Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_04879

Experiment: NF

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX19_04878 and MPMX19_04879 are separated by 293 nucleotidesMPMX19_04879 and MPMX19_04880 are separated by 127 nucleotidesMPMX19_04880 and MPMX19_04881 overlap by 4 nucleotides MPMX19_04878: MPMX19_04878 - Agmatine deiminase, at 322,211 to 323,254 _04878 MPMX19_04879: MPMX19_04879 - hypothetical protein, at 323,548 to 323,670 _04879 MPMX19_04880: MPMX19_04880 - Inner membrane ABC transporter permease protein YdcV, at 323,798 to 324,631 _04880 MPMX19_04881: MPMX19_04881 - Putrescine transport system permease protein PotH, at 324,628 to 325,572 _04881 Position (kb) 323 324Strain fitness (log2 ratio) -2 -1 0 1 2at 322.629 kb on + strand, within MPMX19_04878at 322.629 kb on + strand, within MPMX19_04878at 322.629 kb on + strand, within MPMX19_04878at 322.629 kb on + strand, within MPMX19_04878at 322.875 kb on + strand, within MPMX19_04878at 322.875 kb on + strand, within MPMX19_04878at 322.875 kb on + strand, within MPMX19_04878at 322.875 kb on + strand, within MPMX19_04878at 322.875 kb on + strand, within MPMX19_04878at 322.875 kb on + strand, within MPMX19_04878at 322.876 kb on - strand, within MPMX19_04878at 322.876 kb on - strand, within MPMX19_04878at 322.876 kb on - strand, within MPMX19_04878at 322.876 kb on - strand, within MPMX19_04878at 322.876 kb on - strand, within MPMX19_04878at 322.876 kb on - strand, within MPMX19_04878at 322.876 kb on - strand, within MPMX19_04878at 322.876 kb on - strand, within MPMX19_04878at 323.097 kb on + strand, within MPMX19_04878at 323.097 kb on + strand, within MPMX19_04878at 323.097 kb on + strand, within MPMX19_04878at 323.097 kb on + strand, within MPMX19_04878at 323.097 kb on + strand, within MPMX19_04878at 323.098 kb on - strand, within MPMX19_04878at 323.268 kb on + strandat 323.269 kb on - strandat 323.438 kb on + strandat 323.438 kb on + strandat 323.439 kb on - strandat 323.439 kb on - strandat 323.439 kb on - strandat 323.439 kb on - strandat 323.550 kb on - strandat 323.606 kb on + strand, within MPMX19_04879at 323.607 kb on - strand, within MPMX19_04879at 323.708 kb on + strandat 323.708 kb on + strandat 323.708 kb on + strandat 323.708 kb on + strandat 323.709 kb on - strandat 323.709 kb on - strandat 323.709 kb on - strandat 323.709 kb on - strandat 323.709 kb on - strandat 323.709 kb on - strandat 323.709 kb on - strandat 323.768 kb on + strandat 323.768 kb on + strandat 323.768 kb on + strandat 323.768 kb on + strandat 323.768 kb on + strandat 323.768 kb on + strandat 323.768 kb on + strandat 323.768 kb on + strandat 323.768 kb on + strandat 323.768 kb on + strandat 323.768 kb on + strandat 323.769 kb on - strandat 323.769 kb on - strandat 323.769 kb on - strandat 323.769 kb on - strandat 323.769 kb on - strandat 324.186 kb on + strand, within MPMX19_04880at 324.186 kb on + strand, within MPMX19_04880at 324.186 kb on + strand, within MPMX19_04880at 324.186 kb on + strand, within MPMX19_04880at 324.186 kb on + strand, within MPMX19_04880at 324.186 kb on + strand, within MPMX19_04880at 324.186 kb on + strand, within MPMX19_04880at 324.186 kb on + strand, within MPMX19_04880at 324.186 kb on + strand, within MPMX19_04880at 324.186 kb on + strand, within MPMX19_04880at 324.186 kb on + strand, within MPMX19_04880at 324.187 kb on - strand, within MPMX19_04880at 324.187 kb on - strand, within MPMX19_04880at 324.187 kb on - strand, within MPMX19_04880at 324.187 kb on - strand, within MPMX19_04880at 324.187 kb on - strand, within MPMX19_04880at 324.187 kb on - strand, within MPMX19_04880at 324.187 kb on - strand, within MPMX19_04880at 324.187 kb on - strand, within MPMX19_04880at 324.187 kb on - strand, within MPMX19_04880at 324.187 kb on - strand, within MPMX19_04880at 324.187 kb on - strand, within MPMX19_04880at 324.187 kb on - strand, within MPMX19_04880at 324.492 kb on + strand, within MPMX19_04880at 324.492 kb on + strand, within MPMX19_04880at 324.493 kb on - strand, within MPMX19_04880at 324.493 kb on - strand, within MPMX19_04880at 324.493 kb on - strand, within MPMX19_04880at 324.493 kb on - strand, within MPMX19_04880at 324.493 kb on - strand, within MPMX19_04880at 324.576 kb on + strandat 324.576 kb on + strandat 324.576 kb on + strandat 324.576 kb on + strandat 324.576 kb on + strandat 324.576 kb on + strandat 324.577 kb on - strandat 324.577 kb on - strandat 324.577 kb on - strandat 324.577 kb on - strandat 324.577 kb on - strandat 324.577 kb on - strandat 324.577 kb on - strandat 324.577 kb on - strandat 324.577 kb on - strandat 324.577 kb on - strandat 324.589 kb on - strandat 324.589 kb on - strandat 324.589 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction NF
remove
322,629 + MPMX19_04878 0.40 +0.1
322,629 + MPMX19_04878 0.40 +1.3
322,629 + MPMX19_04878 0.40 +0.2
322,629 + MPMX19_04878 0.40 +0.5
322,875 + MPMX19_04878 0.64 -0.2
322,875 + MPMX19_04878 0.64 +0.1
322,875 + MPMX19_04878 0.64 -0.5
322,875 + MPMX19_04878 0.64 -1.2
322,875 + MPMX19_04878 0.64 +0.3
322,875 + MPMX19_04878 0.64 +0.1
322,876 - MPMX19_04878 0.64 +0.3
322,876 - MPMX19_04878 0.64 +0.6
322,876 - MPMX19_04878 0.64 -0.5
322,876 - MPMX19_04878 0.64 +0.5
322,876 - MPMX19_04878 0.64 +0.1
322,876 - MPMX19_04878 0.64 +0.0
322,876 - MPMX19_04878 0.64 +0.3
322,876 - MPMX19_04878 0.64 -0.1
323,097 + MPMX19_04878 0.85 +0.6
323,097 + MPMX19_04878 0.85 +1.3
323,097 + MPMX19_04878 0.85 +1.4
323,097 + MPMX19_04878 0.85 +1.1
323,097 + MPMX19_04878 0.85 +1.0
323,098 - MPMX19_04878 0.85 -1.6
323,268 + -0.3
323,269 - -1.5
323,438 + -1.0
323,438 + +1.2
323,439 - +0.7
323,439 - -0.2
323,439 - +0.6
323,439 - +0.8
323,550 - -0.2
323,606 + MPMX19_04879 0.47 +1.7
323,607 - MPMX19_04879 0.48 -0.3
323,708 + -0.3
323,708 + -0.9
323,708 + -0.3
323,708 + +0.5
323,709 - -0.7
323,709 - -0.3
323,709 - -1.7
323,709 - -0.5
323,709 - +0.4
323,709 - -1.4
323,709 - -0.8
323,768 + -1.9
323,768 + -0.9
323,768 + -1.6
323,768 + -0.9
323,768 + +1.5
323,768 + +0.8
323,768 + +0.1
323,768 + -0.1
323,768 + -1.3
323,768 + -1.0
323,768 + -0.3
323,769 - +0.7
323,769 - -0.6
323,769 - -1.2
323,769 - -0.8
323,769 - -0.1
324,186 + MPMX19_04880 0.47 -2.1
324,186 + MPMX19_04880 0.47 -1.1
324,186 + MPMX19_04880 0.47 +0.1
324,186 + MPMX19_04880 0.47 -0.3
324,186 + MPMX19_04880 0.47 -1.1
324,186 + MPMX19_04880 0.47 +0.9
324,186 + MPMX19_04880 0.47 -0.1
324,186 + MPMX19_04880 0.47 +0.7
324,186 + MPMX19_04880 0.47 +0.3
324,186 + MPMX19_04880 0.47 +0.4
324,186 + MPMX19_04880 0.47 -1.8
324,187 - MPMX19_04880 0.47 +1.0
324,187 - MPMX19_04880 0.47 -1.6
324,187 - MPMX19_04880 0.47 +0.8
324,187 - MPMX19_04880 0.47 +0.7
324,187 - MPMX19_04880 0.47 +0.7
324,187 - MPMX19_04880 0.47 -0.9
324,187 - MPMX19_04880 0.47 -0.8
324,187 - MPMX19_04880 0.47 +1.4
324,187 - MPMX19_04880 0.47 -1.3
324,187 - MPMX19_04880 0.47 -0.2
324,187 - MPMX19_04880 0.47 +0.4
324,187 - MPMX19_04880 0.47 +0.6
324,492 + MPMX19_04880 0.83 -0.9
324,492 + MPMX19_04880 0.83 -0.4
324,493 - MPMX19_04880 0.83 -1.3
324,493 - MPMX19_04880 0.83 -1.5
324,493 - MPMX19_04880 0.83 -1.8
324,493 - MPMX19_04880 0.83 +1.4
324,493 - MPMX19_04880 0.83 +2.0
324,576 + -0.3
324,576 + -0.6
324,576 + +0.7
324,576 + -1.3
324,576 + -0.9
324,576 + -0.1
324,577 - -0.5
324,577 - +0.6
324,577 - -1.5
324,577 - -2.4
324,577 - -0.1
324,577 - -1.2
324,577 - +0.7
324,577 - +0.2
324,577 - +0.1
324,577 - +0.1
324,589 - -0.8
324,589 - -1.1
324,589 - -2.2

Or see this region's nucleotide sequence