Experiment: NF
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_04738 and MPMX19_04739 overlap by 19 nucleotides MPMX19_04739 and MPMX19_04740 are separated by 50 nucleotides
MPMX19_04738: MPMX19_04738 - hypothetical protein, at 128,663 to 129,841
_04738
MPMX19_04739: MPMX19_04739 - NAD(P)-dependent methylenetetrahydromethanopterin dehydrogenase, at 129,823 to 130,725
_04739
MPMX19_04740: MPMX19_04740 - hypothetical protein, at 130,776 to 131,810
_04740
Position (kb)
129
130
131 Strain fitness (log2 ratio)
-1
0
1 at 128.907 kb on + strand, within MPMX19_04738 at 128.908 kb on - strand, within MPMX19_04738 at 129.327 kb on + strand, within MPMX19_04738 at 129.327 kb on + strand, within MPMX19_04738 at 129.328 kb on - strand, within MPMX19_04738 at 129.328 kb on - strand, within MPMX19_04738 at 129.328 kb on - strand, within MPMX19_04738 at 129.328 kb on - strand, within MPMX19_04738 at 129.881 kb on + strand at 129.881 kb on + strand at 129.881 kb on + strand at 129.881 kb on + strand at 129.882 kb on - strand at 129.882 kb on - strand at 129.882 kb on - strand at 129.882 kb on - strand at 130.220 kb on + strand, within MPMX19_04739 at 130.221 kb on - strand, within MPMX19_04739 at 130.221 kb on - strand, within MPMX19_04739 at 130.424 kb on + strand, within MPMX19_04739 at 130.424 kb on + strand, within MPMX19_04739 at 130.424 kb on + strand, within MPMX19_04739 at 130.425 kb on - strand, within MPMX19_04739 at 130.425 kb on - strand, within MPMX19_04739 at 130.425 kb on - strand, within MPMX19_04739 at 130.425 kb on - strand, within MPMX19_04739 at 130.425 kb on - strand, within MPMX19_04739 at 130.622 kb on + strand, within MPMX19_04739 at 130.622 kb on + strand, within MPMX19_04739 at 130.710 kb on + strand at 130.769 kb on + strand at 130.774 kb on - strand at 131.186 kb on - strand, within MPMX19_04740 at 131.186 kb on - strand, within MPMX19_04740 at 131.186 kb on - strand, within MPMX19_04740 at 131.596 kb on + strand, within MPMX19_04740 at 131.596 kb on + strand, within MPMX19_04740 at 131.596 kb on + strand, within MPMX19_04740 at 131.597 kb on - strand, within MPMX19_04740 at 131.597 kb on - strand, within MPMX19_04740 at 131.597 kb on - strand, within MPMX19_04740 at 131.597 kb on - strand, within MPMX19_04740 at 131.597 kb on - strand, within MPMX19_04740 at 131.597 kb on - strand, within MPMX19_04740
Per-strain Table
Position Strand Gene LocusTag Fraction NF remove 128,907 + MPMX19_04738 0.21 +0.7 128,908 - MPMX19_04738 0.21 +0.2 129,327 + MPMX19_04738 0.56 -0.1 129,327 + MPMX19_04738 0.56 -1.7 129,328 - MPMX19_04738 0.56 +0.5 129,328 - MPMX19_04738 0.56 -1.3 129,328 - MPMX19_04738 0.56 -0.7 129,328 - MPMX19_04738 0.56 +0.7 129,881 + +0.9 129,881 + -0.3 129,881 + -0.1 129,881 + -0.7 129,882 - +0.2 129,882 - -0.3 129,882 - +1.4 129,882 - -0.5 130,220 + MPMX19_04739 0.44 +0.3 130,221 - MPMX19_04739 0.44 -0.3 130,221 - MPMX19_04739 0.44 -0.0 130,424 + MPMX19_04739 0.67 +0.5 130,424 + MPMX19_04739 0.67 +0.4 130,424 + MPMX19_04739 0.67 +0.3 130,425 - MPMX19_04739 0.67 -0.9 130,425 - MPMX19_04739 0.67 -0.3 130,425 - MPMX19_04739 0.67 -0.2 130,425 - MPMX19_04739 0.67 -1.3 130,425 - MPMX19_04739 0.67 -0.6 130,622 + MPMX19_04739 0.88 +0.3 130,622 + MPMX19_04739 0.88 +0.7 130,710 + -1.4 130,769 + -0.9 130,774 - +0.2 131,186 - MPMX19_04740 0.40 -0.7 131,186 - MPMX19_04740 0.40 -0.4 131,186 - MPMX19_04740 0.40 -1.1 131,596 + MPMX19_04740 0.79 +0.5 131,596 + MPMX19_04740 0.79 -1.5 131,596 + MPMX19_04740 0.79 +0.9 131,597 - MPMX19_04740 0.79 +0.0 131,597 - MPMX19_04740 0.79 +0.7 131,597 - MPMX19_04740 0.79 +0.5 131,597 - MPMX19_04740 0.79 +1.1 131,597 - MPMX19_04740 0.79 -1.0 131,597 - MPMX19_04740 0.79 +0.0
Or see this region's nucleotide sequence