Experiment: NF
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_04816 and MPMX19_04817 are separated by 227 nucleotides MPMX19_04817 and MPMX19_04818 are separated by 261 nucleotides MPMX19_04818 and MPMX19_04819 are separated by 354 nucleotides
MPMX19_04816: MPMX19_04816 - 3-oxoacyl-[acyl-carrier-protein] reductase, at 220,920 to 221,624
_04816
MPMX19_04817: MPMX19_04817 - HTH-type transcriptional repressor NsrR, at 221,852 to 222,304
_04817
MPMX19_04818: MPMX19_04818 - Hydroxyacylglutathione hydrolase GloC, at 222,566 to 223,198
_04818
MPMX19_04819: MPMX19_04819 - hypothetical protein, at 223,553 to 224,320
_04819
Position (kb) 222
223
224 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 221.659 kb on + strand at 221.659 kb on + strand at 221.659 kb on + strand at 221.659 kb on + strand at 221.660 kb on - strand at 221.660 kb on - strand at 221.660 kb on - strand at 221.660 kb on - strand at 221.660 kb on - strand at 221.660 kb on - strand at 221.660 kb on - strand at 221.733 kb on - strand at 221.816 kb on + strand at 221.838 kb on + strand at 221.847 kb on + strand at 221.847 kb on + strand at 221.847 kb on + strand at 221.847 kb on + strand at 221.847 kb on + strand at 221.850 kb on + strand at 221.850 kb on + strand at 221.850 kb on + strand at 222.200 kb on - strand, within MPMX19_04817 at 222.282 kb on + strand at 222.282 kb on + strand at 222.282 kb on + strand at 222.282 kb on + strand at 222.283 kb on - strand at 222.283 kb on - strand at 222.283 kb on - strand at 222.320 kb on - strand at 222.320 kb on - strand at 222.322 kb on + strand at 222.323 kb on - strand at 222.323 kb on - strand at 222.356 kb on + strand at 222.357 kb on - strand at 222.357 kb on - strand at 222.357 kb on - strand at 222.357 kb on - strand at 222.372 kb on - strand at 222.381 kb on + strand at 222.382 kb on - strand at 222.436 kb on + strand at 222.436 kb on + strand at 222.436 kb on + strand at 222.436 kb on + strand at 222.436 kb on + strand at 222.436 kb on + strand at 222.436 kb on + strand at 222.437 kb on - strand at 222.437 kb on - strand at 222.437 kb on - strand at 222.437 kb on - strand at 222.437 kb on - strand at 222.437 kb on - strand at 222.437 kb on - strand at 222.523 kb on + strand at 222.523 kb on + strand at 222.524 kb on - strand at 222.524 kb on - strand at 222.524 kb on - strand at 222.524 kb on - strand at 222.524 kb on - strand at 222.537 kb on + strand at 222.537 kb on + strand at 222.537 kb on + strand at 222.537 kb on + strand at 222.537 kb on + strand at 222.537 kb on + strand at 222.537 kb on + strand at 222.537 kb on + strand at 222.538 kb on - strand at 222.538 kb on - strand at 222.538 kb on - strand at 222.538 kb on - strand at 222.538 kb on - strand at 222.538 kb on - strand at 222.572 kb on + strand at 222.572 kb on + strand at 222.572 kb on + strand at 222.572 kb on + strand at 222.572 kb on + strand at 222.572 kb on + strand at 222.572 kb on + strand at 222.572 kb on + strand at 222.572 kb on + strand at 222.572 kb on + strand at 222.572 kb on + strand at 222.573 kb on - strand at 222.573 kb on - strand at 222.573 kb on - strand at 222.573 kb on - strand at 222.573 kb on - strand at 222.573 kb on - strand at 222.573 kb on - strand at 222.573 kb on - strand at 223.067 kb on + strand, within MPMX19_04818 at 223.067 kb on + strand, within MPMX19_04818 at 223.067 kb on + strand, within MPMX19_04818 at 223.067 kb on + strand, within MPMX19_04818 at 223.067 kb on + strand, within MPMX19_04818 at 223.067 kb on + strand, within MPMX19_04818 at 223.068 kb on - strand, within MPMX19_04818 at 223.068 kb on - strand, within MPMX19_04818 at 223.068 kb on - strand, within MPMX19_04818 at 223.068 kb on - strand, within MPMX19_04818 at 223.068 kb on - strand, within MPMX19_04818 at 223.068 kb on - strand, within MPMX19_04818 at 223.068 kb on - strand, within MPMX19_04818 at 223.068 kb on - strand, within MPMX19_04818 at 223.175 kb on + strand at 223.175 kb on + strand at 223.175 kb on + strand at 223.175 kb on + strand at 223.175 kb on + strand at 223.175 kb on + strand at 223.176 kb on - strand at 223.176 kb on - strand at 223.176 kb on - strand at 223.176 kb on - strand at 223.197 kb on - strand at 223.249 kb on + strand at 223.249 kb on + strand at 223.249 kb on + strand at 223.249 kb on + strand at 223.249 kb on + strand at 223.249 kb on + strand at 223.249 kb on + strand at 223.249 kb on + strand at 223.250 kb on - strand at 223.250 kb on - strand at 223.250 kb on - strand at 223.250 kb on - strand at 223.250 kb on - strand at 223.252 kb on - strand at 223.314 kb on - strand at 223.314 kb on - strand at 223.332 kb on + strand at 223.332 kb on + strand at 223.332 kb on + strand at 223.332 kb on + strand at 223.333 kb on - strand at 223.333 kb on - strand at 223.333 kb on - strand at 223.472 kb on + strand at 223.473 kb on - strand at 223.473 kb on - strand at 223.495 kb on + strand at 223.549 kb on + strand at 223.549 kb on + strand at 223.549 kb on + strand at 223.549 kb on + strand at 223.550 kb on - strand at 223.550 kb on - strand at 223.550 kb on - strand at 223.550 kb on - strand at 223.550 kb on - strand at 223.550 kb on - strand at 223.550 kb on - strand at 223.550 kb on - strand at 223.550 kb on - strand at 223.643 kb on + strand, within MPMX19_04819 at 223.643 kb on + strand, within MPMX19_04819 at 223.643 kb on + strand, within MPMX19_04819 at 223.643 kb on + strand, within MPMX19_04819 at 223.643 kb on + strand, within MPMX19_04819 at 223.643 kb on + strand, within MPMX19_04819 at 223.643 kb on + strand, within MPMX19_04819 at 223.643 kb on + strand, within MPMX19_04819 at 223.643 kb on + strand, within MPMX19_04819 at 223.643 kb on + strand, within MPMX19_04819 at 223.643 kb on + strand, within MPMX19_04819 at 223.643 kb on + strand, within MPMX19_04819 at 223.643 kb on + strand, within MPMX19_04819 at 223.643 kb on + strand, within MPMX19_04819 at 223.644 kb on - strand, within MPMX19_04819 at 223.644 kb on - strand, within MPMX19_04819 at 223.644 kb on - strand, within MPMX19_04819 at 223.644 kb on - strand, within MPMX19_04819 at 223.644 kb on - strand, within MPMX19_04819 at 223.644 kb on - strand, within MPMX19_04819 at 223.644 kb on - strand, within MPMX19_04819 at 223.644 kb on - strand, within MPMX19_04819 at 223.644 kb on - strand, within MPMX19_04819 at 223.644 kb on - strand, within MPMX19_04819 at 223.644 kb on - strand, within MPMX19_04819 at 223.644 kb on - strand, within MPMX19_04819 at 223.644 kb on - strand, within MPMX19_04819 at 223.644 kb on - strand, within MPMX19_04819 at 223.644 kb on - strand, within MPMX19_04819 at 223.644 kb on - strand, within MPMX19_04819 at 223.644 kb on - strand, within MPMX19_04819 at 223.644 kb on - strand, within MPMX19_04819 at 223.644 kb on - strand, within MPMX19_04819 at 223.644 kb on - strand, within MPMX19_04819 at 223.691 kb on + strand, within MPMX19_04819 at 223.691 kb on + strand, within MPMX19_04819 at 223.691 kb on + strand, within MPMX19_04819 at 223.691 kb on + strand, within MPMX19_04819 at 223.691 kb on + strand, within MPMX19_04819 at 223.691 kb on + strand, within MPMX19_04819 at 223.691 kb on + strand, within MPMX19_04819 at 223.691 kb on + strand, within MPMX19_04819 at 223.691 kb on + strand, within MPMX19_04819 at 223.691 kb on + strand, within MPMX19_04819 at 223.691 kb on + strand, within MPMX19_04819 at 223.692 kb on - strand, within MPMX19_04819 at 223.692 kb on - strand, within MPMX19_04819 at 223.692 kb on - strand, within MPMX19_04819 at 223.692 kb on - strand, within MPMX19_04819 at 223.692 kb on - strand, within MPMX19_04819 at 223.692 kb on - strand, within MPMX19_04819 at 223.692 kb on - strand, within MPMX19_04819 at 223.795 kb on - strand, within MPMX19_04819 at 223.924 kb on + strand, within MPMX19_04819 at 223.925 kb on - strand, within MPMX19_04819 at 224.057 kb on + strand, within MPMX19_04819 at 224.057 kb on + strand, within MPMX19_04819 at 224.057 kb on + strand, within MPMX19_04819 at 224.057 kb on + strand, within MPMX19_04819 at 224.057 kb on + strand, within MPMX19_04819 at 224.057 kb on + strand, within MPMX19_04819 at 224.058 kb on - strand, within MPMX19_04819 at 224.058 kb on - strand, within MPMX19_04819 at 224.058 kb on - strand, within MPMX19_04819 at 224.058 kb on - strand, within MPMX19_04819 at 224.058 kb on - strand, within MPMX19_04819 at 224.058 kb on - strand, within MPMX19_04819 at 224.058 kb on - strand, within MPMX19_04819 at 224.114 kb on + strand, within MPMX19_04819 at 224.114 kb on + strand, within MPMX19_04819 at 224.114 kb on + strand, within MPMX19_04819 at 224.114 kb on + strand, within MPMX19_04819 at 224.114 kb on + strand, within MPMX19_04819 at 224.114 kb on + strand, within MPMX19_04819 at 224.114 kb on + strand, within MPMX19_04819 at 224.114 kb on + strand, within MPMX19_04819 at 224.114 kb on + strand, within MPMX19_04819 at 224.114 kb on + strand, within MPMX19_04819 at 224.114 kb on + strand, within MPMX19_04819 at 224.114 kb on + strand, within MPMX19_04819 at 224.115 kb on - strand, within MPMX19_04819 at 224.115 kb on - strand, within MPMX19_04819 at 224.115 kb on - strand, within MPMX19_04819 at 224.115 kb on - strand, within MPMX19_04819 at 224.115 kb on - strand, within MPMX19_04819 at 224.115 kb on - strand, within MPMX19_04819 at 224.115 kb on - strand, within MPMX19_04819 at 224.115 kb on - strand, within MPMX19_04819 at 224.115 kb on - strand, within MPMX19_04819 at 224.115 kb on - strand, within MPMX19_04819 at 224.115 kb on - strand, within MPMX19_04819 at 224.115 kb on - strand, within MPMX19_04819 at 224.115 kb on - strand, within MPMX19_04819
Per-strain Table
Position Strand Gene LocusTag Fraction NF remove 221,659 + -0.6 221,659 + -0.6 221,659 + -0.3 221,659 + -2.2 221,660 - -1.8 221,660 - -0.6 221,660 - -0.1 221,660 - +0.3 221,660 - +1.5 221,660 - -1.0 221,660 - -0.8 221,733 - +1.4 221,816 + -1.1 221,838 + -0.0 221,847 + +2.5 221,847 + -0.6 221,847 + -0.2 221,847 + -1.6 221,847 + +1.1 221,850 + +0.8 221,850 + -0.5 221,850 + +0.4 222,200 - MPMX19_04817 0.77 -0.3 222,282 + -1.9 222,282 + +0.1 222,282 + -1.1 222,282 + +1.3 222,283 - -0.1 222,283 - -0.5 222,283 - +0.4 222,320 - -0.1 222,320 - -0.0 222,322 + +0.4 222,323 - -0.8 222,323 - -0.6 222,356 + -1.5 222,357 - +0.2 222,357 - -1.5 222,357 - -0.6 222,357 - -2.5 222,372 - -1.3 222,381 + -0.3 222,382 - -0.3 222,436 + +1.1 222,436 + -0.3 222,436 + +0.4 222,436 + -1.2 222,436 + -2.1 222,436 + -3.2 222,436 + +1.0 222,437 - +0.3 222,437 - +0.3 222,437 - +0.3 222,437 - -2.6 222,437 - +0.7 222,437 - -1.0 222,437 - +0.0 222,523 + -0.6 222,523 + -0.4 222,524 - -0.8 222,524 - +0.4 222,524 - -1.3 222,524 - -0.2 222,524 - -2.0 222,537 + -0.2 222,537 + -0.8 222,537 + +1.2 222,537 + -1.1 222,537 + -0.6 222,537 + +0.5 222,537 + +0.5 222,537 + -0.1 222,538 - -1.3 222,538 - +0.3 222,538 - -0.4 222,538 - -1.0 222,538 - -0.1 222,538 - -1.3 222,572 + -1.1 222,572 + -0.8 222,572 + +0.6 222,572 + +0.2 222,572 + +0.4 222,572 + -0.5 222,572 + -0.6 222,572 + +0.9 222,572 + -0.9 222,572 + -0.2 222,572 + -1.5 222,573 - -0.1 222,573 - +0.1 222,573 - -0.5 222,573 - -0.9 222,573 - -0.3 222,573 - -0.4 222,573 - +0.6 222,573 - +1.3 223,067 + MPMX19_04818 0.79 -0.8 223,067 + MPMX19_04818 0.79 -1.0 223,067 + MPMX19_04818 0.79 -0.2 223,067 + MPMX19_04818 0.79 -1.3 223,067 + MPMX19_04818 0.79 +1.4 223,067 + MPMX19_04818 0.79 -1.8 223,068 - MPMX19_04818 0.79 -1.2 223,068 - MPMX19_04818 0.79 -1.5 223,068 - MPMX19_04818 0.79 -1.8 223,068 - MPMX19_04818 0.79 +0.7 223,068 - MPMX19_04818 0.79 +0.7 223,068 - MPMX19_04818 0.79 -1.1 223,068 - MPMX19_04818 0.79 -1.5 223,068 - MPMX19_04818 0.79 -1.4 223,175 + -0.4 223,175 + -1.7 223,175 + -0.4 223,175 + +0.7 223,175 + -0.1 223,175 + -0.5 223,176 - +0.5 223,176 - -0.0 223,176 - -1.9 223,176 - -1.1 223,197 - -0.4 223,249 + +2.0 223,249 + +0.7 223,249 + -1.1 223,249 + +0.1 223,249 + +1.1 223,249 + -1.1 223,249 + +0.8 223,249 + -0.9 223,250 - -0.9 223,250 - -0.3 223,250 - -2.1 223,250 - -0.5 223,250 - -0.6 223,252 - -0.6 223,314 - +0.9 223,314 - -0.6 223,332 + +0.6 223,332 + -0.1 223,332 + -0.4 223,332 + -0.9 223,333 - +0.3 223,333 - -2.1 223,333 - -0.6 223,472 + -0.9 223,473 - -1.1 223,473 - +0.3 223,495 + +0.2 223,549 + -0.9 223,549 + -0.1 223,549 + +0.9 223,549 + -0.6 223,550 - -0.5 223,550 - -0.6 223,550 - -0.6 223,550 - -1.6 223,550 - -0.2 223,550 - +0.4 223,550 - -0.3 223,550 - -0.1 223,550 - +0.1 223,643 + MPMX19_04819 0.12 -0.8 223,643 + MPMX19_04819 0.12 -0.3 223,643 + MPMX19_04819 0.12 -0.3 223,643 + MPMX19_04819 0.12 +2.4 223,643 + MPMX19_04819 0.12 +0.1 223,643 + MPMX19_04819 0.12 +0.0 223,643 + MPMX19_04819 0.12 -2.3 223,643 + MPMX19_04819 0.12 -0.4 223,643 + MPMX19_04819 0.12 +0.0 223,643 + MPMX19_04819 0.12 -0.4 223,643 + MPMX19_04819 0.12 +0.8 223,643 + MPMX19_04819 0.12 -0.5 223,643 + MPMX19_04819 0.12 -1.5 223,643 + MPMX19_04819 0.12 +0.4 223,644 - MPMX19_04819 0.12 -0.6 223,644 - MPMX19_04819 0.12 +0.5 223,644 - MPMX19_04819 0.12 -1.5 223,644 - MPMX19_04819 0.12 +0.9 223,644 - MPMX19_04819 0.12 -0.8 223,644 - MPMX19_04819 0.12 -0.3 223,644 - MPMX19_04819 0.12 -0.5 223,644 - MPMX19_04819 0.12 +0.2 223,644 - MPMX19_04819 0.12 -0.8 223,644 - MPMX19_04819 0.12 -1.3 223,644 - MPMX19_04819 0.12 -1.4 223,644 - MPMX19_04819 0.12 -1.6 223,644 - MPMX19_04819 0.12 -0.3 223,644 - MPMX19_04819 0.12 -1.4 223,644 - MPMX19_04819 0.12 -0.9 223,644 - MPMX19_04819 0.12 +1.4 223,644 - MPMX19_04819 0.12 +0.1 223,644 - MPMX19_04819 0.12 +1.2 223,644 - MPMX19_04819 0.12 -1.3 223,644 - MPMX19_04819 0.12 -0.9 223,691 + MPMX19_04819 0.18 -2.6 223,691 + MPMX19_04819 0.18 -0.3 223,691 + MPMX19_04819 0.18 -0.4 223,691 + MPMX19_04819 0.18 -0.6 223,691 + MPMX19_04819 0.18 -0.9 223,691 + MPMX19_04819 0.18 +1.0 223,691 + MPMX19_04819 0.18 +0.0 223,691 + MPMX19_04819 0.18 +0.1 223,691 + MPMX19_04819 0.18 -0.6 223,691 + MPMX19_04819 0.18 -0.6 223,691 + MPMX19_04819 0.18 -0.7 223,692 - MPMX19_04819 0.18 -0.7 223,692 - MPMX19_04819 0.18 -0.7 223,692 - MPMX19_04819 0.18 -1.5 223,692 - MPMX19_04819 0.18 -0.3 223,692 - MPMX19_04819 0.18 -0.2 223,692 - MPMX19_04819 0.18 -2.5 223,692 - MPMX19_04819 0.18 +0.5 223,795 - MPMX19_04819 0.32 -1.1 223,924 + MPMX19_04819 0.48 +0.7 223,925 - MPMX19_04819 0.48 -1.4 224,057 + MPMX19_04819 0.66 -0.1 224,057 + MPMX19_04819 0.66 -0.8 224,057 + MPMX19_04819 0.66 -0.5 224,057 + MPMX19_04819 0.66 +0.8 224,057 + MPMX19_04819 0.66 -2.0 224,057 + MPMX19_04819 0.66 -0.8 224,058 - MPMX19_04819 0.66 +1.1 224,058 - MPMX19_04819 0.66 -0.5 224,058 - MPMX19_04819 0.66 -0.9 224,058 - MPMX19_04819 0.66 -0.3 224,058 - MPMX19_04819 0.66 -0.1 224,058 - MPMX19_04819 0.66 -1.3 224,058 - MPMX19_04819 0.66 +0.5 224,114 + MPMX19_04819 0.73 -0.4 224,114 + MPMX19_04819 0.73 +0.6 224,114 + MPMX19_04819 0.73 +0.5 224,114 + MPMX19_04819 0.73 -0.3 224,114 + MPMX19_04819 0.73 -0.5 224,114 + MPMX19_04819 0.73 +0.2 224,114 + MPMX19_04819 0.73 -1.3 224,114 + MPMX19_04819 0.73 -0.8 224,114 + MPMX19_04819 0.73 -0.5 224,114 + MPMX19_04819 0.73 -0.7 224,114 + MPMX19_04819 0.73 -0.7 224,114 + MPMX19_04819 0.73 -0.0 224,115 - MPMX19_04819 0.73 +0.3 224,115 - MPMX19_04819 0.73 +0.3 224,115 - MPMX19_04819 0.73 -1.2 224,115 - MPMX19_04819 0.73 -1.8 224,115 - MPMX19_04819 0.73 +0.0 224,115 - MPMX19_04819 0.73 -0.5 224,115 - MPMX19_04819 0.73 +0.6 224,115 - MPMX19_04819 0.73 -0.7 224,115 - MPMX19_04819 0.73 -0.6 224,115 - MPMX19_04819 0.73 -0.9 224,115 - MPMX19_04819 0.73 -0.1 224,115 - MPMX19_04819 0.73 -0.9 224,115 - MPMX19_04819 0.73 -1.2
Or see this region's nucleotide sequence