Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_04658

Experiment: NF

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_04656 and MPMX19_04657 overlap by 4 nucleotidesMPMX19_04657 and MPMX19_04658 are separated by 1 nucleotidesMPMX19_04658 and MPMX19_04659 are separated by 26 nucleotidesMPMX19_04659 and MPMX19_04660 overlap by 8 nucleotides MPMX19_04656: MPMX19_04656 - Acetophenone carboxylase delta subunit, at 42,243 to 44,000 _04656 MPMX19_04657: MPMX19_04657 - 2,3-dimethylmalate lyase, at 43,997 to 44,899 _04657 MPMX19_04658: MPMX19_04658 - hypothetical protein, at 44,901 to 46,328 _04658 MPMX19_04659: MPMX19_04659 - High-affinity branched-chain amino acid transport ATP-binding protein LivF, at 46,355 to 47,068 _04659 MPMX19_04660: MPMX19_04660 - Lipopolysaccharide export system ATP-binding protein LptB, at 47,061 to 47,807 _04660 Position (kb) 44 45 46 47Strain fitness (log2 ratio) -2 -1 0 1 2at 44.036 kb on - strandat 44.037 kb on + strandat 44.037 kb on + strandat 44.037 kb on + strandat 44.037 kb on + strandat 44.037 kb on + strandat 44.037 kb on + strandat 44.037 kb on + strandat 44.037 kb on + strandat 44.037 kb on + strandat 44.037 kb on + strandat 44.037 kb on + strandat 44.037 kb on + strandat 44.037 kb on + strandat 44.038 kb on - strandat 44.038 kb on - strandat 44.038 kb on - strandat 44.038 kb on - strandat 44.038 kb on - strandat 44.038 kb on - strandat 44.038 kb on - strandat 44.038 kb on - strandat 44.038 kb on - strandat 44.151 kb on + strand, within MPMX19_04657at 44.152 kb on - strand, within MPMX19_04657at 44.152 kb on - strand, within MPMX19_04657at 44.152 kb on - strand, within MPMX19_04657at 44.154 kb on + strand, within MPMX19_04657at 44.154 kb on + strand, within MPMX19_04657at 44.154 kb on + strand, within MPMX19_04657at 44.155 kb on - strand, within MPMX19_04657at 44.155 kb on - strand, within MPMX19_04657at 44.155 kb on - strand, within MPMX19_04657at 44.155 kb on - strand, within MPMX19_04657at 44.155 kb on - strand, within MPMX19_04657at 44.155 kb on - strand, within MPMX19_04657at 44.379 kb on + strand, within MPMX19_04657at 44.379 kb on + strand, within MPMX19_04657at 44.379 kb on + strand, within MPMX19_04657at 44.379 kb on + strand, within MPMX19_04657at 44.379 kb on + strand, within MPMX19_04657at 44.379 kb on + strand, within MPMX19_04657at 44.379 kb on + strand, within MPMX19_04657at 44.380 kb on - strand, within MPMX19_04657at 44.380 kb on - strand, within MPMX19_04657at 44.380 kb on - strand, within MPMX19_04657at 44.380 kb on - strand, within MPMX19_04657at 44.637 kb on + strand, within MPMX19_04657at 44.638 kb on - strand, within MPMX19_04657at 44.754 kb on + strand, within MPMX19_04657at 44.754 kb on + strand, within MPMX19_04657at 44.754 kb on + strand, within MPMX19_04657at 44.754 kb on + strand, within MPMX19_04657at 44.754 kb on + strand, within MPMX19_04657at 44.754 kb on + strand, within MPMX19_04657at 44.754 kb on + strand, within MPMX19_04657at 44.755 kb on - strand, within MPMX19_04657at 44.755 kb on - strand, within MPMX19_04657at 44.755 kb on - strand, within MPMX19_04657at 44.755 kb on - strand, within MPMX19_04657at 44.778 kb on + strand, within MPMX19_04657at 44.778 kb on + strand, within MPMX19_04657at 44.779 kb on - strand, within MPMX19_04657at 44.779 kb on - strand, within MPMX19_04657at 44.779 kb on - strand, within MPMX19_04657at 44.779 kb on - strand, within MPMX19_04657at 44.779 kb on - strand, within MPMX19_04657at 44.779 kb on - strand, within MPMX19_04657at 44.779 kb on - strand, within MPMX19_04657at 44.779 kb on - strand, within MPMX19_04657at 44.829 kb on + strandat 44.829 kb on + strandat 44.830 kb on - strandat 44.830 kb on - strandat 44.830 kb on - strandat 44.830 kb on - strandat 44.830 kb on - strandat 45.070 kb on + strand, within MPMX19_04658at 45.070 kb on + strand, within MPMX19_04658at 45.070 kb on + strand, within MPMX19_04658at 45.070 kb on + strand, within MPMX19_04658at 45.071 kb on - strand, within MPMX19_04658at 45.373 kb on + strand, within MPMX19_04658at 45.373 kb on + strand, within MPMX19_04658at 45.373 kb on + strand, within MPMX19_04658at 45.373 kb on + strand, within MPMX19_04658at 45.373 kb on + strand, within MPMX19_04658at 45.373 kb on + strand, within MPMX19_04658at 45.373 kb on + strand, within MPMX19_04658at 45.373 kb on + strand, within MPMX19_04658at 45.373 kb on + strand, within MPMX19_04658at 45.373 kb on + strand, within MPMX19_04658at 45.373 kb on + strand, within MPMX19_04658at 45.373 kb on + strand, within MPMX19_04658at 45.373 kb on + strand, within MPMX19_04658at 45.373 kb on + strand, within MPMX19_04658at 45.373 kb on + strand, within MPMX19_04658at 45.373 kb on + strand, within MPMX19_04658at 45.373 kb on + strand, within MPMX19_04658at 45.373 kb on + strand, within MPMX19_04658at 45.373 kb on + strand, within MPMX19_04658at 45.373 kb on + strand, within MPMX19_04658at 45.373 kb on + strand, within MPMX19_04658at 45.373 kb on + strand, within MPMX19_04658at 45.373 kb on + strand, within MPMX19_04658at 45.373 kb on + strand, within MPMX19_04658at 45.373 kb on + strand, within MPMX19_04658at 45.373 kb on + strand, within MPMX19_04658at 45.373 kb on + strand, within MPMX19_04658at 45.373 kb on + strand, within MPMX19_04658at 45.374 kb on - strand, within MPMX19_04658at 45.374 kb on - strand, within MPMX19_04658at 45.374 kb on - strand, within MPMX19_04658at 45.374 kb on - strand, within MPMX19_04658at 45.374 kb on - strand, within MPMX19_04658at 45.374 kb on - strand, within MPMX19_04658at 45.374 kb on - strand, within MPMX19_04658at 45.374 kb on - strand, within MPMX19_04658at 45.374 kb on - strand, within MPMX19_04658at 45.374 kb on - strand, within MPMX19_04658at 45.374 kb on - strand, within MPMX19_04658at 45.374 kb on - strand, within MPMX19_04658at 45.374 kb on - strand, within MPMX19_04658at 45.374 kb on - strand, within MPMX19_04658at 45.374 kb on - strand, within MPMX19_04658at 45.374 kb on - strand, within MPMX19_04658at 45.374 kb on - strand, within MPMX19_04658at 45.374 kb on - strand, within MPMX19_04658at 45.374 kb on - strand, within MPMX19_04658at 45.374 kb on - strand, within MPMX19_04658at 45.374 kb on - strand, within MPMX19_04658at 45.374 kb on - strand, within MPMX19_04658at 45.374 kb on - strand, within MPMX19_04658at 45.374 kb on - strand, within MPMX19_04658at 45.374 kb on - strand, within MPMX19_04658at 45.374 kb on - strand, within MPMX19_04658at 45.374 kb on - strand, within MPMX19_04658at 45.374 kb on - strand, within MPMX19_04658at 45.374 kb on - strand, within MPMX19_04658at 45.374 kb on - strand, within MPMX19_04658at 45.374 kb on - strand, within MPMX19_04658at 45.469 kb on + strand, within MPMX19_04658at 45.469 kb on + strand, within MPMX19_04658at 45.469 kb on + strand, within MPMX19_04658at 45.470 kb on - strand, within MPMX19_04658at 45.470 kb on - strand, within MPMX19_04658at 45.470 kb on - strand, within MPMX19_04658at 45.496 kb on + strand, within MPMX19_04658at 45.496 kb on + strand, within MPMX19_04658at 45.496 kb on + strand, within MPMX19_04658at 45.496 kb on + strand, within MPMX19_04658at 45.496 kb on + strand, within MPMX19_04658at 45.496 kb on + strand, within MPMX19_04658at 45.497 kb on - strand, within MPMX19_04658at 45.497 kb on - strand, within MPMX19_04658at 45.497 kb on - strand, within MPMX19_04658at 45.497 kb on - strand, within MPMX19_04658at 45.497 kb on - strand, within MPMX19_04658at 45.497 kb on - strand, within MPMX19_04658at 45.667 kb on + strand, within MPMX19_04658at 45.667 kb on + strand, within MPMX19_04658at 45.667 kb on + strand, within MPMX19_04658at 45.880 kb on + strand, within MPMX19_04658at 45.985 kb on + strand, within MPMX19_04658at 45.986 kb on - strand, within MPMX19_04658at 45.986 kb on - strand, within MPMX19_04658at 46.368 kb on + strandat 46.368 kb on + strandat 46.369 kb on - strandat 46.369 kb on - strandat 46.369 kb on - strandat 46.369 kb on - strandat 46.369 kb on - strandat 46.369 kb on - strandat 46.369 kb on - strandat 46.369 kb on - strandat 46.446 kb on + strand, within MPMX19_04659at 46.446 kb on + strand, within MPMX19_04659at 46.446 kb on + strand, within MPMX19_04659at 46.446 kb on + strand, within MPMX19_04659at 46.446 kb on + strand, within MPMX19_04659at 46.446 kb on + strand, within MPMX19_04659at 46.446 kb on + strand, within MPMX19_04659at 46.446 kb on + strand, within MPMX19_04659at 46.446 kb on + strand, within MPMX19_04659at 46.446 kb on + strand, within MPMX19_04659at 46.446 kb on + strand, within MPMX19_04659at 46.446 kb on + strand, within MPMX19_04659at 46.446 kb on + strand, within MPMX19_04659at 46.447 kb on - strand, within MPMX19_04659at 46.447 kb on - strand, within MPMX19_04659at 46.447 kb on - strand, within MPMX19_04659at 46.447 kb on - strand, within MPMX19_04659at 46.447 kb on - strand, within MPMX19_04659at 46.447 kb on - strand, within MPMX19_04659at 46.447 kb on - strand, within MPMX19_04659at 46.447 kb on - strand, within MPMX19_04659at 46.447 kb on - strand, within MPMX19_04659at 46.447 kb on - strand, within MPMX19_04659at 46.447 kb on - strand, within MPMX19_04659at 46.447 kb on - strand, within MPMX19_04659at 46.447 kb on - strand, within MPMX19_04659at 46.447 kb on - strand, within MPMX19_04659at 46.447 kb on - strand, within MPMX19_04659at 47.116 kb on + strandat 47.116 kb on + strandat 47.116 kb on + strandat 47.117 kb on - strandat 47.117 kb on - strandat 47.194 kb on + strand, within MPMX19_04660at 47.194 kb on + strand, within MPMX19_04660at 47.194 kb on + strand, within MPMX19_04660at 47.194 kb on + strand, within MPMX19_04660at 47.194 kb on + strand, within MPMX19_04660at 47.194 kb on + strand, within MPMX19_04660at 47.194 kb on + strand, within MPMX19_04660at 47.194 kb on + strand, within MPMX19_04660at 47.194 kb on + strand, within MPMX19_04660at 47.194 kb on + strand, within MPMX19_04660at 47.194 kb on + strand, within MPMX19_04660at 47.194 kb on + strand, within MPMX19_04660at 47.194 kb on + strand, within MPMX19_04660at 47.195 kb on - strand, within MPMX19_04660at 47.195 kb on - strand, within MPMX19_04660at 47.195 kb on - strand, within MPMX19_04660at 47.195 kb on - strand, within MPMX19_04660at 47.195 kb on - strand, within MPMX19_04660at 47.195 kb on - strand, within MPMX19_04660at 47.195 kb on - strand, within MPMX19_04660at 47.195 kb on - strand, within MPMX19_04660at 47.195 kb on - strand, within MPMX19_04660

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Per-strain Table

Position Strand Gene LocusTag Fraction NF
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44,036 - -0.1
44,037 + -0.4
44,037 + +1.1
44,037 + +0.5
44,037 + +0.1
44,037 + -1.7
44,037 + +0.1
44,037 + -0.3
44,037 + +0.0
44,037 + -0.5
44,037 + -0.3
44,037 + +0.4
44,037 + -0.8
44,037 + -1.3
44,038 - -2.6
44,038 - -0.4
44,038 - +0.3
44,038 - +0.3
44,038 - +0.8
44,038 - +1.1
44,038 - -0.3
44,038 - -0.7
44,038 - -0.9
44,151 + MPMX19_04657 0.17 -0.2
44,152 - MPMX19_04657 0.17 +0.3
44,152 - MPMX19_04657 0.17 -0.3
44,152 - MPMX19_04657 0.17 +1.7
44,154 + MPMX19_04657 0.17 +0.5
44,154 + MPMX19_04657 0.17 +0.0
44,154 + MPMX19_04657 0.17 -0.9
44,155 - MPMX19_04657 0.17 +0.5
44,155 - MPMX19_04657 0.17 +1.6
44,155 - MPMX19_04657 0.17 -0.9
44,155 - MPMX19_04657 0.17 +0.9
44,155 - MPMX19_04657 0.17 +0.3
44,155 - MPMX19_04657 0.17 +0.1
44,379 + MPMX19_04657 0.42 -0.5
44,379 + MPMX19_04657 0.42 +0.4
44,379 + MPMX19_04657 0.42 +2.0
44,379 + MPMX19_04657 0.42 +0.1
44,379 + MPMX19_04657 0.42 +0.1
44,379 + MPMX19_04657 0.42 +0.1
44,379 + MPMX19_04657 0.42 -0.3
44,380 - MPMX19_04657 0.42 -0.5
44,380 - MPMX19_04657 0.42 +0.1
44,380 - MPMX19_04657 0.42 +0.3
44,380 - MPMX19_04657 0.42 +0.1
44,637 + MPMX19_04657 0.71 -0.9
44,638 - MPMX19_04657 0.71 +0.1
44,754 + MPMX19_04657 0.84 +1.0
44,754 + MPMX19_04657 0.84 -0.4
44,754 + MPMX19_04657 0.84 -0.3
44,754 + MPMX19_04657 0.84 -0.8
44,754 + MPMX19_04657 0.84 +1.8
44,754 + MPMX19_04657 0.84 -0.0
44,754 + MPMX19_04657 0.84 -0.8
44,755 - MPMX19_04657 0.84 +1.7
44,755 - MPMX19_04657 0.84 +0.7
44,755 - MPMX19_04657 0.84 +0.2
44,755 - MPMX19_04657 0.84 -0.0
44,778 + MPMX19_04657 0.86 +0.7
44,778 + MPMX19_04657 0.86 +0.3
44,779 - MPMX19_04657 0.87 +1.4
44,779 - MPMX19_04657 0.87 -0.3
44,779 - MPMX19_04657 0.87 -1.0
44,779 - MPMX19_04657 0.87 -0.3
44,779 - MPMX19_04657 0.87 +1.7
44,779 - MPMX19_04657 0.87 -0.3
44,779 - MPMX19_04657 0.87 -2.6
44,779 - MPMX19_04657 0.87 -1.2
44,829 + -0.4
44,829 + -0.3
44,830 - -1.1
44,830 - -0.6
44,830 - +0.3
44,830 - -1.1
44,830 - -0.4
45,070 + MPMX19_04658 0.12 -1.5
45,070 + MPMX19_04658 0.12 -0.2
45,070 + MPMX19_04658 0.12 -0.6
45,070 + MPMX19_04658 0.12 -0.1
45,071 - MPMX19_04658 0.12 -0.6
45,373 + MPMX19_04658 0.33 -1.2
45,373 + MPMX19_04658 0.33 +0.0
45,373 + MPMX19_04658 0.33 -1.3
45,373 + MPMX19_04658 0.33 -0.3
45,373 + MPMX19_04658 0.33 +2.3
45,373 + MPMX19_04658 0.33 -0.5
45,373 + MPMX19_04658 0.33 +0.1
45,373 + MPMX19_04658 0.33 -0.9
45,373 + MPMX19_04658 0.33 -0.4
45,373 + MPMX19_04658 0.33 +1.7
45,373 + MPMX19_04658 0.33 -0.3
45,373 + MPMX19_04658 0.33 -0.1
45,373 + MPMX19_04658 0.33 +1.7
45,373 + MPMX19_04658 0.33 +1.4
45,373 + MPMX19_04658 0.33 -0.1
45,373 + MPMX19_04658 0.33 -0.6
45,373 + MPMX19_04658 0.33 +0.1
45,373 + MPMX19_04658 0.33 +0.4
45,373 + MPMX19_04658 0.33 +0.2
45,373 + MPMX19_04658 0.33 +0.6
45,373 + MPMX19_04658 0.33 -1.3
45,373 + MPMX19_04658 0.33 -0.1
45,373 + MPMX19_04658 0.33 -2.1
45,373 + MPMX19_04658 0.33 -0.1
45,373 + MPMX19_04658 0.33 -0.1
45,373 + MPMX19_04658 0.33 +0.8
45,373 + MPMX19_04658 0.33 -0.3
45,373 + MPMX19_04658 0.33 -0.2
45,374 - MPMX19_04658 0.33 +0.5
45,374 - MPMX19_04658 0.33 -0.9
45,374 - MPMX19_04658 0.33 +0.4
45,374 - MPMX19_04658 0.33 +0.7
45,374 - MPMX19_04658 0.33 -0.1
45,374 - MPMX19_04658 0.33 -2.0
45,374 - MPMX19_04658 0.33 +1.3
45,374 - MPMX19_04658 0.33 -1.7
45,374 - MPMX19_04658 0.33 +2.7
45,374 - MPMX19_04658 0.33 +0.7
45,374 - MPMX19_04658 0.33 -1.7
45,374 - MPMX19_04658 0.33 -1.0
45,374 - MPMX19_04658 0.33 -0.4
45,374 - MPMX19_04658 0.33 +0.1
45,374 - MPMX19_04658 0.33 +0.3
45,374 - MPMX19_04658 0.33 -0.4
45,374 - MPMX19_04658 0.33 -0.4
45,374 - MPMX19_04658 0.33 +0.6
45,374 - MPMX19_04658 0.33 +1.3
45,374 - MPMX19_04658 0.33 +0.3
45,374 - MPMX19_04658 0.33 -1.3
45,374 - MPMX19_04658 0.33 -0.3
45,374 - MPMX19_04658 0.33 -0.7
45,374 - MPMX19_04658 0.33 +0.3
45,374 - MPMX19_04658 0.33 +0.4
45,374 - MPMX19_04658 0.33 +0.1
45,374 - MPMX19_04658 0.33 +0.1
45,374 - MPMX19_04658 0.33 -1.2
45,374 - MPMX19_04658 0.33 -0.4
45,374 - MPMX19_04658 0.33 +0.2
45,374 - MPMX19_04658 0.33 -0.8
45,469 + MPMX19_04658 0.40 -1.1
45,469 + MPMX19_04658 0.40 -0.1
45,469 + MPMX19_04658 0.40 -1.1
45,470 - MPMX19_04658 0.40 -0.3
45,470 - MPMX19_04658 0.40 -1.6
45,470 - MPMX19_04658 0.40 -0.5
45,496 + MPMX19_04658 0.42 +0.2
45,496 + MPMX19_04658 0.42 -1.3
45,496 + MPMX19_04658 0.42 +0.8
45,496 + MPMX19_04658 0.42 -0.7
45,496 + MPMX19_04658 0.42 -1.5
45,496 + MPMX19_04658 0.42 -0.7
45,497 - MPMX19_04658 0.42 +0.5
45,497 - MPMX19_04658 0.42 -0.2
45,497 - MPMX19_04658 0.42 +0.7
45,497 - MPMX19_04658 0.42 -1.3
45,497 - MPMX19_04658 0.42 -0.7
45,497 - MPMX19_04658 0.42 +0.9
45,667 + MPMX19_04658 0.54 +1.1
45,667 + MPMX19_04658 0.54 +0.8
45,667 + MPMX19_04658 0.54 -0.5
45,880 + MPMX19_04658 0.69 +0.3
45,985 + MPMX19_04658 0.76 -0.7
45,986 - MPMX19_04658 0.76 +0.2
45,986 - MPMX19_04658 0.76 +0.5
46,368 + -0.7
46,368 + -1.6
46,369 - -0.9
46,369 - +0.2
46,369 - -0.6
46,369 - +1.3
46,369 - -1.7
46,369 - -0.1
46,369 - +1.2
46,369 - -0.6
46,446 + MPMX19_04659 0.13 -0.6
46,446 + MPMX19_04659 0.13 +0.1
46,446 + MPMX19_04659 0.13 -1.4
46,446 + MPMX19_04659 0.13 -0.0
46,446 + MPMX19_04659 0.13 -0.3
46,446 + MPMX19_04659 0.13 -0.2
46,446 + MPMX19_04659 0.13 +0.1
46,446 + MPMX19_04659 0.13 -0.4
46,446 + MPMX19_04659 0.13 -0.3
46,446 + MPMX19_04659 0.13 +0.0
46,446 + MPMX19_04659 0.13 -1.2
46,446 + MPMX19_04659 0.13 -0.7
46,446 + MPMX19_04659 0.13 +2.0
46,447 - MPMX19_04659 0.13 -0.9
46,447 - MPMX19_04659 0.13 -0.8
46,447 - MPMX19_04659 0.13 -1.6
46,447 - MPMX19_04659 0.13 -0.2
46,447 - MPMX19_04659 0.13 -1.3
46,447 - MPMX19_04659 0.13 +0.2
46,447 - MPMX19_04659 0.13 -0.9
46,447 - MPMX19_04659 0.13 -2.2
46,447 - MPMX19_04659 0.13 -0.9
46,447 - MPMX19_04659 0.13 -0.1
46,447 - MPMX19_04659 0.13 -0.9
46,447 - MPMX19_04659 0.13 -1.5
46,447 - MPMX19_04659 0.13 -1.0
46,447 - MPMX19_04659 0.13 -0.7
46,447 - MPMX19_04659 0.13 +0.4
47,116 + +0.1
47,116 + +1.7
47,116 + -0.8
47,117 - -1.1
47,117 - +0.7
47,194 + MPMX19_04660 0.18 -0.9
47,194 + MPMX19_04660 0.18 -0.9
47,194 + MPMX19_04660 0.18 +1.1
47,194 + MPMX19_04660 0.18 -0.1
47,194 + MPMX19_04660 0.18 +1.3
47,194 + MPMX19_04660 0.18 +0.1
47,194 + MPMX19_04660 0.18 +0.3
47,194 + MPMX19_04660 0.18 +0.1
47,194 + MPMX19_04660 0.18 -0.3
47,194 + MPMX19_04660 0.18 -1.9
47,194 + MPMX19_04660 0.18 -0.9
47,194 + MPMX19_04660 0.18 -2.6
47,194 + MPMX19_04660 0.18 -1.1
47,195 - MPMX19_04660 0.18 -0.5
47,195 - MPMX19_04660 0.18 -1.8
47,195 - MPMX19_04660 0.18 +0.4
47,195 - MPMX19_04660 0.18 -0.5
47,195 - MPMX19_04660 0.18 -0.7
47,195 - MPMX19_04660 0.18 -0.3
47,195 - MPMX19_04660 0.18 -0.3
47,195 - MPMX19_04660 0.18 -2.1
47,195 - MPMX19_04660 0.18 +0.9

Or see this region's nucleotide sequence