Experiment: NF
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_04896 and MPMX19_04897 are separated by 155 nucleotides MPMX19_04897 and MPMX19_04898 are separated by 81 nucleotides MPMX19_04898 and MPMX19_04899 are separated by 429 nucleotides
MPMX19_04896: MPMX19_04896 - Outer membrane protein W, at 345,229 to 345,936
_04896
MPMX19_04897: MPMX19_04897 - hypothetical protein, at 346,092 to 346,526
_04897
MPMX19_04898: MPMX19_04898 - Transcriptional regulatory protein LnrK, at 346,608 to 347,261
_04898
MPMX19_04899: MPMX19_04899 - 3-methylmercaptopropionyl-CoA dehydrogenase, at 347,691 to 349,481
_04899
Position (kb) 346
347
348 Strain fitness (log2 ratio) -2
-1
0
1
2 at 345.637 kb on + strand, within MPMX19_04896 at 345.637 kb on + strand, within MPMX19_04896 at 345.637 kb on + strand, within MPMX19_04896 at 345.637 kb on + strand, within MPMX19_04896 at 345.658 kb on + strand, within MPMX19_04896 at 345.658 kb on + strand, within MPMX19_04896 at 345.658 kb on + strand, within MPMX19_04896 at 345.658 kb on + strand, within MPMX19_04896 at 345.658 kb on + strand, within MPMX19_04896 at 345.658 kb on + strand, within MPMX19_04896 at 345.658 kb on + strand, within MPMX19_04896 at 345.658 kb on + strand, within MPMX19_04896 at 345.658 kb on + strand, within MPMX19_04896 at 345.658 kb on + strand, within MPMX19_04896 at 345.658 kb on + strand, within MPMX19_04896 at 345.658 kb on + strand, within MPMX19_04896 at 345.659 kb on - strand, within MPMX19_04896 at 345.659 kb on - strand, within MPMX19_04896 at 345.659 kb on - strand, within MPMX19_04896 at 345.659 kb on - strand, within MPMX19_04896 at 345.659 kb on - strand, within MPMX19_04896 at 345.659 kb on - strand, within MPMX19_04896 at 345.659 kb on - strand, within MPMX19_04896 at 345.659 kb on - strand, within MPMX19_04896 at 345.659 kb on - strand, within MPMX19_04896 at 345.659 kb on - strand, within MPMX19_04896 at 345.659 kb on - strand, within MPMX19_04896 at 345.670 kb on + strand, within MPMX19_04896 at 345.670 kb on + strand, within MPMX19_04896 at 345.671 kb on - strand, within MPMX19_04896 at 345.671 kb on - strand, within MPMX19_04896 at 345.730 kb on + strand, within MPMX19_04896 at 345.730 kb on + strand, within MPMX19_04896 at 345.730 kb on + strand, within MPMX19_04896 at 345.730 kb on + strand, within MPMX19_04896 at 345.730 kb on + strand, within MPMX19_04896 at 345.730 kb on + strand, within MPMX19_04896 at 345.730 kb on + strand, within MPMX19_04896 at 345.730 kb on + strand, within MPMX19_04896 at 345.730 kb on + strand, within MPMX19_04896 at 345.730 kb on + strand, within MPMX19_04896 at 345.730 kb on + strand, within MPMX19_04896 at 345.730 kb on + strand, within MPMX19_04896 at 345.731 kb on - strand, within MPMX19_04896 at 345.731 kb on - strand, within MPMX19_04896 at 345.731 kb on - strand, within MPMX19_04896 at 345.731 kb on - strand, within MPMX19_04896 at 345.934 kb on + strand at 345.934 kb on + strand at 345.934 kb on + strand at 345.934 kb on + strand at 345.934 kb on + strand at 345.934 kb on + strand at 345.934 kb on + strand at 345.934 kb on + strand at 345.935 kb on - strand at 345.935 kb on - strand at 345.935 kb on - strand at 345.935 kb on - strand at 345.935 kb on - strand at 345.935 kb on - strand at 345.935 kb on - strand at 345.935 kb on - strand at 345.935 kb on - strand at 345.935 kb on - strand at 345.935 kb on - strand at 346.061 kb on + strand at 346.061 kb on + strand at 346.061 kb on + strand at 346.061 kb on + strand at 346.061 kb on + strand at 346.061 kb on + strand at 346.061 kb on + strand at 346.061 kb on + strand at 346.061 kb on + strand at 346.061 kb on + strand at 346.061 kb on + strand at 346.061 kb on + strand at 346.061 kb on + strand at 346.061 kb on + strand at 346.062 kb on - strand at 346.062 kb on - strand at 346.062 kb on - strand at 346.062 kb on - strand at 346.062 kb on - strand at 346.062 kb on - strand at 346.888 kb on + strand, within MPMX19_04898 at 346.888 kb on + strand, within MPMX19_04898 at 346.888 kb on + strand, within MPMX19_04898 at 346.888 kb on + strand, within MPMX19_04898 at 346.889 kb on - strand, within MPMX19_04898 at 346.889 kb on - strand, within MPMX19_04898 at 346.889 kb on - strand, within MPMX19_04898 at 346.957 kb on + strand, within MPMX19_04898 at 346.957 kb on + strand, within MPMX19_04898 at 346.957 kb on + strand, within MPMX19_04898 at 346.957 kb on + strand, within MPMX19_04898 at 346.958 kb on - strand, within MPMX19_04898 at 347.116 kb on + strand, within MPMX19_04898 at 347.116 kb on + strand, within MPMX19_04898 at 347.116 kb on + strand, within MPMX19_04898 at 347.116 kb on + strand, within MPMX19_04898 at 347.116 kb on + strand, within MPMX19_04898 at 347.116 kb on + strand, within MPMX19_04898 at 347.117 kb on - strand, within MPMX19_04898 at 347.117 kb on - strand, within MPMX19_04898 at 347.117 kb on - strand, within MPMX19_04898 at 347.187 kb on - strand, within MPMX19_04898 at 347.343 kb on + strand at 347.344 kb on - strand at 347.344 kb on - strand at 347.365 kb on - strand at 347.365 kb on - strand at 347.367 kb on - strand at 347.367 kb on - strand at 347.386 kb on + strand at 347.387 kb on - strand at 347.387 kb on - strand at 347.403 kb on + strand at 347.403 kb on + strand at 347.403 kb on + strand at 347.403 kb on + strand at 347.404 kb on - strand at 347.404 kb on - strand at 347.404 kb on - strand at 347.404 kb on - strand at 347.404 kb on - strand at 347.404 kb on - strand at 347.404 kb on - strand at 347.404 kb on - strand at 347.438 kb on - strand at 347.464 kb on - strand at 347.464 kb on - strand at 347.495 kb on + strand at 347.510 kb on - strand at 347.510 kb on - strand at 347.510 kb on - strand at 347.785 kb on + strand at 347.785 kb on + strand at 347.785 kb on + strand at 347.786 kb on - strand at 347.786 kb on - strand at 347.786 kb on - strand at 347.786 kb on - strand at 347.786 kb on - strand at 347.786 kb on - strand at 347.786 kb on - strand at 347.786 kb on - strand at 347.786 kb on - strand at 347.917 kb on + strand, within MPMX19_04899 at 347.917 kb on + strand, within MPMX19_04899 at 347.917 kb on + strand, within MPMX19_04899 at 347.918 kb on - strand, within MPMX19_04899 at 347.918 kb on - strand, within MPMX19_04899 at 347.918 kb on - strand, within MPMX19_04899 at 347.918 kb on - strand, within MPMX19_04899 at 347.918 kb on - strand, within MPMX19_04899 at 347.918 kb on - strand, within MPMX19_04899 at 348.166 kb on + strand, within MPMX19_04899 at 348.166 kb on + strand, within MPMX19_04899 at 348.166 kb on + strand, within MPMX19_04899 at 348.166 kb on + strand, within MPMX19_04899 at 348.166 kb on + strand, within MPMX19_04899 at 348.166 kb on + strand, within MPMX19_04899 at 348.167 kb on - strand, within MPMX19_04899 at 348.167 kb on - strand, within MPMX19_04899 at 348.167 kb on - strand, within MPMX19_04899 at 348.167 kb on - strand, within MPMX19_04899 at 348.196 kb on + strand, within MPMX19_04899 at 348.196 kb on + strand, within MPMX19_04899 at 348.196 kb on + strand, within MPMX19_04899 at 348.196 kb on + strand, within MPMX19_04899 at 348.196 kb on + strand, within MPMX19_04899 at 348.196 kb on + strand, within MPMX19_04899 at 348.196 kb on + strand, within MPMX19_04899 at 348.196 kb on + strand, within MPMX19_04899 at 348.196 kb on + strand, within MPMX19_04899 at 348.196 kb on + strand, within MPMX19_04899 at 348.196 kb on + strand, within MPMX19_04899 at 348.196 kb on + strand, within MPMX19_04899 at 348.196 kb on + strand, within MPMX19_04899 at 348.197 kb on - strand, within MPMX19_04899 at 348.197 kb on - strand, within MPMX19_04899 at 348.197 kb on - strand, within MPMX19_04899 at 348.197 kb on - strand, within MPMX19_04899 at 348.197 kb on - strand, within MPMX19_04899 at 348.197 kb on - strand, within MPMX19_04899 at 348.197 kb on - strand, within MPMX19_04899 at 348.197 kb on - strand, within MPMX19_04899 at 348.197 kb on - strand, within MPMX19_04899
Per-strain Table
Position Strand Gene LocusTag Fraction NF remove 345,637 + MPMX19_04896 0.58 -2.0 345,637 + MPMX19_04896 0.58 -0.2 345,637 + MPMX19_04896 0.58 -0.4 345,637 + MPMX19_04896 0.58 +0.7 345,658 + MPMX19_04896 0.61 +0.9 345,658 + MPMX19_04896 0.61 -0.7 345,658 + MPMX19_04896 0.61 -1.5 345,658 + MPMX19_04896 0.61 -0.4 345,658 + MPMX19_04896 0.61 -1.3 345,658 + MPMX19_04896 0.61 -0.5 345,658 + MPMX19_04896 0.61 -0.4 345,658 + MPMX19_04896 0.61 +0.1 345,658 + MPMX19_04896 0.61 -0.9 345,658 + MPMX19_04896 0.61 +1.4 345,658 + MPMX19_04896 0.61 -0.7 345,658 + MPMX19_04896 0.61 -1.5 345,659 - MPMX19_04896 0.61 +0.8 345,659 - MPMX19_04896 0.61 -1.1 345,659 - MPMX19_04896 0.61 +1.3 345,659 - MPMX19_04896 0.61 -0.5 345,659 - MPMX19_04896 0.61 +0.3 345,659 - MPMX19_04896 0.61 +1.0 345,659 - MPMX19_04896 0.61 -1.8 345,659 - MPMX19_04896 0.61 +1.2 345,659 - MPMX19_04896 0.61 -0.6 345,659 - MPMX19_04896 0.61 +1.7 345,659 - MPMX19_04896 0.61 -0.3 345,670 + MPMX19_04896 0.62 -1.2 345,670 + MPMX19_04896 0.62 -0.7 345,671 - MPMX19_04896 0.62 +0.7 345,671 - MPMX19_04896 0.62 -0.6 345,730 + MPMX19_04896 0.71 +1.0 345,730 + MPMX19_04896 0.71 -1.2 345,730 + MPMX19_04896 0.71 -0.4 345,730 + MPMX19_04896 0.71 -0.3 345,730 + MPMX19_04896 0.71 +0.6 345,730 + MPMX19_04896 0.71 +0.2 345,730 + MPMX19_04896 0.71 +0.1 345,730 + MPMX19_04896 0.71 -0.3 345,730 + MPMX19_04896 0.71 -0.8 345,730 + MPMX19_04896 0.71 -0.8 345,730 + MPMX19_04896 0.71 +0.4 345,730 + MPMX19_04896 0.71 +0.4 345,731 - MPMX19_04896 0.71 +1.4 345,731 - MPMX19_04896 0.71 -0.6 345,731 - MPMX19_04896 0.71 -0.9 345,731 - MPMX19_04896 0.71 -0.5 345,934 + -1.3 345,934 + -1.5 345,934 + -0.1 345,934 + -0.6 345,934 + +0.3 345,934 + +0.7 345,934 + +1.0 345,934 + +0.2 345,935 - +0.7 345,935 - -0.2 345,935 - -0.3 345,935 - +0.9 345,935 - +0.5 345,935 - -0.0 345,935 - -1.1 345,935 - -0.6 345,935 - -1.6 345,935 - +0.1 345,935 - -0.7 346,061 + -0.5 346,061 + +0.5 346,061 + -0.3 346,061 + -0.1 346,061 + +0.7 346,061 + -1.8 346,061 + +0.2 346,061 + -1.3 346,061 + +0.1 346,061 + -0.9 346,061 + -0.2 346,061 + -0.4 346,061 + -0.6 346,061 + -0.3 346,062 - -0.4 346,062 - -0.4 346,062 - -0.1 346,062 - +0.4 346,062 - +0.7 346,062 - -0.5 346,888 + MPMX19_04898 0.43 +0.7 346,888 + MPMX19_04898 0.43 +1.7 346,888 + MPMX19_04898 0.43 +1.0 346,888 + MPMX19_04898 0.43 +1.7 346,889 - MPMX19_04898 0.43 -0.8 346,889 - MPMX19_04898 0.43 +1.6 346,889 - MPMX19_04898 0.43 -0.5 346,957 + MPMX19_04898 0.53 -1.5 346,957 + MPMX19_04898 0.53 +1.1 346,957 + MPMX19_04898 0.53 -1.3 346,957 + MPMX19_04898 0.53 +0.1 346,958 - MPMX19_04898 0.54 -0.3 347,116 + MPMX19_04898 0.78 +1.1 347,116 + MPMX19_04898 0.78 -0.3 347,116 + MPMX19_04898 0.78 -0.9 347,116 + MPMX19_04898 0.78 +1.5 347,116 + MPMX19_04898 0.78 +1.1 347,116 + MPMX19_04898 0.78 +1.3 347,117 - MPMX19_04898 0.78 +0.4 347,117 - MPMX19_04898 0.78 -0.0 347,117 - MPMX19_04898 0.78 +0.5 347,187 - MPMX19_04898 0.89 -1.9 347,343 + -1.5 347,344 - +1.3 347,344 - +0.1 347,365 - -1.8 347,365 - +0.0 347,367 - -0.8 347,367 - -1.3 347,386 + -1.4 347,387 - -1.2 347,387 - -1.9 347,403 + +0.1 347,403 + -0.3 347,403 + +0.1 347,403 + -0.8 347,404 - -1.3 347,404 - +0.9 347,404 - -0.7 347,404 - -1.6 347,404 - -0.4 347,404 - +0.2 347,404 - -0.8 347,404 - -0.3 347,438 - -1.0 347,464 - -2.0 347,464 - +1.7 347,495 + -0.0 347,510 - +1.1 347,510 - -1.5 347,510 - +0.9 347,785 + -2.2 347,785 + -0.1 347,785 + +0.1 347,786 - -1.1 347,786 - -0.7 347,786 - -0.1 347,786 - +0.3 347,786 - +1.2 347,786 - -0.1 347,786 - -0.2 347,786 - -2.1 347,786 - +2.1 347,917 + MPMX19_04899 0.13 +1.1 347,917 + MPMX19_04899 0.13 -1.9 347,917 + MPMX19_04899 0.13 +0.7 347,918 - MPMX19_04899 0.13 -1.8 347,918 - MPMX19_04899 0.13 -0.5 347,918 - MPMX19_04899 0.13 -1.4 347,918 - MPMX19_04899 0.13 -0.8 347,918 - MPMX19_04899 0.13 -1.3 347,918 - MPMX19_04899 0.13 -0.5 348,166 + MPMX19_04899 0.27 -1.2 348,166 + MPMX19_04899 0.27 -0.5 348,166 + MPMX19_04899 0.27 +0.3 348,166 + MPMX19_04899 0.27 -0.3 348,166 + MPMX19_04899 0.27 -0.8 348,166 + MPMX19_04899 0.27 -0.9 348,167 - MPMX19_04899 0.27 -1.9 348,167 - MPMX19_04899 0.27 -0.7 348,167 - MPMX19_04899 0.27 +1.0 348,167 - MPMX19_04899 0.27 +0.5 348,196 + MPMX19_04899 0.28 +0.6 348,196 + MPMX19_04899 0.28 -0.8 348,196 + MPMX19_04899 0.28 -0.8 348,196 + MPMX19_04899 0.28 -2.0 348,196 + MPMX19_04899 0.28 +0.5 348,196 + MPMX19_04899 0.28 -0.0 348,196 + MPMX19_04899 0.28 +0.2 348,196 + MPMX19_04899 0.28 -2.1 348,196 + MPMX19_04899 0.28 +0.6 348,196 + MPMX19_04899 0.28 +1.1 348,196 + MPMX19_04899 0.28 +0.5 348,196 + MPMX19_04899 0.28 +0.5 348,196 + MPMX19_04899 0.28 -1.6 348,197 - MPMX19_04899 0.28 -0.5 348,197 - MPMX19_04899 0.28 -0.5 348,197 - MPMX19_04899 0.28 -1.5 348,197 - MPMX19_04899 0.28 -0.2 348,197 - MPMX19_04899 0.28 -0.0 348,197 - MPMX19_04899 0.28 +0.7 348,197 - MPMX19_04899 0.28 -1.5 348,197 - MPMX19_04899 0.28 +0.9 348,197 - MPMX19_04899 0.28 -2.5
Or see this region's nucleotide sequence