Experiment: NF
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_04941 and MPMX19_04942 are separated by 99 nucleotides MPMX19_04942 and MPMX19_04943 are separated by 4 nucleotides MPMX19_04943 and MPMX19_04944 are separated by 668 nucleotides
MPMX19_04941: MPMX19_04941 - hypothetical protein, at 404,837 to 405,652
_04941
MPMX19_04942: MPMX19_04942 - hypothetical protein, at 405,752 to 406,402
_04942
MPMX19_04943: MPMX19_04943 - hypothetical protein, at 406,407 to 407,639
_04943
MPMX19_04944: MPMX19_04944 - hypothetical protein, at 408,308 to 409,177
_04944
Position (kb) 406
407
408 Strain fitness (log2 ratio) -2
-1
0
1 at 405.480 kb on - strand, within MPMX19_04941 at 405.536 kb on + strand, within MPMX19_04941 at 405.536 kb on + strand, within MPMX19_04941 at 405.536 kb on + strand, within MPMX19_04941 at 405.536 kb on + strand, within MPMX19_04941 at 405.537 kb on - strand, within MPMX19_04941 at 405.537 kb on - strand, within MPMX19_04941 at 405.537 kb on - strand, within MPMX19_04941 at 405.537 kb on - strand, within MPMX19_04941 at 405.653 kb on + strand at 405.653 kb on + strand at 405.653 kb on + strand at 405.654 kb on - strand at 405.654 kb on - strand at 405.833 kb on + strand, within MPMX19_04942 at 405.965 kb on + strand, within MPMX19_04942 at 405.965 kb on + strand, within MPMX19_04942 at 405.965 kb on + strand, within MPMX19_04942 at 405.965 kb on + strand, within MPMX19_04942 at 405.965 kb on + strand, within MPMX19_04942 at 405.965 kb on + strand, within MPMX19_04942 at 405.965 kb on + strand, within MPMX19_04942 at 405.965 kb on + strand, within MPMX19_04942 at 405.965 kb on + strand, within MPMX19_04942 at 405.965 kb on + strand, within MPMX19_04942 at 405.966 kb on - strand, within MPMX19_04942 at 405.966 kb on - strand, within MPMX19_04942 at 405.966 kb on - strand, within MPMX19_04942 at 405.966 kb on - strand, within MPMX19_04942 at 405.966 kb on - strand, within MPMX19_04942 at 405.966 kb on - strand, within MPMX19_04942 at 405.966 kb on - strand, within MPMX19_04942 at 405.966 kb on - strand, within MPMX19_04942 at 405.966 kb on - strand, within MPMX19_04942 at 405.972 kb on + strand, within MPMX19_04942 at 406.014 kb on + strand, within MPMX19_04942 at 406.014 kb on + strand, within MPMX19_04942 at 406.014 kb on + strand, within MPMX19_04942 at 406.015 kb on - strand, within MPMX19_04942 at 406.015 kb on - strand, within MPMX19_04942 at 406.015 kb on - strand, within MPMX19_04942 at 406.015 kb on - strand, within MPMX19_04942 at 406.044 kb on + strand, within MPMX19_04942 at 406.044 kb on + strand, within MPMX19_04942 at 406.044 kb on + strand, within MPMX19_04942 at 406.044 kb on + strand, within MPMX19_04942 at 406.044 kb on + strand, within MPMX19_04942 at 406.045 kb on - strand, within MPMX19_04942 at 406.045 kb on - strand, within MPMX19_04942 at 406.045 kb on - strand, within MPMX19_04942 at 406.045 kb on - strand, within MPMX19_04942 at 406.045 kb on - strand, within MPMX19_04942 at 406.115 kb on + strand, within MPMX19_04942 at 406.115 kb on + strand, within MPMX19_04942 at 406.116 kb on - strand, within MPMX19_04942 at 406.275 kb on - strand, within MPMX19_04942 at 406.408 kb on + strand at 406.408 kb on + strand at 406.409 kb on - strand at 406.409 kb on - strand at 407.663 kb on - strand at 407.663 kb on - strand at 407.663 kb on - strand at 407.663 kb on - strand at 407.663 kb on - strand at 407.743 kb on - strand at 407.920 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NF remove 405,480 - MPMX19_04941 0.79 +0.3 405,536 + MPMX19_04941 0.86 -1.1 405,536 + MPMX19_04941 0.86 -1.2 405,536 + MPMX19_04941 0.86 -0.9 405,536 + MPMX19_04941 0.86 -1.4 405,537 - MPMX19_04941 0.86 -2.3 405,537 - MPMX19_04941 0.86 -1.0 405,537 - MPMX19_04941 0.86 -1.1 405,537 - MPMX19_04941 0.86 +0.1 405,653 + -0.8 405,653 + -0.4 405,653 + -0.5 405,654 - -0.4 405,654 - +0.1 405,833 + MPMX19_04942 0.12 -0.3 405,965 + MPMX19_04942 0.33 -0.9 405,965 + MPMX19_04942 0.33 -0.4 405,965 + MPMX19_04942 0.33 -0.2 405,965 + MPMX19_04942 0.33 -0.3 405,965 + MPMX19_04942 0.33 -1.2 405,965 + MPMX19_04942 0.33 +0.7 405,965 + MPMX19_04942 0.33 +0.1 405,965 + MPMX19_04942 0.33 -1.9 405,965 + MPMX19_04942 0.33 -1.3 405,965 + MPMX19_04942 0.33 -1.0 405,966 - MPMX19_04942 0.33 -1.2 405,966 - MPMX19_04942 0.33 -1.0 405,966 - MPMX19_04942 0.33 +0.1 405,966 - MPMX19_04942 0.33 +1.2 405,966 - MPMX19_04942 0.33 -1.4 405,966 - MPMX19_04942 0.33 -0.5 405,966 - MPMX19_04942 0.33 -0.8 405,966 - MPMX19_04942 0.33 -2.1 405,966 - MPMX19_04942 0.33 -1.0 405,972 + MPMX19_04942 0.34 -0.0 406,014 + MPMX19_04942 0.40 -1.6 406,014 + MPMX19_04942 0.40 -1.1 406,014 + MPMX19_04942 0.40 +0.0 406,015 - MPMX19_04942 0.40 +0.3 406,015 - MPMX19_04942 0.40 -1.4 406,015 - MPMX19_04942 0.40 -0.9 406,015 - MPMX19_04942 0.40 -0.6 406,044 + MPMX19_04942 0.45 +0.7 406,044 + MPMX19_04942 0.45 +0.1 406,044 + MPMX19_04942 0.45 -1.1 406,044 + MPMX19_04942 0.45 -2.7 406,044 + MPMX19_04942 0.45 -1.9 406,045 - MPMX19_04942 0.45 -0.0 406,045 - MPMX19_04942 0.45 -0.4 406,045 - MPMX19_04942 0.45 -0.7 406,045 - MPMX19_04942 0.45 -0.6 406,045 - MPMX19_04942 0.45 +0.7 406,115 + MPMX19_04942 0.56 -0.0 406,115 + MPMX19_04942 0.56 -1.1 406,116 - MPMX19_04942 0.56 -0.5 406,275 - MPMX19_04942 0.80 -0.5 406,408 + -0.2 406,408 + -1.0 406,409 - -0.3 406,409 - -0.3 407,663 - -0.7 407,663 - -1.1 407,663 - -1.1 407,663 - +1.1 407,663 - +0.5 407,743 - +1.7 407,920 - -0.8
Or see this region's nucleotide sequence