Experiment: NF
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_04934 and MPMX19_04935 are separated by 213 nucleotides MPMX19_04935 and MPMX19_04936 are separated by 17 nucleotides
MPMX19_04934: MPMX19_04934 - hypothetical protein, at 395,547 to 396,572
_04934
MPMX19_04935: MPMX19_04935 - Beta-glucosidase A, at 396,786 to 398,114
_04935
MPMX19_04936: MPMX19_04936 - Urocanate hydratase, at 398,132 to 399,814
_04936
Position (kb) 396
397
398
399 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 395.921 kb on + strand, within MPMX19_04934 at 395.921 kb on + strand, within MPMX19_04934 at 396.157 kb on + strand, within MPMX19_04934 at 396.157 kb on + strand, within MPMX19_04934 at 396.157 kb on + strand, within MPMX19_04934 at 396.158 kb on - strand, within MPMX19_04934 at 396.158 kb on - strand, within MPMX19_04934 at 396.388 kb on + strand, within MPMX19_04934 at 396.388 kb on + strand, within MPMX19_04934 at 396.389 kb on - strand, within MPMX19_04934 at 396.389 kb on - strand, within MPMX19_04934 at 396.389 kb on - strand, within MPMX19_04934 at 396.389 kb on - strand, within MPMX19_04934 at 396.389 kb on - strand, within MPMX19_04934 at 396.621 kb on + strand at 396.621 kb on + strand at 396.621 kb on + strand at 396.621 kb on + strand at 396.621 kb on + strand at 396.621 kb on + strand at 396.621 kb on + strand at 396.621 kb on + strand at 396.621 kb on + strand at 396.621 kb on + strand at 396.621 kb on + strand at 396.621 kb on + strand at 396.621 kb on + strand at 396.621 kb on + strand at 396.621 kb on + strand at 396.621 kb on + strand at 396.621 kb on + strand at 396.622 kb on - strand at 396.622 kb on - strand at 396.622 kb on - strand at 396.622 kb on - strand at 396.622 kb on - strand at 396.622 kb on - strand at 396.622 kb on - strand at 396.622 kb on - strand at 396.622 kb on - strand at 396.622 kb on - strand at 396.665 kb on + strand at 396.665 kb on + strand at 396.665 kb on + strand at 396.676 kb on + strand at 396.676 kb on + strand at 396.676 kb on + strand at 396.676 kb on + strand at 396.676 kb on + strand at 396.676 kb on + strand at 396.676 kb on + strand at 396.676 kb on + strand at 396.677 kb on - strand at 396.677 kb on - strand at 396.677 kb on - strand at 396.677 kb on - strand at 396.677 kb on - strand at 396.677 kb on - strand at 396.677 kb on - strand at 396.677 kb on - strand at 396.677 kb on - strand at 396.843 kb on + strand at 396.843 kb on + strand at 396.844 kb on - strand at 396.960 kb on + strand, within MPMX19_04935 at 397.014 kb on + strand, within MPMX19_04935 at 397.089 kb on + strand, within MPMX19_04935 at 397.089 kb on + strand, within MPMX19_04935 at 397.089 kb on + strand, within MPMX19_04935 at 397.089 kb on + strand, within MPMX19_04935 at 397.089 kb on + strand, within MPMX19_04935 at 397.090 kb on - strand, within MPMX19_04935 at 397.146 kb on + strand, within MPMX19_04935 at 397.146 kb on + strand, within MPMX19_04935 at 397.146 kb on + strand, within MPMX19_04935 at 397.146 kb on + strand, within MPMX19_04935 at 397.146 kb on + strand, within MPMX19_04935 at 397.147 kb on - strand, within MPMX19_04935 at 397.224 kb on + strand, within MPMX19_04935 at 397.225 kb on - strand, within MPMX19_04935 at 397.564 kb on - strand, within MPMX19_04935 at 397.564 kb on - strand, within MPMX19_04935 at 397.596 kb on + strand, within MPMX19_04935 at 397.596 kb on + strand, within MPMX19_04935 at 397.596 kb on + strand, within MPMX19_04935 at 397.596 kb on + strand, within MPMX19_04935 at 397.596 kb on + strand, within MPMX19_04935 at 397.596 kb on + strand, within MPMX19_04935 at 397.596 kb on + strand, within MPMX19_04935 at 397.596 kb on + strand, within MPMX19_04935 at 397.596 kb on + strand, within MPMX19_04935 at 397.596 kb on + strand, within MPMX19_04935 at 397.596 kb on + strand, within MPMX19_04935 at 397.596 kb on + strand, within MPMX19_04935 at 397.597 kb on - strand, within MPMX19_04935 at 397.597 kb on - strand, within MPMX19_04935 at 397.597 kb on - strand, within MPMX19_04935 at 397.597 kb on - strand, within MPMX19_04935 at 397.597 kb on - strand, within MPMX19_04935 at 397.597 kb on - strand, within MPMX19_04935 at 397.597 kb on - strand, within MPMX19_04935 at 397.597 kb on - strand, within MPMX19_04935 at 397.597 kb on - strand, within MPMX19_04935 at 397.659 kb on + strand, within MPMX19_04935 at 397.659 kb on + strand, within MPMX19_04935 at 397.671 kb on + strand, within MPMX19_04935 at 397.672 kb on - strand, within MPMX19_04935 at 397.821 kb on + strand, within MPMX19_04935 at 397.821 kb on + strand, within MPMX19_04935 at 397.821 kb on + strand, within MPMX19_04935 at 397.821 kb on + strand, within MPMX19_04935 at 397.821 kb on + strand, within MPMX19_04935 at 397.821 kb on + strand, within MPMX19_04935 at 397.821 kb on + strand, within MPMX19_04935 at 397.821 kb on + strand, within MPMX19_04935 at 397.821 kb on + strand, within MPMX19_04935 at 397.821 kb on + strand, within MPMX19_04935 at 397.821 kb on + strand, within MPMX19_04935 at 397.821 kb on + strand, within MPMX19_04935 at 397.821 kb on + strand, within MPMX19_04935 at 397.821 kb on + strand, within MPMX19_04935 at 397.821 kb on + strand, within MPMX19_04935 at 397.821 kb on + strand, within MPMX19_04935 at 397.821 kb on + strand, within MPMX19_04935 at 397.821 kb on + strand, within MPMX19_04935 at 397.821 kb on + strand, within MPMX19_04935 at 397.822 kb on - strand, within MPMX19_04935 at 397.822 kb on - strand, within MPMX19_04935 at 397.822 kb on - strand, within MPMX19_04935 at 397.822 kb on - strand, within MPMX19_04935 at 397.822 kb on - strand, within MPMX19_04935 at 397.822 kb on - strand, within MPMX19_04935 at 397.822 kb on - strand, within MPMX19_04935 at 397.822 kb on - strand, within MPMX19_04935 at 397.822 kb on - strand, within MPMX19_04935 at 397.822 kb on - strand, within MPMX19_04935 at 397.822 kb on - strand, within MPMX19_04935 at 397.822 kb on - strand, within MPMX19_04935 at 397.822 kb on - strand, within MPMX19_04935 at 397.822 kb on - strand, within MPMX19_04935 at 397.905 kb on + strand, within MPMX19_04935 at 397.906 kb on - strand, within MPMX19_04935 at 397.917 kb on + strand, within MPMX19_04935 at 397.917 kb on + strand, within MPMX19_04935 at 397.917 kb on + strand, within MPMX19_04935 at 397.917 kb on + strand, within MPMX19_04935 at 397.918 kb on - strand, within MPMX19_04935 at 397.918 kb on - strand, within MPMX19_04935 at 397.918 kb on - strand, within MPMX19_04935 at 397.918 kb on - strand, within MPMX19_04935 at 397.918 kb on - strand, within MPMX19_04935 at 397.918 kb on - strand, within MPMX19_04935 at 397.969 kb on - strand, within MPMX19_04935 at 397.969 kb on - strand, within MPMX19_04935 at 397.969 kb on - strand, within MPMX19_04935 at 398.013 kb on + strand at 398.013 kb on + strand at 398.088 kb on + strand at 398.088 kb on + strand at 398.089 kb on - strand at 398.133 kb on + strand at 398.133 kb on + strand at 398.133 kb on + strand at 398.133 kb on + strand at 398.133 kb on + strand at 398.133 kb on + strand at 398.133 kb on + strand at 398.134 kb on - strand at 398.134 kb on - strand at 398.134 kb on - strand at 398.134 kb on - strand at 398.134 kb on - strand at 398.134 kb on - strand at 398.134 kb on - strand at 398.134 kb on - strand at 398.134 kb on - strand at 398.134 kb on - strand at 398.134 kb on - strand at 398.134 kb on - strand at 398.191 kb on - strand at 398.680 kb on + strand, within MPMX19_04936 at 398.680 kb on + strand, within MPMX19_04936 at 398.681 kb on - strand, within MPMX19_04936 at 398.681 kb on - strand, within MPMX19_04936 at 398.681 kb on - strand, within MPMX19_04936 at 398.681 kb on - strand, within MPMX19_04936 at 398.755 kb on + strand, within MPMX19_04936 at 398.757 kb on + strand, within MPMX19_04936 at 398.757 kb on + strand, within MPMX19_04936 at 398.757 kb on + strand, within MPMX19_04936 at 398.757 kb on + strand, within MPMX19_04936 at 398.757 kb on + strand, within MPMX19_04936 at 398.757 kb on + strand, within MPMX19_04936 at 398.757 kb on + strand, within MPMX19_04936 at 398.757 kb on + strand, within MPMX19_04936 at 398.757 kb on + strand, within MPMX19_04936 at 398.757 kb on + strand, within MPMX19_04936 at 398.758 kb on - strand, within MPMX19_04936 at 398.758 kb on - strand, within MPMX19_04936 at 398.758 kb on - strand, within MPMX19_04936 at 398.758 kb on - strand, within MPMX19_04936 at 398.758 kb on - strand, within MPMX19_04936 at 398.758 kb on - strand, within MPMX19_04936 at 398.835 kb on + strand, within MPMX19_04936 at 398.836 kb on - strand, within MPMX19_04936 at 398.982 kb on + strand, within MPMX19_04936 at 398.982 kb on + strand, within MPMX19_04936 at 398.982 kb on + strand, within MPMX19_04936 at 398.983 kb on - strand, within MPMX19_04936
Per-strain Table
Position Strand Gene LocusTag Fraction NF remove 395,921 + MPMX19_04934 0.36 -0.6 395,921 + MPMX19_04934 0.36 -0.1 396,157 + MPMX19_04934 0.59 -1.1 396,157 + MPMX19_04934 0.59 -0.9 396,157 + MPMX19_04934 0.59 -1.6 396,158 - MPMX19_04934 0.60 -0.8 396,158 - MPMX19_04934 0.60 -0.2 396,388 + MPMX19_04934 0.82 -1.5 396,388 + MPMX19_04934 0.82 -0.6 396,389 - MPMX19_04934 0.82 -1.1 396,389 - MPMX19_04934 0.82 +0.3 396,389 - MPMX19_04934 0.82 -0.2 396,389 - MPMX19_04934 0.82 -0.3 396,389 - MPMX19_04934 0.82 -0.1 396,621 + -0.0 396,621 + +0.5 396,621 + -0.4 396,621 + -1.1 396,621 + -1.1 396,621 + -0.9 396,621 + -0.3 396,621 + -0.3 396,621 + +0.5 396,621 + -2.9 396,621 + -1.4 396,621 + -1.2 396,621 + +0.6 396,621 + +1.1 396,621 + +1.2 396,621 + -2.9 396,621 + -1.1 396,622 - -0.5 396,622 - +0.6 396,622 - +0.8 396,622 - -1.0 396,622 - -1.2 396,622 - -0.5 396,622 - -0.4 396,622 - -0.1 396,622 - +1.0 396,622 - -0.5 396,665 + -0.6 396,665 + -1.6 396,665 + -0.8 396,676 + -2.4 396,676 + -1.4 396,676 + -0.3 396,676 + -0.5 396,676 + -0.5 396,676 + -0.6 396,676 + -1.3 396,676 + +0.1 396,677 - -1.2 396,677 - -1.5 396,677 - +0.4 396,677 - -2.1 396,677 - +0.1 396,677 - +0.3 396,677 - +1.7 396,677 - -1.2 396,677 - -0.2 396,843 + +0.1 396,843 + -1.6 396,844 - -0.3 396,960 + MPMX19_04935 0.13 +0.4 397,014 + MPMX19_04935 0.17 +0.1 397,089 + MPMX19_04935 0.23 +0.1 397,089 + MPMX19_04935 0.23 -1.3 397,089 + MPMX19_04935 0.23 -1.8 397,089 + MPMX19_04935 0.23 -1.6 397,089 + MPMX19_04935 0.23 +0.4 397,090 - MPMX19_04935 0.23 +0.5 397,146 + MPMX19_04935 0.27 -1.5 397,146 + MPMX19_04935 0.27 +0.1 397,146 + MPMX19_04935 0.27 -1.9 397,146 + MPMX19_04935 0.27 -0.4 397,146 + MPMX19_04935 0.27 -0.3 397,147 - MPMX19_04935 0.27 -0.1 397,224 + MPMX19_04935 0.33 -1.1 397,225 - MPMX19_04935 0.33 -0.2 397,564 - MPMX19_04935 0.59 -0.3 397,564 - MPMX19_04935 0.59 -0.8 397,596 + MPMX19_04935 0.61 +1.1 397,596 + MPMX19_04935 0.61 +0.5 397,596 + MPMX19_04935 0.61 +0.8 397,596 + MPMX19_04935 0.61 -0.9 397,596 + MPMX19_04935 0.61 +0.1 397,596 + MPMX19_04935 0.61 -0.9 397,596 + MPMX19_04935 0.61 -0.7 397,596 + MPMX19_04935 0.61 -1.8 397,596 + MPMX19_04935 0.61 -0.7 397,596 + MPMX19_04935 0.61 +0.4 397,596 + MPMX19_04935 0.61 -0.4 397,596 + MPMX19_04935 0.61 +0.1 397,597 - MPMX19_04935 0.61 -0.9 397,597 - MPMX19_04935 0.61 -1.7 397,597 - MPMX19_04935 0.61 -0.9 397,597 - MPMX19_04935 0.61 +0.1 397,597 - MPMX19_04935 0.61 -0.3 397,597 - MPMX19_04935 0.61 -0.2 397,597 - MPMX19_04935 0.61 -0.1 397,597 - MPMX19_04935 0.61 -1.1 397,597 - MPMX19_04935 0.61 -0.9 397,659 + MPMX19_04935 0.66 -2.8 397,659 + MPMX19_04935 0.66 +1.2 397,671 + MPMX19_04935 0.67 -2.4 397,672 - MPMX19_04935 0.67 -0.1 397,821 + MPMX19_04935 0.78 -0.2 397,821 + MPMX19_04935 0.78 -0.3 397,821 + MPMX19_04935 0.78 +1.1 397,821 + MPMX19_04935 0.78 +0.6 397,821 + MPMX19_04935 0.78 -1.9 397,821 + MPMX19_04935 0.78 +0.1 397,821 + MPMX19_04935 0.78 -1.0 397,821 + MPMX19_04935 0.78 +0.1 397,821 + MPMX19_04935 0.78 -2.2 397,821 + MPMX19_04935 0.78 +0.1 397,821 + MPMX19_04935 0.78 -0.3 397,821 + MPMX19_04935 0.78 -1.8 397,821 + MPMX19_04935 0.78 -0.5 397,821 + MPMX19_04935 0.78 +1.0 397,821 + MPMX19_04935 0.78 -0.5 397,821 + MPMX19_04935 0.78 -1.3 397,821 + MPMX19_04935 0.78 -1.0 397,821 + MPMX19_04935 0.78 +0.7 397,821 + MPMX19_04935 0.78 +0.5 397,822 - MPMX19_04935 0.78 +0.7 397,822 - MPMX19_04935 0.78 -0.1 397,822 - MPMX19_04935 0.78 +1.2 397,822 - MPMX19_04935 0.78 -2.5 397,822 - MPMX19_04935 0.78 -0.5 397,822 - MPMX19_04935 0.78 +0.0 397,822 - MPMX19_04935 0.78 -0.9 397,822 - MPMX19_04935 0.78 -0.9 397,822 - MPMX19_04935 0.78 -0.4 397,822 - MPMX19_04935 0.78 -0.3 397,822 - MPMX19_04935 0.78 -0.5 397,822 - MPMX19_04935 0.78 -0.2 397,822 - MPMX19_04935 0.78 -0.0 397,822 - MPMX19_04935 0.78 +0.7 397,905 + MPMX19_04935 0.84 -1.7 397,906 - MPMX19_04935 0.84 -0.4 397,917 + MPMX19_04935 0.85 -1.6 397,917 + MPMX19_04935 0.85 -0.3 397,917 + MPMX19_04935 0.85 -0.9 397,917 + MPMX19_04935 0.85 -0.2 397,918 - MPMX19_04935 0.85 -0.0 397,918 - MPMX19_04935 0.85 -0.6 397,918 - MPMX19_04935 0.85 -1.5 397,918 - MPMX19_04935 0.85 -0.5 397,918 - MPMX19_04935 0.85 -2.2 397,918 - MPMX19_04935 0.85 +0.1 397,969 - MPMX19_04935 0.89 -0.9 397,969 - MPMX19_04935 0.89 -0.8 397,969 - MPMX19_04935 0.89 -0.9 398,013 + -1.1 398,013 + -0.3 398,088 + +0.3 398,088 + +0.8 398,089 - -0.8 398,133 + -1.1 398,133 + -0.4 398,133 + -0.4 398,133 + -0.3 398,133 + -0.0 398,133 + -1.5 398,133 + -1.0 398,134 - -0.3 398,134 - +0.4 398,134 - -0.5 398,134 - +0.2 398,134 - -1.6 398,134 - -2.0 398,134 - +0.6 398,134 - +0.1 398,134 - -0.7 398,134 - +0.1 398,134 - -1.3 398,134 - -1.1 398,191 - -0.5 398,680 + MPMX19_04936 0.33 +0.6 398,680 + MPMX19_04936 0.33 -0.2 398,681 - MPMX19_04936 0.33 -1.1 398,681 - MPMX19_04936 0.33 -0.1 398,681 - MPMX19_04936 0.33 -0.5 398,681 - MPMX19_04936 0.33 -0.1 398,755 + MPMX19_04936 0.37 -1.0 398,757 + MPMX19_04936 0.37 -0.9 398,757 + MPMX19_04936 0.37 -1.8 398,757 + MPMX19_04936 0.37 -0.9 398,757 + MPMX19_04936 0.37 +0.2 398,757 + MPMX19_04936 0.37 -0.3 398,757 + MPMX19_04936 0.37 +0.2 398,757 + MPMX19_04936 0.37 +0.4 398,757 + MPMX19_04936 0.37 -0.3 398,757 + MPMX19_04936 0.37 +0.5 398,757 + MPMX19_04936 0.37 +0.5 398,758 - MPMX19_04936 0.37 +0.8 398,758 - MPMX19_04936 0.37 -1.3 398,758 - MPMX19_04936 0.37 +0.1 398,758 - MPMX19_04936 0.37 -0.6 398,758 - MPMX19_04936 0.37 -1.6 398,758 - MPMX19_04936 0.37 +0.7 398,835 + MPMX19_04936 0.42 +0.1 398,836 - MPMX19_04936 0.42 -0.1 398,982 + MPMX19_04936 0.51 +0.5 398,982 + MPMX19_04936 0.51 +0.5 398,982 + MPMX19_04936 0.51 -0.9 398,983 - MPMX19_04936 0.51 -1.5
Or see this region's nucleotide sequence