Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_04720

Experiment: NF

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_04719 and MPMX19_04720 are separated by 65 nucleotidesMPMX19_04720 and MPMX19_04721 are separated by 167 nucleotides MPMX19_04719: MPMX19_04719 - 3-ketosteroid-9-alpha-monooxygenase, ferredoxin reductase component, at 107,675 to 108,796 _04719 MPMX19_04720: MPMX19_04720 - HTH-type transcriptional activator RhaS, at 108,862 to 110,058 _04720 MPMX19_04721: MPMX19_04721 - putative N-methylproline demethylase, at 110,226 to 112,271 _04721 Position (kb) 108 109 110 111Strain fitness (log2 ratio) -2 -1 0 1 2at 107.885 kb on + strand, within MPMX19_04719at 107.885 kb on + strand, within MPMX19_04719at 107.886 kb on - strand, within MPMX19_04719at 107.886 kb on - strand, within MPMX19_04719at 107.886 kb on - strand, within MPMX19_04719at 108.347 kb on + strand, within MPMX19_04719at 108.347 kb on + strand, within MPMX19_04719at 108.347 kb on + strand, within MPMX19_04719at 108.347 kb on + strand, within MPMX19_04719at 108.347 kb on + strand, within MPMX19_04719at 108.347 kb on + strand, within MPMX19_04719at 108.347 kb on + strand, within MPMX19_04719at 108.347 kb on + strand, within MPMX19_04719at 108.347 kb on + strand, within MPMX19_04719at 108.347 kb on + strand, within MPMX19_04719at 108.347 kb on + strand, within MPMX19_04719at 108.347 kb on + strand, within MPMX19_04719at 108.347 kb on + strand, within MPMX19_04719at 108.348 kb on - strand, within MPMX19_04719at 108.348 kb on - strand, within MPMX19_04719at 108.348 kb on - strand, within MPMX19_04719at 108.348 kb on - strand, within MPMX19_04719at 108.348 kb on - strand, within MPMX19_04719at 108.348 kb on - strand, within MPMX19_04719at 108.348 kb on - strand, within MPMX19_04719at 108.348 kb on - strand, within MPMX19_04719at 108.348 kb on - strand, within MPMX19_04719at 108.348 kb on - strand, within MPMX19_04719at 108.348 kb on - strand, within MPMX19_04719at 108.348 kb on - strand, within MPMX19_04719at 108.348 kb on - strand, within MPMX19_04719at 108.348 kb on - strand, within MPMX19_04719at 108.795 kb on - strandat 108.841 kb on + strandat 108.842 kb on - strandat 108.842 kb on - strandat 108.842 kb on - strandat 108.842 kb on - strandat 109.189 kb on + strand, within MPMX19_04720at 109.189 kb on + strand, within MPMX19_04720at 109.189 kb on + strand, within MPMX19_04720at 109.189 kb on + strand, within MPMX19_04720at 109.189 kb on + strand, within MPMX19_04720at 109.189 kb on + strand, within MPMX19_04720at 109.189 kb on + strand, within MPMX19_04720at 109.189 kb on + strand, within MPMX19_04720at 109.189 kb on + strand, within MPMX19_04720at 109.189 kb on + strand, within MPMX19_04720at 109.190 kb on - strand, within MPMX19_04720at 109.190 kb on - strand, within MPMX19_04720at 109.190 kb on - strand, within MPMX19_04720at 109.190 kb on - strand, within MPMX19_04720at 109.190 kb on - strand, within MPMX19_04720at 109.190 kb on - strand, within MPMX19_04720at 109.252 kb on + strand, within MPMX19_04720at 109.252 kb on + strand, within MPMX19_04720at 109.253 kb on - strand, within MPMX19_04720at 109.253 kb on - strand, within MPMX19_04720at 109.253 kb on - strand, within MPMX19_04720at 109.253 kb on - strand, within MPMX19_04720at 109.253 kb on - strand, within MPMX19_04720at 109.273 kb on + strand, within MPMX19_04720at 109.273 kb on + strand, within MPMX19_04720at 109.273 kb on + strand, within MPMX19_04720at 109.274 kb on - strand, within MPMX19_04720at 109.274 kb on - strand, within MPMX19_04720at 109.364 kb on - strand, within MPMX19_04720at 109.364 kb on - strand, within MPMX19_04720at 109.423 kb on + strand, within MPMX19_04720at 109.423 kb on + strand, within MPMX19_04720at 109.423 kb on + strand, within MPMX19_04720at 109.423 kb on + strand, within MPMX19_04720at 109.423 kb on + strand, within MPMX19_04720at 109.423 kb on + strand, within MPMX19_04720at 109.423 kb on + strand, within MPMX19_04720at 109.423 kb on + strand, within MPMX19_04720at 109.424 kb on - strand, within MPMX19_04720at 109.424 kb on - strand, within MPMX19_04720at 109.424 kb on - strand, within MPMX19_04720at 109.424 kb on - strand, within MPMX19_04720at 109.424 kb on - strand, within MPMX19_04720at 109.424 kb on - strand, within MPMX19_04720at 109.424 kb on - strand, within MPMX19_04720at 109.424 kb on - strand, within MPMX19_04720at 109.424 kb on - strand, within MPMX19_04720at 109.424 kb on - strand, within MPMX19_04720at 109.424 kb on - strand, within MPMX19_04720at 109.424 kb on - strand, within MPMX19_04720at 109.424 kb on - strand, within MPMX19_04720at 109.424 kb on - strand, within MPMX19_04720at 109.424 kb on - strand, within MPMX19_04720at 109.424 kb on - strand, within MPMX19_04720at 109.424 kb on - strand, within MPMX19_04720at 109.756 kb on + strand, within MPMX19_04720at 109.756 kb on + strand, within MPMX19_04720at 109.756 kb on + strand, within MPMX19_04720at 109.756 kb on + strand, within MPMX19_04720at 109.756 kb on + strand, within MPMX19_04720at 109.756 kb on + strand, within MPMX19_04720at 109.756 kb on + strand, within MPMX19_04720at 109.756 kb on + strand, within MPMX19_04720at 109.756 kb on + strand, within MPMX19_04720at 109.757 kb on - strand, within MPMX19_04720at 109.757 kb on - strand, within MPMX19_04720at 109.757 kb on - strand, within MPMX19_04720at 109.757 kb on - strand, within MPMX19_04720at 109.757 kb on - strand, within MPMX19_04720at 109.757 kb on - strand, within MPMX19_04720at 109.757 kb on - strand, within MPMX19_04720at 109.757 kb on - strand, within MPMX19_04720at 109.757 kb on - strand, within MPMX19_04720at 109.757 kb on - strand, within MPMX19_04720at 109.757 kb on - strand, within MPMX19_04720at 109.757 kb on - strand, within MPMX19_04720at 109.757 kb on - strand, within MPMX19_04720at 109.757 kb on - strand, within MPMX19_04720at 109.757 kb on - strand, within MPMX19_04720at 109.757 kb on - strand, within MPMX19_04720at 109.757 kb on - strand, within MPMX19_04720at 109.757 kb on - strand, within MPMX19_04720at 109.757 kb on - strand, within MPMX19_04720at 109.757 kb on - strand, within MPMX19_04720at 109.759 kb on + strand, within MPMX19_04720at 109.760 kb on - strand, within MPMX19_04720at 109.781 kb on - strand, within MPMX19_04720at 110.068 kb on + strandat 110.068 kb on + strandat 110.068 kb on + strandat 110.068 kb on + strandat 110.068 kb on + strandat 110.069 kb on - strandat 110.069 kb on - strandat 110.094 kb on + strandat 110.095 kb on - strandat 110.096 kb on + strandat 110.096 kb on + strandat 110.096 kb on + strandat 110.096 kb on + strandat 110.097 kb on - strandat 110.097 kb on - strandat 110.349 kb on + strandat 110.349 kb on + strandat 110.358 kb on + strandat 110.359 kb on - strandat 110.682 kb on + strand, within MPMX19_04721at 110.683 kb on - strand, within MPMX19_04721at 110.802 kb on + strand, within MPMX19_04721at 110.803 kb on - strand, within MPMX19_04721at 110.880 kb on + strand, within MPMX19_04721at 110.880 kb on + strand, within MPMX19_04721at 110.880 kb on + strand, within MPMX19_04721at 110.880 kb on + strand, within MPMX19_04721at 110.880 kb on + strand, within MPMX19_04721at 110.880 kb on + strand, within MPMX19_04721at 110.880 kb on + strand, within MPMX19_04721at 110.880 kb on + strand, within MPMX19_04721at 110.880 kb on + strand, within MPMX19_04721at 110.880 kb on + strand, within MPMX19_04721at 110.881 kb on - strand, within MPMX19_04721at 110.881 kb on - strand, within MPMX19_04721at 110.881 kb on - strand, within MPMX19_04721at 110.881 kb on - strand, within MPMX19_04721at 110.881 kb on - strand, within MPMX19_04721at 110.881 kb on - strand, within MPMX19_04721at 110.881 kb on - strand, within MPMX19_04721at 110.881 kb on - strand, within MPMX19_04721at 110.881 kb on - strand, within MPMX19_04721at 110.881 kb on - strand, within MPMX19_04721at 110.881 kb on - strand, within MPMX19_04721at 110.881 kb on - strand, within MPMX19_04721at 110.881 kb on - strand, within MPMX19_04721at 110.964 kb on + strand, within MPMX19_04721at 110.964 kb on + strand, within MPMX19_04721at 110.964 kb on + strand, within MPMX19_04721at 110.964 kb on + strand, within MPMX19_04721at 110.964 kb on + strand, within MPMX19_04721at 110.964 kb on + strand, within MPMX19_04721at 110.965 kb on - strand, within MPMX19_04721at 110.965 kb on - strand, within MPMX19_04721at 110.965 kb on - strand, within MPMX19_04721

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Per-strain Table

Position Strand Gene LocusTag Fraction NF
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107,885 + MPMX19_04719 0.19 +0.7
107,885 + MPMX19_04719 0.19 -0.1
107,886 - MPMX19_04719 0.19 -0.6
107,886 - MPMX19_04719 0.19 -1.1
107,886 - MPMX19_04719 0.19 +0.4
108,347 + MPMX19_04719 0.60 -0.6
108,347 + MPMX19_04719 0.60 +1.7
108,347 + MPMX19_04719 0.60 -0.3
108,347 + MPMX19_04719 0.60 -0.5
108,347 + MPMX19_04719 0.60 -0.7
108,347 + MPMX19_04719 0.60 -0.7
108,347 + MPMX19_04719 0.60 -1.3
108,347 + MPMX19_04719 0.60 -0.9
108,347 + MPMX19_04719 0.60 -0.3
108,347 + MPMX19_04719 0.60 -0.8
108,347 + MPMX19_04719 0.60 -0.8
108,347 + MPMX19_04719 0.60 -1.1
108,347 + MPMX19_04719 0.60 -0.6
108,348 - MPMX19_04719 0.60 +0.7
108,348 - MPMX19_04719 0.60 -0.1
108,348 - MPMX19_04719 0.60 +0.2
108,348 - MPMX19_04719 0.60 -0.9
108,348 - MPMX19_04719 0.60 -0.7
108,348 - MPMX19_04719 0.60 -0.3
108,348 - MPMX19_04719 0.60 -1.3
108,348 - MPMX19_04719 0.60 -0.6
108,348 - MPMX19_04719 0.60 +0.7
108,348 - MPMX19_04719 0.60 -1.4
108,348 - MPMX19_04719 0.60 -0.8
108,348 - MPMX19_04719 0.60 -0.1
108,348 - MPMX19_04719 0.60 -0.5
108,348 - MPMX19_04719 0.60 +0.2
108,795 - +0.7
108,841 + +0.7
108,842 - +0.9
108,842 - +1.7
108,842 - -0.7
108,842 - -0.2
109,189 + MPMX19_04720 0.27 +0.3
109,189 + MPMX19_04720 0.27 -0.9
109,189 + MPMX19_04720 0.27 -0.3
109,189 + MPMX19_04720 0.27 +2.1
109,189 + MPMX19_04720 0.27 +0.5
109,189 + MPMX19_04720 0.27 +0.8
109,189 + MPMX19_04720 0.27 -2.5
109,189 + MPMX19_04720 0.27 -0.3
109,189 + MPMX19_04720 0.27 -0.8
109,189 + MPMX19_04720 0.27 -2.0
109,190 - MPMX19_04720 0.27 +0.3
109,190 - MPMX19_04720 0.27 -1.2
109,190 - MPMX19_04720 0.27 -1.1
109,190 - MPMX19_04720 0.27 +0.7
109,190 - MPMX19_04720 0.27 -0.9
109,190 - MPMX19_04720 0.27 -1.7
109,252 + MPMX19_04720 0.33 -0.9
109,252 + MPMX19_04720 0.33 -0.9
109,253 - MPMX19_04720 0.33 -1.1
109,253 - MPMX19_04720 0.33 -0.2
109,253 - MPMX19_04720 0.33 +0.2
109,253 - MPMX19_04720 0.33 -0.2
109,253 - MPMX19_04720 0.33 +0.2
109,273 + MPMX19_04720 0.34 -1.5
109,273 + MPMX19_04720 0.34 +2.7
109,273 + MPMX19_04720 0.34 +0.4
109,274 - MPMX19_04720 0.34 +2.1
109,274 - MPMX19_04720 0.34 +0.4
109,364 - MPMX19_04720 0.42 +0.1
109,364 - MPMX19_04720 0.42 +1.0
109,423 + MPMX19_04720 0.47 -1.1
109,423 + MPMX19_04720 0.47 -0.7
109,423 + MPMX19_04720 0.47 -0.3
109,423 + MPMX19_04720 0.47 -1.1
109,423 + MPMX19_04720 0.47 +1.3
109,423 + MPMX19_04720 0.47 -0.8
109,423 + MPMX19_04720 0.47 -0.2
109,423 + MPMX19_04720 0.47 -0.0
109,424 - MPMX19_04720 0.47 -0.4
109,424 - MPMX19_04720 0.47 -1.0
109,424 - MPMX19_04720 0.47 -0.7
109,424 - MPMX19_04720 0.47 -0.8
109,424 - MPMX19_04720 0.47 -0.9
109,424 - MPMX19_04720 0.47 -0.1
109,424 - MPMX19_04720 0.47 -0.3
109,424 - MPMX19_04720 0.47 +1.2
109,424 - MPMX19_04720 0.47 +0.1
109,424 - MPMX19_04720 0.47 -0.9
109,424 - MPMX19_04720 0.47 -1.3
109,424 - MPMX19_04720 0.47 -0.1
109,424 - MPMX19_04720 0.47 +0.9
109,424 - MPMX19_04720 0.47 -0.2
109,424 - MPMX19_04720 0.47 -1.0
109,424 - MPMX19_04720 0.47 +0.3
109,424 - MPMX19_04720 0.47 -1.1
109,756 + MPMX19_04720 0.75 -1.1
109,756 + MPMX19_04720 0.75 -0.7
109,756 + MPMX19_04720 0.75 +1.2
109,756 + MPMX19_04720 0.75 -0.7
109,756 + MPMX19_04720 0.75 +2.3
109,756 + MPMX19_04720 0.75 -0.7
109,756 + MPMX19_04720 0.75 +0.3
109,756 + MPMX19_04720 0.75 -0.5
109,756 + MPMX19_04720 0.75 -0.2
109,757 - MPMX19_04720 0.75 -0.6
109,757 - MPMX19_04720 0.75 -0.4
109,757 - MPMX19_04720 0.75 -0.8
109,757 - MPMX19_04720 0.75 +0.1
109,757 - MPMX19_04720 0.75 -1.5
109,757 - MPMX19_04720 0.75 -0.1
109,757 - MPMX19_04720 0.75 -2.0
109,757 - MPMX19_04720 0.75 +0.7
109,757 - MPMX19_04720 0.75 +0.2
109,757 - MPMX19_04720 0.75 -0.3
109,757 - MPMX19_04720 0.75 -0.1
109,757 - MPMX19_04720 0.75 -0.7
109,757 - MPMX19_04720 0.75 -1.4
109,757 - MPMX19_04720 0.75 +0.1
109,757 - MPMX19_04720 0.75 -0.5
109,757 - MPMX19_04720 0.75 -0.5
109,757 - MPMX19_04720 0.75 -1.3
109,757 - MPMX19_04720 0.75 -0.7
109,757 - MPMX19_04720 0.75 -0.7
109,757 - MPMX19_04720 0.75 -0.0
109,759 + MPMX19_04720 0.75 -0.5
109,760 - MPMX19_04720 0.75 -0.2
109,781 - MPMX19_04720 0.77 +0.1
110,068 + -1.1
110,068 + -0.7
110,068 + +1.1
110,068 + -1.1
110,068 + -1.1
110,069 - +0.3
110,069 - -0.1
110,094 + -0.6
110,095 - -0.3
110,096 + -1.5
110,096 + -1.7
110,096 + -0.9
110,096 + -0.5
110,097 - +0.1
110,097 - -0.3
110,349 + +1.7
110,349 + -1.7
110,358 + +2.1
110,359 - +2.0
110,682 + MPMX19_04721 0.22 -0.9
110,683 - MPMX19_04721 0.22 -0.2
110,802 + MPMX19_04721 0.28 +0.5
110,803 - MPMX19_04721 0.28 +0.5
110,880 + MPMX19_04721 0.32 -0.6
110,880 + MPMX19_04721 0.32 +0.2
110,880 + MPMX19_04721 0.32 +0.6
110,880 + MPMX19_04721 0.32 -1.0
110,880 + MPMX19_04721 0.32 -0.3
110,880 + MPMX19_04721 0.32 -0.1
110,880 + MPMX19_04721 0.32 +0.1
110,880 + MPMX19_04721 0.32 -2.3
110,880 + MPMX19_04721 0.32 -0.9
110,880 + MPMX19_04721 0.32 -0.3
110,881 - MPMX19_04721 0.32 -1.2
110,881 - MPMX19_04721 0.32 -0.2
110,881 - MPMX19_04721 0.32 -0.9
110,881 - MPMX19_04721 0.32 +1.3
110,881 - MPMX19_04721 0.32 -0.0
110,881 - MPMX19_04721 0.32 -1.3
110,881 - MPMX19_04721 0.32 -1.5
110,881 - MPMX19_04721 0.32 -0.9
110,881 - MPMX19_04721 0.32 -1.9
110,881 - MPMX19_04721 0.32 -1.1
110,881 - MPMX19_04721 0.32 +2.1
110,881 - MPMX19_04721 0.32 +1.5
110,881 - MPMX19_04721 0.32 -0.9
110,964 + MPMX19_04721 0.36 -0.3
110,964 + MPMX19_04721 0.36 +2.1
110,964 + MPMX19_04721 0.36 -0.9
110,964 + MPMX19_04721 0.36 -0.7
110,964 + MPMX19_04721 0.36 -0.2
110,964 + MPMX19_04721 0.36 -0.1
110,965 - MPMX19_04721 0.36 +2.3
110,965 - MPMX19_04721 0.36 -0.9
110,965 - MPMX19_04721 0.36 -0.1

Or see this region's nucleotide sequence