0.3
434,527 - MPMX19_04969 0.16 -2.1
434,527 - MPMX19_04969 0.16 -1.6
434,527 - MPMX19_04969 0.16 +0.8
434,527 - MPMX19_04969 0.16 -2.0
434,527 - MPMX19_04969 0.16 +0.2
434,527 - MPMX19_04969 0.16 -1.3
434,536 + MPMX19_04969 0.16 +0.1
434,537 - MPMX19_04969 0.16 -1.6
434,537 - MPMX19_04969 0.16 -0.1
434,657 + MPMX19_04969 0.22 -0.4
434,742 + MPMX19_04969 0.26 -0.9
434,742 + MPMX19_04969 0.26 -0.7
434,742 + MPMX19_04969 0.26 -1.0
434,742 + MPMX19_04969 0.26 +1.3
434,742 + MPMX19_04969 0.26 -0.2
434,742 + MPMX19_04969 0.26 -0.4
434,743 - MPMX19_04969 0.26 +2.3
434,743 - MPMX19_04969 0.26 -0.8
434,743 - MPMX19_04969 0.26 +0.5
434,743 - MPMX19_04969 0.26 -0.6
434,743 - MPMX19_04969 0.26 -0.3
434,743 - MPMX19_04969 0.26 -1.9
434,743 - MPMX19_04969 0.26 -2.0
434,743 - MPMX19_04969 0.26 -1.9
434,743 - MPMX19_04969 0.26 +0.3
434,769 + MPMX19_04969 0.28 -1.9
434,769 + MPMX19_04969 0.28 -0.9
434,769 + MPMX19_04969 0.28 -0.5
434,769 + MPMX19_04969 0.28 -0.6
434,769 + MPMX19_04969 0.28 -0.1
434,769 + MPMX19_04969 0.28 -0.3
434,769 + MPMX19_04969 0.28 +0.6
434,769 + MPMX19_04969 0.28 -1.3
434,769 + MPMX19_04969 0.28 -1.0
434,770 - MPMX19_04969 0.28 -0.6
434,770 - MPMX19_04969 0.28 -1.4
434,770 - MPMX19_04969 0.28 -0.3
434,853 + MPMX19_04969 0.32 -1.5
434,853 + MPMX19_04969 0.32 -0.3
434,853 + MPMX19_04969 0.32 -0.6
434,853 + MPMX19_04969 0.32 -0.5
434,854 - MPMX19_04969 0.32 +0.6
434,854 - MPMX19_04969 0.32 +0.1
434,897 + MPMX19_04969 0.34 -0.3
434,898 + MPMX19_04969 0.34 +1.3
434,898 + MPMX19_04969 0.34 +0.4
434,898 + MPMX19_04969 0.34 +0.2
434,898 + MPMX19_04969 0.34 -0.4
434,898 + MPMX19_04969 0.34 +1.0
434,898 + MPMX19_04969 0.34 -1.2
434,898 + MPMX19_04969 0.34 -0.4
434,898 + MPMX19_04969 0.34 +0.0
434,898 + MPMX19_04969 0.34 -0.7
434,898 + MPMX19_04969 0.34 -1.1
434,898 + MPMX19_04969 0.34 +1.3
434,898 + MPMX19_04969 0.34 +0.7
434,898 + MPMX19_04969 0.34 -0.9
434,899 - MPMX19_04969 0.34 -0.5
434,899 - MPMX19_04969 0.34 -0.1
434,899 - MPMX19_04969 0.34 +0.4
434,899 - MPMX19_04969 0.34 -0.1
434,899 - MPMX19_04969 0.34 -0.9
434,899 - MPMX19_04969 0.34 -1.1
434,899 - MPMX19_04969 0.34 -1.2
434,899 - MPMX19_04969 0.34 -0.4
434,899 - MPMX19_04969 0.34 -0.3
434,899 - MPMX19_04969 0.34 -0.4
434,899 - MPMX19_04969 0.34 -1.6
434,900 + MPMX19_04969 0.34 -0.0
434,900 + MPMX19_04969 0.34 -0.0
434,901 - MPMX19_04969 0.34 -1.1
434,901 - MPMX19_04969 0.34 +0.1
434,919 + MPMX19_04969 0.35 +0.0
434,920 - MPMX19_04969 0.35 +1.0
434,920 - MPMX19_04969 0.35 -0.5
434,920 - MPMX19_04969 0.35 -0.2
435,097 + MPMX19_04969 0.44 -1.3
435,098 - MPMX19_04969 0.44 +0.7

Or see this region's nucleotide sequence