Experiment: NF
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_04738 and MPMX19_04739 overlap by 19 nucleotides MPMX19_04739 and MPMX19_04740 are separated by 50 nucleotides MPMX19_04740 and MPMX19_04741 are separated by 346 nucleotides
MPMX19_04738: MPMX19_04738 - hypothetical protein, at 128,663 to 129,841
_04738
MPMX19_04739: MPMX19_04739 - NAD(P)-dependent methylenetetrahydromethanopterin dehydrogenase, at 129,823 to 130,725
_04739
MPMX19_04740: MPMX19_04740 - hypothetical protein, at 130,776 to 131,810
_04740
MPMX19_04741: MPMX19_04741 - Formyltransferase/hydrolase complex Fhc subunit B, at 132,157 to 133,353
_04741
Position (kb)
130
131
132 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 129.881 kb on + strand at 129.881 kb on + strand at 129.881 kb on + strand at 129.881 kb on + strand at 129.882 kb on - strand at 129.882 kb on - strand at 129.882 kb on - strand at 129.882 kb on - strand at 130.220 kb on + strand, within MPMX19_04739 at 130.221 kb on - strand, within MPMX19_04739 at 130.221 kb on - strand, within MPMX19_04739 at 130.424 kb on + strand, within MPMX19_04739 at 130.424 kb on + strand, within MPMX19_04739 at 130.424 kb on + strand, within MPMX19_04739 at 130.425 kb on - strand, within MPMX19_04739 at 130.425 kb on - strand, within MPMX19_04739 at 130.425 kb on - strand, within MPMX19_04739 at 130.425 kb on - strand, within MPMX19_04739 at 130.425 kb on - strand, within MPMX19_04739 at 130.622 kb on + strand, within MPMX19_04739 at 130.622 kb on + strand, within MPMX19_04739 at 130.710 kb on + strand at 130.769 kb on + strand at 130.774 kb on - strand at 131.186 kb on - strand, within MPMX19_04740 at 131.186 kb on - strand, within MPMX19_04740 at 131.186 kb on - strand, within MPMX19_04740 at 131.596 kb on + strand, within MPMX19_04740 at 131.596 kb on + strand, within MPMX19_04740 at 131.596 kb on + strand, within MPMX19_04740 at 131.597 kb on - strand, within MPMX19_04740 at 131.597 kb on - strand, within MPMX19_04740 at 131.597 kb on - strand, within MPMX19_04740 at 131.597 kb on - strand, within MPMX19_04740 at 131.597 kb on - strand, within MPMX19_04740 at 131.597 kb on - strand, within MPMX19_04740 at 131.815 kb on + strand at 131.815 kb on + strand at 131.816 kb on - strand at 131.816 kb on - strand at 131.816 kb on - strand at 131.816 kb on - strand at 131.853 kb on + strand at 131.858 kb on - strand at 131.858 kb on - strand at 131.875 kb on + strand at 131.911 kb on - strand at 131.990 kb on - strand at 131.993 kb on + strand at 132.031 kb on + strand at 132.031 kb on + strand at 132.032 kb on - strand at 132.043 kb on + strand at 132.044 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NF remove 129,881 + +0.9 129,881 + -0.3 129,881 + -0.1 129,881 + -0.7 129,882 - +0.2 129,882 - -0.3 129,882 - +1.4 129,882 - -0.5 130,220 + MPMX19_04739 0.44 +0.3 130,221 - MPMX19_04739 0.44 -0.3 130,221 - MPMX19_04739 0.44 -0.0 130,424 + MPMX19_04739 0.67 +0.5 130,424 + MPMX19_04739 0.67 +0.4 130,424 + MPMX19_04739 0.67 +0.3 130,425 - MPMX19_04739 0.67 -0.9 130,425 - MPMX19_04739 0.67 -0.3 130,425 - MPMX19_04739 0.67 -0.2 130,425 - MPMX19_04739 0.67 -1.3 130,425 - MPMX19_04739 0.67 -0.6 130,622 + MPMX19_04739 0.88 +0.3 130,622 + MPMX19_04739 0.88 +0.7 130,710 + -1.4 130,769 + -0.9 130,774 - +0.2 131,186 - MPMX19_04740 0.40 -0.7 131,186 - MPMX19_04740 0.40 -0.4 131,186 - MPMX19_04740 0.40 -1.1 131,596 + MPMX19_04740 0.79 +0.5 131,596 + MPMX19_04740 0.79 -1.5 131,596 + MPMX19_04740 0.79 +0.9 131,597 - MPMX19_04740 0.79 +0.0 131,597 - MPMX19_04740 0.79 +0.7 131,597 - MPMX19_04740 0.79 +0.5 131,597 - MPMX19_04740 0.79 +1.1 131,597 - MPMX19_04740 0.79 -1.0 131,597 - MPMX19_04740 0.79 +0.0 131,815 + +0.3 131,815 + +0.6 131,816 - -0.1 131,816 - -0.9 131,816 - +0.7 131,816 - -0.9 131,853 + -1.9 131,858 - -0.1 131,858 - -1.1 131,875 + -0.7 131,911 - -0.9 131,990 - +0.1 131,993 + +2.3 132,031 + +1.4 132,031 + -2.0 132,032 - -0.0 132,043 + -1.1 132,044 - +0.3
Or see this region's nucleotide sequence