Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_04726

Experiment: NF

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_04725 and MPMX19_04726 are separated by 3 nucleotidesMPMX19_04726 and MPMX19_04727 are separated by 140 nucleotidesMPMX19_04727 and MPMX19_04728 are separated by 3 nucleotides MPMX19_04725: MPMX19_04725 - Glycine betaine/choline transport system ATP-binding protein OusV, at 116,310 to 117,593 _04725 MPMX19_04726: MPMX19_04726 - Glycine betaine/choline transport system permease protein OusW, at 117,597 to 118,481 _04726 MPMX19_04727: MPMX19_04727 - hypothetical protein, at 118,622 to 119,224 _04727 MPMX19_04728: MPMX19_04728 - Aminodeoxychorismate synthase component 1, at 119,228 to 120,679 _04728 Position (kb) 117 118 119Strain fitness (log2 ratio) -2 -1 0 1 2 3at 116.871 kb on + strand, within MPMX19_04725at 116.871 kb on + strand, within MPMX19_04725at 116.871 kb on + strand, within MPMX19_04725at 116.871 kb on + strand, within MPMX19_04725at 116.871 kb on + strand, within MPMX19_04725at 116.871 kb on + strand, within MPMX19_04725at 116.871 kb on + strand, within MPMX19_04725at 116.871 kb on + strand, within MPMX19_04725at 116.871 kb on + strand, within MPMX19_04725at 116.871 kb on + strand, within MPMX19_04725at 116.871 kb on + strand, within MPMX19_04725at 116.871 kb on + strand, within MPMX19_04725at 116.871 kb on + strand, within MPMX19_04725at 116.871 kb on + strand, within MPMX19_04725at 116.871 kb on + strand, within MPMX19_04725at 116.871 kb on + strand, within MPMX19_04725at 116.871 kb on + strand, within MPMX19_04725at 116.872 kb on - strand, within MPMX19_04725at 116.872 kb on - strand, within MPMX19_04725at 116.872 kb on - strand, within MPMX19_04725at 116.872 kb on - strand, within MPMX19_04725at 116.872 kb on - strand, within MPMX19_04725at 116.872 kb on - strand, within MPMX19_04725at 116.872 kb on - strand, within MPMX19_04725at 116.872 kb on - strand, within MPMX19_04725at 116.872 kb on - strand, within MPMX19_04725at 116.872 kb on - strand, within MPMX19_04725at 116.872 kb on - strand, within MPMX19_04725at 116.872 kb on - strand, within MPMX19_04725at 116.872 kb on - strand, within MPMX19_04725at 116.872 kb on - strand, within MPMX19_04725at 116.872 kb on - strand, within MPMX19_04725at 116.872 kb on - strand, within MPMX19_04725at 116.872 kb on - strand, within MPMX19_04725at 117.150 kb on + strand, within MPMX19_04725at 117.151 kb on - strand, within MPMX19_04725at 117.180 kb on + strand, within MPMX19_04725at 117.180 kb on + strand, within MPMX19_04725at 117.180 kb on + strand, within MPMX19_04725at 117.181 kb on - strand, within MPMX19_04725at 117.181 kb on - strand, within MPMX19_04725at 117.181 kb on - strand, within MPMX19_04725at 117.181 kb on - strand, within MPMX19_04725at 117.181 kb on - strand, within MPMX19_04725at 117.181 kb on - strand, within MPMX19_04725at 117.181 kb on - strand, within MPMX19_04725at 117.333 kb on + strand, within MPMX19_04725at 117.334 kb on - strand, within MPMX19_04725at 118.008 kb on + strand, within MPMX19_04726at 118.008 kb on + strand, within MPMX19_04726at 118.008 kb on + strand, within MPMX19_04726at 118.009 kb on - strand, within MPMX19_04726at 118.009 kb on - strand, within MPMX19_04726at 118.009 kb on - strand, within MPMX19_04726at 118.009 kb on - strand, within MPMX19_04726at 118.009 kb on - strand, within MPMX19_04726at 118.009 kb on - strand, within MPMX19_04726at 118.009 kb on - strand, within MPMX19_04726at 118.435 kb on + strandat 118.712 kb on + strand, within MPMX19_04727at 118.712 kb on + strand, within MPMX19_04727at 118.713 kb on - strand, within MPMX19_04727at 118.713 kb on - strand, within MPMX19_04727at 118.719 kb on - strand, within MPMX19_04727at 118.719 kb on - strand, within MPMX19_04727at 118.737 kb on - strand, within MPMX19_04727at 118.748 kb on + strand, within MPMX19_04727at 118.748 kb on + strand, within MPMX19_04727at 118.748 kb on + strand, within MPMX19_04727at 118.748 kb on + strand, within MPMX19_04727at 118.748 kb on + strand, within MPMX19_04727at 118.749 kb on - strand, within MPMX19_04727at 118.749 kb on - strand, within MPMX19_04727at 118.749 kb on - strand, within MPMX19_04727at 118.749 kb on - strand, within MPMX19_04727at 118.907 kb on + strand, within MPMX19_04727at 118.908 kb on - strand, within MPMX19_04727at 119.069 kb on + strand, within MPMX19_04727at 119.070 kb on - strand, within MPMX19_04727at 119.312 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NF
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116,871 + MPMX19_04725 0.44 +1.3
116,871 + MPMX19_04725 0.44 -2.3
116,871 + MPMX19_04725 0.44 +0.7
116,871 + MPMX19_04725 0.44 +0.1
116,871 + MPMX19_04725 0.44 -0.5
116,871 + MPMX19_04725 0.44 -0.9
116,871 + MPMX19_04725 0.44 -1.2
116,871 + MPMX19_04725 0.44 -2.1
116,871 + MPMX19_04725 0.44 -0.7
116,871 + MPMX19_04725 0.44 +0.3
116,871 + MPMX19_04725 0.44 +0.8
116,871 + MPMX19_04725 0.44 -1.8
116,871 + MPMX19_04725 0.44 +0.4
116,871 + MPMX19_04725 0.44 -0.9
116,871 + MPMX19_04725 0.44 -0.1
116,871 + MPMX19_04725 0.44 +0.5
116,871 + MPMX19_04725 0.44 +0.3
116,872 - MPMX19_04725 0.44 -0.5
116,872 - MPMX19_04725 0.44 +0.6
116,872 - MPMX19_04725 0.44 -0.5
116,872 - MPMX19_04725 0.44 +0.1
116,872 - MPMX19_04725 0.44 -1.3
116,872 - MPMX19_04725 0.44 -0.2
116,872 - MPMX19_04725 0.44 -0.7
116,872 - MPMX19_04725 0.44 -1.3
116,872 - MPMX19_04725 0.44 -0.3
116,872 - MPMX19_04725 0.44 -1.8
116,872 - MPMX19_04725 0.44 -0.5
116,872 - MPMX19_04725 0.44 -1.7
116,872 - MPMX19_04725 0.44 -0.4
116,872 - MPMX19_04725 0.44 -0.6
116,872 - MPMX19_04725 0.44 -0.2
116,872 - MPMX19_04725 0.44 -0.7
116,872 - MPMX19_04725 0.44 -1.7
117,150 + MPMX19_04725 0.65 +1.5
117,151 - MPMX19_04725 0.65 -1.6
117,180 + MPMX19_04725 0.68 +0.9
117,180 + MPMX19_04725 0.68 -0.7
117,180 + MPMX19_04725 0.68 +0.3
117,181 - MPMX19_04725 0.68 -1.1
117,181 - MPMX19_04725 0.68 -0.7
117,181 - MPMX19_04725 0.68 -0.1
117,181 - MPMX19_04725 0.68 +0.3
117,181 - MPMX19_04725 0.68 +0.5
117,181 - MPMX19_04725 0.68 -1.0
117,181 - MPMX19_04725 0.68 -0.9
117,333 + MPMX19_04725 0.80 -1.9
117,334 - MPMX19_04725 0.80 -1.0
118,008 + MPMX19_04726 0.46 +2.3
118,008 + MPMX19_04726 0.46 -2.6
118,008 + MPMX19_04726 0.46 +0.7
118,009 - MPMX19_04726 0.47 +1.9
118,009 - MPMX19_04726 0.47 +1.7
118,009 - MPMX19_04726 0.47 -0.2
118,009 - MPMX19_04726 0.47 +0.9
118,009 - MPMX19_04726 0.47 -1.5
118,009 - MPMX19_04726 0.47 +0.7
118,009 - MPMX19_04726 0.47 -0.9
118,435 + -0.1
118,712 + MPMX19_04727 0.15 -0.9
118,712 + MPMX19_04727 0.15 +0.2
118,713 - MPMX19_04727 0.15 +1.3
118,713 - MPMX19_04727 0.15 +0.9
118,719 - MPMX19_04727 0.16 +0.5
118,719 - MPMX19_04727 0.16 +0.2
118,737 - MPMX19_04727 0.19 -0.7
118,748 + MPMX19_04727 0.21 -0.3
118,748 + MPMX19_04727 0.21 +0.7
118,748 + MPMX19_04727 0.21 -0.1
118,748 + MPMX19_04727 0.21 +0.1
118,748 + MPMX19_04727 0.21 -1.4
118,749 - MPMX19_04727 0.21 -2.7
118,749 - MPMX19_04727 0.21 -1.1
118,749 - MPMX19_04727 0.21 +0.7
118,749 - MPMX19_04727 0.21 -0.8
118,907 + MPMX19_04727 0.47 -0.0
118,908 - MPMX19_04727 0.47 -0.3
119,069 + MPMX19_04727 0.74 -1.7
119,070 - MPMX19_04727 0.74 +0.7
119,312 + +3.3

Or see this region's nucleotide sequence