Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_04950

Experiment: NF

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_04949 and MPMX19_04950 are separated by 226 nucleotidesMPMX19_04950 and MPMX19_04951 overlap by 1 nucleotides MPMX19_04949: MPMX19_04949 - Leu/Ile/Val-binding protein, at 412,351 to 413,676 _04949 MPMX19_04950: MPMX19_04950 - High-affinity branched-chain amino acid transport system permease protein LivH, at 413,903 to 414,769 _04950 MPMX19_04951: MPMX19_04951 - hypothetical protein, at 414,769 to 415,785 _04951 Position (kb) 413 414 415Strain fitness (log2 ratio) -3 -2 -1 0 1at 413.156 kb on - strand, within MPMX19_04949at 413.188 kb on + strand, within MPMX19_04949at 413.188 kb on + strand, within MPMX19_04949at 413.188 kb on + strand, within MPMX19_04949at 413.188 kb on + strand, within MPMX19_04949at 413.188 kb on + strand, within MPMX19_04949at 413.189 kb on - strand, within MPMX19_04949at 413.189 kb on - strand, within MPMX19_04949at 413.189 kb on - strand, within MPMX19_04949at 413.189 kb on - strand, within MPMX19_04949at 413.189 kb on - strand, within MPMX19_04949at 413.189 kb on - strand, within MPMX19_04949at 413.602 kb on + strandat 413.602 kb on + strandat 413.602 kb on + strandat 413.602 kb on + strandat 413.603 kb on - strandat 413.603 kb on - strandat 413.603 kb on - strandat 413.603 kb on - strandat 413.705 kb on + strandat 413.759 kb on + strandat 413.759 kb on + strandat 413.760 kb on - strandat 413.960 kb on + strandat 413.961 kb on - strandat 413.961 kb on - strandat 413.961 kb on - strandat 413.961 kb on - strandat 413.961 kb on - strandat 413.961 kb on - strandat 414.050 kb on + strand, within MPMX19_04950at 414.050 kb on + strand, within MPMX19_04950at 414.050 kb on + strand, within MPMX19_04950at 414.050 kb on + strand, within MPMX19_04950at 414.050 kb on + strand, within MPMX19_04950at 414.050 kb on + strand, within MPMX19_04950at 414.050 kb on + strand, within MPMX19_04950at 414.050 kb on + strand, within MPMX19_04950at 414.050 kb on + strand, within MPMX19_04950at 414.050 kb on + strand, within MPMX19_04950at 414.051 kb on - strand, within MPMX19_04950at 414.051 kb on - strand, within MPMX19_04950at 414.051 kb on - strand, within MPMX19_04950at 414.051 kb on - strand, within MPMX19_04950at 414.051 kb on - strand, within MPMX19_04950at 414.051 kb on - strand, within MPMX19_04950at 414.051 kb on - strand, within MPMX19_04950at 414.051 kb on - strand, within MPMX19_04950at 414.051 kb on - strand, within MPMX19_04950at 414.051 kb on - strand, within MPMX19_04950at 414.051 kb on - strand, within MPMX19_04950at 414.051 kb on - strand, within MPMX19_04950at 414.051 kb on - strand, within MPMX19_04950at 414.051 kb on - strand, within MPMX19_04950at 414.051 kb on - strand, within MPMX19_04950at 414.051 kb on - strand, within MPMX19_04950at 414.146 kb on + strand, within MPMX19_04950at 414.147 kb on - strand, within MPMX19_04950at 414.692 kb on + strandat 414.795 kb on + strandat 414.795 kb on + strandat 414.795 kb on + strandat 414.795 kb on + strandat 414.795 kb on + strandat 414.796 kb on - strandat 414.796 kb on - strandat 414.796 kb on - strandat 414.796 kb on - strandat 414.796 kb on - strandat 414.934 kb on + strand, within MPMX19_04951at 414.935 kb on - strand, within MPMX19_04951at 414.970 kb on + strand, within MPMX19_04951at 414.971 kb on - strand, within MPMX19_04951at 414.985 kb on + strand, within MPMX19_04951at 414.985 kb on + strand, within MPMX19_04951at 414.985 kb on + strand, within MPMX19_04951at 414.985 kb on + strand, within MPMX19_04951at 414.986 kb on - strand, within MPMX19_04951at 414.986 kb on - strand, within MPMX19_04951at 414.986 kb on - strand, within MPMX19_04951at 415.111 kb on + strand, within MPMX19_04951at 415.112 kb on - strand, within MPMX19_04951at 415.112 kb on - strand, within MPMX19_04951at 415.112 kb on - strand, within MPMX19_04951at 415.198 kb on + strand, within MPMX19_04951at 415.198 kb on + strand, within MPMX19_04951at 415.198 kb on + strand, within MPMX19_04951at 415.199 kb on - strand, within MPMX19_04951at 415.255 kb on + strand, within MPMX19_04951at 415.255 kb on + strand, within MPMX19_04951at 415.256 kb on - strand, within MPMX19_04951at 415.256 kb on - strand, within MPMX19_04951at 415.258 kb on + strand, within MPMX19_04951at 415.258 kb on + strand, within MPMX19_04951at 415.258 kb on + strand, within MPMX19_04951at 415.258 kb on + strand, within MPMX19_04951at 415.258 kb on + strand, within MPMX19_04951at 415.258 kb on + strand, within MPMX19_04951at 415.258 kb on + strand, within MPMX19_04951at 415.258 kb on + strand, within MPMX19_04951at 415.258 kb on + strand, within MPMX19_04951at 415.258 kb on + strand, within MPMX19_04951at 415.258 kb on + strand, within MPMX19_04951at 415.258 kb on + strand, within MPMX19_04951at 415.258 kb on + strand, within MPMX19_04951at 415.259 kb on - strand, within MPMX19_04951at 415.259 kb on - strand, within MPMX19_04951at 415.259 kb on - strand, within MPMX19_04951at 415.259 kb on - strand, within MPMX19_04951at 415.259 kb on - strand, within MPMX19_04951at 415.259 kb on - strand, within MPMX19_04951at 415.259 kb on - strand, within MPMX19_04951at 415.261 kb on + strand, within MPMX19_04951at 415.261 kb on + strand, within MPMX19_04951at 415.261 kb on + strand, within MPMX19_04951at 415.261 kb on + strand, within MPMX19_04951at 415.261 kb on + strand, within MPMX19_04951at 415.261 kb on + strand, within MPMX19_04951at 415.261 kb on + strand, within MPMX19_04951at 415.262 kb on - strand, within MPMX19_04951at 415.262 kb on - strand, within MPMX19_04951at 415.262 kb on - strand, within MPMX19_04951at 415.262 kb on - strand, within MPMX19_04951at 415.262 kb on - strand, within MPMX19_04951at 415.262 kb on - strand, within MPMX19_04951at 415.262 kb on - strand, within MPMX19_04951at 415.330 kb on + strand, within MPMX19_04951at 415.330 kb on + strand, within MPMX19_04951at 415.331 kb on - strand, within MPMX19_04951at 415.331 kb on - strand, within MPMX19_04951at 415.333 kb on + strand, within MPMX19_04951at 415.334 kb on - strand, within MPMX19_04951at 415.447 kb on - strand, within MPMX19_04951at 415.453 kb on + strand, within MPMX19_04951at 415.600 kb on + strand, within MPMX19_04951at 415.601 kb on - strand, within MPMX19_04951at 415.601 kb on - strand, within MPMX19_04951at 415.651 kb on + strand, within MPMX19_04951at 415.651 kb on + strand, within MPMX19_04951at 415.652 kb on - strand, within MPMX19_04951at 415.652 kb on - strand, within MPMX19_04951at 415.652 kb on - strand, within MPMX19_04951at 415.652 kb on - strand, within MPMX19_04951at 415.652 kb on - strand, within MPMX19_04951at 415.652 kb on - strand, within MPMX19_04951

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Per-strain Table

Position Strand Gene LocusTag Fraction NF
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413,156 - MPMX19_04949 0.61 +0.8
413,188 + MPMX19_04949 0.63 -1.9
413,188 + MPMX19_04949 0.63 -1.9
413,188 + MPMX19_04949 0.63 -1.6
413,188 + MPMX19_04949 0.63 -1.1
413,188 + MPMX19_04949 0.63 -2.1
413,189 - MPMX19_04949 0.63 -0.2
413,189 - MPMX19_04949 0.63 -0.1
413,189 - MPMX19_04949 0.63 +0.2
413,189 - MPMX19_04949 0.63 +0.2
413,189 - MPMX19_04949 0.63 -0.9
413,189 - MPMX19_04949 0.63 -0.8
413,602 + +0.2
413,602 + +0.9
413,602 + +0.7
413,602 + -0.2
413,603 - -1.2
413,603 - -0.4
413,603 - -0.8
413,603 - -1.6
413,705 + -2.4
413,759 + -0.8
413,759 + -1.5
413,760 - -1.7
413,960 + -1.5
413,961 - +0.6
413,961 - +0.7
413,961 - -0.5
413,961 - -0.4
413,961 - -0.6
413,961 - -0.5
414,050 + MPMX19_04950 0.17 -1.3
414,050 + MPMX19_04950 0.17 -0.9
414,050 + MPMX19_04950 0.17 -1.7
414,050 + MPMX19_04950 0.17 -0.6
414,050 + MPMX19_04950 0.17 -0.1
414,050 + MPMX19_04950 0.17 -1.0
414,050 + MPMX19_04950 0.17 -0.4
414,050 + MPMX19_04950 0.17 -0.0
414,050 + MPMX19_04950 0.17 -0.9
414,050 + MPMX19_04950 0.17 -1.8
414,051 - MPMX19_04950 0.17 +0.3
414,051 - MPMX19_04950 0.17 -1.3
414,051 - MPMX19_04950 0.17 -0.6
414,051 - MPMX19_04950 0.17 -1.9
414,051 - MPMX19_04950 0.17 -2.7
414,051 - MPMX19_04950 0.17 -2.2
414,051 - MPMX19_04950 0.17 -0.6
414,051 - MPMX19_04950 0.17 -0.7
414,051 - MPMX19_04950 0.17 -1.6
414,051 - MPMX19_04950 0.17 -1.8
414,051 - MPMX19_04950 0.17 -1.1
414,051 - MPMX19_04950 0.17 -0.0
414,051 - MPMX19_04950 0.17 +0.0
414,051 - MPMX19_04950 0.17 -0.7
414,051 - MPMX19_04950 0.17 -0.6
414,051 - MPMX19_04950 0.17 -2.2
414,146 + MPMX19_04950 0.28 -1.0
414,147 - MPMX19_04950 0.28 -1.3
414,692 + -2.1
414,795 + -1.5
414,795 + -0.6
414,795 + -0.6
414,795 + -0.3
414,795 + -0.0
414,796 - +1.3
414,796 - -0.9
414,796 - -1.5
414,796 - -0.4
414,796 - -0.2
414,934 + MPMX19_04951 0.16 +0.4
414,935 - MPMX19_04951 0.16 +0.7
414,970 + MPMX19_04951 0.20 -0.6
414,971 - MPMX19_04951 0.20 -0.9
414,985 + MPMX19_04951 0.21 -0.9
414,985 + MPMX19_04951 0.21 -0.9
414,985 + MPMX19_04951 0.21 -0.0
414,985 + MPMX19_04951 0.21 -1.4
414,986 - MPMX19_04951 0.21 -1.3
414,986 - MPMX19_04951 0.21 -0.6
414,986 - MPMX19_04951 0.21 -1.3
415,111 + MPMX19_04951 0.34 -0.3
415,112 - MPMX19_04951 0.34 +0.4
415,112 - MPMX19_04951 0.34 -1.3
415,112 - MPMX19_04951 0.34 -2.9
415,198 + MPMX19_04951 0.42 +0.3
415,198 + MPMX19_04951 0.42 -1.8
415,198 + MPMX19_04951 0.42 -0.3
415,199 - MPMX19_04951 0.42 -0.0
415,255 + MPMX19_04951 0.48 -0.4
415,255 + MPMX19_04951 0.48 +0.6
415,256 - MPMX19_04951 0.48 -0.6
415,256 - MPMX19_04951 0.48 -1.5
415,258 + MPMX19_04951 0.48 +0.5
415,258 + MPMX19_04951 0.48 -1.4
415,258 + MPMX19_04951 0.48 -0.2
415,258 + MPMX19_04951 0.48 -0.7
415,258 + MPMX19_04951 0.48 -2.8
415,258 + MPMX19_04951 0.48 +0.6
415,258 + MPMX19_04951 0.48 -0.8
415,258 + MPMX19_04951 0.48 -1.1
415,258 + MPMX19_04951 0.48 -0.0
415,258 + MPMX19_04951 0.48 -1.5
415,258 + MPMX19_04951 0.48 +0.4
415,258 + MPMX19_04951 0.48 -0.0
415,258 + MPMX19_04951 0.48 +0.5
415,259 - MPMX19_04951 0.48 -1.1
415,259 - MPMX19_04951 0.48 +0.3
415,259 - MPMX19_04951 0.48 +0.0
415,259 - MPMX19_04951 0.48 -0.8
415,259 - MPMX19_04951 0.48 +0.7
415,259 - MPMX19_04951 0.48 -1.9
415,259 - MPMX19_04951 0.48 -2.5
415,261 + MPMX19_04951 0.48 +0.5
415,261 + MPMX19_04951 0.48 +0.2
415,261 + MPMX19_04951 0.48 -0.3
415,261 + MPMX19_04951 0.48 +1.5
415,261 + MPMX19_04951 0.48 +0.4
415,261 + MPMX19_04951 0.48 -2.3
415,261 + MPMX19_04951 0.48 -0.9
415,262 - MPMX19_04951 0.48 +0.4
415,262 - MPMX19_04951 0.48 -0.3
415,262 - MPMX19_04951 0.48 +0.9
415,262 - MPMX19_04951 0.48 -0.5
415,262 - MPMX19_04951 0.48 -0.6
415,262 - MPMX19_04951 0.48 -1.8
415,262 - MPMX19_04951 0.48 -2.3
415,330 + MPMX19_04951 0.55 +0.2
415,330 + MPMX19_04951 0.55 -0.6
415,331 - MPMX19_04951 0.55 -0.8
415,331 - MPMX19_04951 0.55 +1.4
415,333 + MPMX19_04951 0.55 -0.5
415,334 - MPMX19_04951 0.56 +1.0
415,447 - MPMX19_04951 0.67 -1.2
415,453 + MPMX19_04951 0.67 +0.6
415,600 + MPMX19_04951 0.82 +0.5
415,601 - MPMX19_04951 0.82 -1.5
415,601 - MPMX19_04951 0.82 -0.5
415,651 + MPMX19_04951 0.87 +0.1
415,651 + MPMX19_04951 0.87 -0.0
415,652 - MPMX19_04951 0.87 -0.2
415,652 - MPMX19_04951 0.87 -1.0
415,652 - MPMX19_04951 0.87 -0.9
415,652 - MPMX19_04951 0.87 -0.6
415,652 - MPMX19_04951 0.87 -0.1
415,652 - MPMX19_04951 0.87 -1.1

Or see this region's nucleotide sequence