Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_04656

Experiment: NF

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX19_04655 and MPMX19_04656 are separated by 20 nucleotidesMPMX19_04656 and MPMX19_04657 overlap by 4 nucleotidesMPMX19_04657 and MPMX19_04658 are separated by 1 nucleotides MPMX19_04655: MPMX19_04655 - Acetophenone carboxylase gamma subunit, at 40,135 to 42,222 _04655 MPMX19_04656: MPMX19_04656 - Acetophenone carboxylase delta subunit, at 42,243 to 44,000 _04656 MPMX19_04657: MPMX19_04657 - 2,3-dimethylmalate lyase, at 43,997 to 44,899 _04657 MPMX19_04658: MPMX19_04658 - hypothetical protein, at 44,901 to 46,328 _04658 Position (kb) 42 43 44 45Strain fitness (log2 ratio) -2 -1 0 1 2at 41.549 kb on + strand, within MPMX19_04655at 41.549 kb on + strand, within MPMX19_04655at 41.549 kb on + strand, within MPMX19_04655at 41.550 kb on - strand, within MPMX19_04655at 41.550 kb on - strand, within MPMX19_04655at 41.550 kb on - strand, within MPMX19_04655at 41.550 kb on - strand, within MPMX19_04655at 41.550 kb on - strand, within MPMX19_04655at 41.550 kb on - strand, within MPMX19_04655at 41.573 kb on + strand, within MPMX19_04655at 41.573 kb on + strand, within MPMX19_04655at 41.573 kb on + strand, within MPMX19_04655at 41.574 kb on - strand, within MPMX19_04655at 41.711 kb on + strand, within MPMX19_04655at 41.712 kb on - strand, within MPMX19_04655at 41.712 kb on - strand, within MPMX19_04655at 41.712 kb on - strand, within MPMX19_04655at 41.712 kb on - strand, within MPMX19_04655at 41.712 kb on - strand, within MPMX19_04655at 41.712 kb on - strand, within MPMX19_04655at 41.850 kb on + strand, within MPMX19_04655at 41.850 kb on + strand, within MPMX19_04655at 41.851 kb on - strand, within MPMX19_04655at 41.851 kb on - strand, within MPMX19_04655at 41.851 kb on - strand, within MPMX19_04655at 41.851 kb on - strand, within MPMX19_04655at 42.134 kb on + strandat 42.210 kb on + strandat 42.210 kb on + strandat 42.211 kb on - strandat 42.211 kb on - strandat 42.211 kb on - strandat 42.211 kb on - strandat 42.319 kb on + strandat 42.319 kb on + strandat 42.320 kb on - strandat 42.625 kb on + strand, within MPMX19_04656at 42.625 kb on + strand, within MPMX19_04656at 42.625 kb on + strand, within MPMX19_04656at 42.625 kb on + strand, within MPMX19_04656at 42.626 kb on - strand, within MPMX19_04656at 42.626 kb on - strand, within MPMX19_04656at 42.626 kb on - strand, within MPMX19_04656at 42.626 kb on - strand, within MPMX19_04656at 42.626 kb on - strand, within MPMX19_04656at 42.875 kb on + strand, within MPMX19_04656at 42.875 kb on + strand, within MPMX19_04656at 42.875 kb on + strand, within MPMX19_04656at 42.876 kb on - strand, within MPMX19_04656at 42.876 kb on - strand, within MPMX19_04656at 42.876 kb on - strand, within MPMX19_04656at 42.876 kb on - strand, within MPMX19_04656at 42.967 kb on + strand, within MPMX19_04656at 42.967 kb on + strand, within MPMX19_04656at 42.968 kb on - strand, within MPMX19_04656at 42.968 kb on - strand, within MPMX19_04656at 42.968 kb on - strand, within MPMX19_04656at 43.090 kb on + strand, within MPMX19_04656at 43.090 kb on + strand, within MPMX19_04656at 43.090 kb on + strand, within MPMX19_04656at 43.090 kb on + strand, within MPMX19_04656at 43.090 kb on + strand, within MPMX19_04656at 43.090 kb on + strand, within MPMX19_04656at 43.091 kb on - strand, within MPMX19_04656at 43.091 kb on - strand, within MPMX19_04656at 43.091 kb on - strand, within MPMX19_04656at 43.091 kb on - strand, within MPMX19_04656at 43.091 kb on - strand, within MPMX19_04656at 43.091 kb on - strand, within MPMX19_04656at 43.091 kb on - strand, within MPMX19_04656at 43.091 kb on - strand, within MPMX19_04656at 43.114 kb on + strand, within MPMX19_04656at 43.115 kb on - strand, within MPMX19_04656at 43.243 kb on + strand, within MPMX19_04656at 43.244 kb on - strand, within MPMX19_04656at 43.244 kb on - strand, within MPMX19_04656at 43.244 kb on - strand, within MPMX19_04656at 43.244 kb on - strand, within MPMX19_04656at 43.258 kb on + strand, within MPMX19_04656at 43.258 kb on + strand, within MPMX19_04656at 43.258 kb on + strand, within MPMX19_04656at 43.259 kb on - strand, within MPMX19_04656at 43.259 kb on - strand, within MPMX19_04656at 43.259 kb on - strand, within MPMX19_04656at 43.259 kb on - strand, within MPMX19_04656at 43.259 kb on - strand, within MPMX19_04656at 43.426 kb on + strand, within MPMX19_04656at 43.426 kb on + strand, within MPMX19_04656at 43.426 kb on + strand, within MPMX19_04656at 43.426 kb on + strand, within MPMX19_04656at 43.426 kb on + strand, within MPMX19_04656at 43.426 kb on + strand, within MPMX19_04656at 43.426 kb on + strand, within MPMX19_04656at 43.426 kb on + strand, within MPMX19_04656at 43.427 kb on - strand, within MPMX19_04656at 43.427 kb on - strand, within MPMX19_04656at 43.427 kb on - strand, within MPMX19_04656at 43.427 kb on - strand, within MPMX19_04656at 43.427 kb on - strand, within MPMX19_04656at 43.684 kb on + strand, within MPMX19_04656at 43.684 kb on + strand, within MPMX19_04656at 43.685 kb on - strand, within MPMX19_04656at 43.685 kb on - strand, within MPMX19_04656at 43.837 kb on + strandat 43.837 kb on + strandat 43.837 kb on + strandat 43.838 kb on - strandat 43.838 kb on - strandat 43.838 kb on - strandat 43.838 kb on - strandat 43.838 kb on - strandat 43.838 kb on - strandat 43.894 kb on + strandat 44.036 kb on - strandat 44.037 kb on + strandat 44.037 kb on + strandat 44.037 kb on + strandat 44.037 kb on + strandat 44.037 kb on + strandat 44.037 kb on + strandat 44.037 kb on + strandat 44.037 kb on + strandat 44.037 kb on + strandat 44.037 kb on + strandat 44.037 kb on + strandat 44.037 kb on + strandat 44.037 kb on + strandat 44.038 kb on - strandat 44.038 kb on - strandat 44.038 kb on - strandat 44.038 kb on - strandat 44.038 kb on - strandat 44.038 kb on - strandat 44.038 kb on - strandat 44.038 kb on - strandat 44.038 kb on - strandat 44.151 kb on + strand, within MPMX19_04657at 44.152 kb on - strand, within MPMX19_04657at 44.152 kb on - strand, within MPMX19_04657at 44.152 kb on - strand, within MPMX19_04657at 44.154 kb on + strand, within MPMX19_04657at 44.154 kb on + strand, within MPMX19_04657at 44.154 kb on + strand, within MPMX19_04657at 44.155 kb on - strand, within MPMX19_04657at 44.155 kb on - strand, within MPMX19_04657at 44.155 kb on - strand, within MPMX19_04657at 44.155 kb on - strand, within MPMX19_04657at 44.155 kb on - strand, within MPMX19_04657at 44.155 kb on - strand, within MPMX19_04657at 44.379 kb on + strand, within MPMX19_04657at 44.379 kb on + strand, within MPMX19_04657at 44.379 kb on + strand, within MPMX19_04657at 44.379 kb on + strand, within MPMX19_04657at 44.379 kb on + strand, within MPMX19_04657at 44.379 kb on + strand, within MPMX19_04657at 44.379 kb on + strand, within MPMX19_04657at 44.380 kb on - strand, within MPMX19_04657at 44.380 kb on - strand, within MPMX19_04657at 44.380 kb on - strand, within MPMX19_04657at 44.380 kb on - strand, within MPMX19_04657at 44.637 kb on + strand, within MPMX19_04657at 44.638 kb on - strand, within MPMX19_04657at 44.754 kb on + strand, within MPMX19_04657at 44.754 kb on + strand, within MPMX19_04657at 44.754 kb on + strand, within MPMX19_04657at 44.754 kb on + strand, within MPMX19_04657at 44.754 kb on + strand, within MPMX19_04657at 44.754 kb on + strand, within MPMX19_04657at 44.754 kb on + strand, within MPMX19_04657at 44.755 kb on - strand, within MPMX19_04657at 44.755 kb on - strand, within MPMX19_04657at 44.755 kb on - strand, within MPMX19_04657at 44.755 kb on - strand, within MPMX19_04657at 44.778 kb on + strand, within MPMX19_04657at 44.778 kb on + strand, within MPMX19_04657at 44.779 kb on - strand, within MPMX19_04657at 44.779 kb on - strand, within MPMX19_04657at 44.779 kb on - strand, within MPMX19_04657at 44.779 kb on - strand, within MPMX19_04657at 44.779 kb on - strand, within MPMX19_04657at 44.779 kb on - strand, within MPMX19_04657at 44.779 kb on - strand, within MPMX19_04657at 44.779 kb on - strand, within MPMX19_04657at 44.829 kb on + strandat 44.829 kb on + strandat 44.830 kb on - strandat 44.830 kb on - strandat 44.830 kb on - strandat 44.830 kb on - strandat 44.830 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction NF
remove
41,549 + MPMX19_04655 0.68 -1.3
41,549 + MPMX19_04655 0.68 -0.9
41,549 + MPMX19_04655 0.68 +0.7
41,550 - MPMX19_04655 0.68 -1.5
41,550 - MPMX19_04655 0.68 -0.8
41,550 - MPMX19_04655 0.68 -1.5
41,550 - MPMX19_04655 0.68 -0.4
41,550 - MPMX19_04655 0.68 -1.4
41,550 - MPMX19_04655 0.68 -1.8
41,573 + MPMX19_04655 0.69 -1.0
41,573 + MPMX19_04655 0.69 -0.9
41,573 + MPMX19_04655 0.69 +0.3
41,574 - MPMX19_04655 0.69 -0.8
41,711 + MPMX19_04655 0.75 -0.6
41,712 - MPMX19_04655 0.76 -0.7
41,712 - MPMX19_04655 0.76 -0.2
41,712 - MPMX19_04655 0.76 +0.3
41,712 - MPMX19_04655 0.76 -0.7
41,712 - MPMX19_04655 0.76 +0.3
41,712 - MPMX19_04655 0.76 +0.1
41,850 + MPMX19_04655 0.82 +0.2
41,850 + MPMX19_04655 0.82 -0.7
41,851 - MPMX19_04655 0.82 +1.0
41,851 - MPMX19_04655 0.82 -0.4
41,851 - MPMX19_04655 0.82 -0.1
41,851 - MPMX19_04655 0.82 +0.6
42,134 + -0.4
42,210 + -1.2
42,210 + -0.7
42,211 - +0.1
42,211 - +0.6
42,211 - -0.1
42,211 - +1.0
42,319 + +0.0
42,319 + +0.1
42,320 - +0.4
42,625 + MPMX19_04656 0.22 +1.7
42,625 + MPMX19_04656 0.22 +0.8
42,625 + MPMX19_04656 0.22 -1.7
42,625 + MPMX19_04656 0.22 -0.3
42,626 - MPMX19_04656 0.22 -0.4
42,626 - MPMX19_04656 0.22 -1.5
42,626 - MPMX19_04656 0.22 +0.8
42,626 - MPMX19_04656 0.22 -2.5
42,626 - MPMX19_04656 0.22 -0.1
42,875 + MPMX19_04656 0.36 -2.7
42,875 + MPMX19_04656 0.36 +0.7
42,875 + MPMX19_04656 0.36 +0.6
42,876 - MPMX19_04656 0.36 +0.1
42,876 - MPMX19_04656 0.36 +0.1
42,876 - MPMX19_04656 0.36 -1.1
42,876 - MPMX19_04656 0.36 -1.7
42,967 + MPMX19_04656 0.41 -0.3
42,967 + MPMX19_04656 0.41 -0.2
42,968 - MPMX19_04656 0.41 -0.7
42,968 - MPMX19_04656 0.41 +0.1
42,968 - MPMX19_04656 0.41 +0.5
43,090 + MPMX19_04656 0.48 +0.4
43,090 + MPMX19_04656 0.48 -0.8
43,090 + MPMX19_04656 0.48 +0.7
43,090 + MPMX19_04656 0.48 +0.5
43,090 + MPMX19_04656 0.48 -0.4
43,090 + MPMX19_04656 0.48 -0.1
43,091 - MPMX19_04656 0.48 -0.2
43,091 - MPMX19_04656 0.48 -0.1
43,091 - MPMX19_04656 0.48 +1.2
43,091 - MPMX19_04656 0.48 +0.3
43,091 - MPMX19_04656 0.48 +0.1
43,091 - MPMX19_04656 0.48 +0.9
43,091 - MPMX19_04656 0.48 +0.7
43,091 - MPMX19_04656 0.48 -0.3
43,114 + MPMX19_04656 0.50 -0.3
43,115 - MPMX19_04656 0.50 +0.1
43,243 + MPMX19_04656 0.57 -0.1
43,244 - MPMX19_04656 0.57 -0.0
43,244 - MPMX19_04656 0.57 -1.8
43,244 - MPMX19_04656 0.57 +0.7
43,244 - MPMX19_04656 0.57 +0.7
43,258 + MPMX19_04656 0.58 +0.2
43,258 + MPMX19_04656 0.58 -0.7
43,258 + MPMX19_04656 0.58 +0.2
43,259 - MPMX19_04656 0.58 -1.0
43,259 - MPMX19_04656 0.58 +0.5
43,259 - MPMX19_04656 0.58 -0.7
43,259 - MPMX19_04656 0.58 +1.3
43,259 - MPMX19_04656 0.58 -0.7
43,426 + MPMX19_04656 0.67 -0.7
43,426 + MPMX19_04656 0.67 +0.3
43,426 + MPMX19_04656 0.67 -1.1
43,426 + MPMX19_04656 0.67 -1.3
43,426 + MPMX19_04656 0.67 +1.1
43,426 + MPMX19_04656 0.67 +0.4
43,426 + MPMX19_04656 0.67 -1.1
43,426 + MPMX19_04656 0.67 -0.3
43,427 - MPMX19_04656 0.67 -0.7
43,427 - MPMX19_04656 0.67 +0.6
43,427 - MPMX19_04656 0.67 -0.3
43,427 - MPMX19_04656 0.67 +0.3
43,427 - MPMX19_04656 0.67 -1.4
43,684 + MPMX19_04656 0.82 -0.3
43,684 + MPMX19_04656 0.82 +0.7
43,685 - MPMX19_04656 0.82 -0.9
43,685 - MPMX19_04656 0.82 -0.3
43,837 + -0.2
43,837 + -0.1
43,837 + -0.1
43,838 - -2.2
43,838 - -0.5
43,838 - -0.8
43,838 - -0.5
43,838 - +0.9
43,838 - +0.8
43,894 + -1.9
44,036 - -0.1
44,037 + -0.4
44,037 + +1.1
44,037 + +0.5
44,037 + +0.1
44,037 + -1.7
44,037 + +0.1
44,037 + -0.3
44,037 + +0.0
44,037 + -0.5
44,037 + -0.3
44,037 + +0.4
44,037 + -0.8
44,037 + -1.3
44,038 - -2.6
44,038 - -0.4
44,038 - +0.3
44,038 - +0.3
44,038 - +0.8
44,038 - +1.1
44,038 - -0.3
44,038 - -0.7
44,038 - -0.9
44,151 + MPMX19_04657 0.17 -0.2
44,152 - MPMX19_04657 0.17 +0.3
44,152 - MPMX19_04657 0.17 -0.3
44,152 - MPMX19_04657 0.17 +1.7
44,154 + MPMX19_04657 0.17 +0.5
44,154 + MPMX19_04657 0.17 +0.0
44,154 + MPMX19_04657 0.17 -0.9
44,155 - MPMX19_04657 0.17 +0.5
44,155 - MPMX19_04657 0.17 +1.6
44,155 - MPMX19_04657 0.17 -0.9
44,155 - MPMX19_04657 0.17 +0.9
44,155 - MPMX19_04657 0.17 +0.3
44,155 - MPMX19_04657 0.17 +0.1
44,379 + MPMX19_04657 0.42 -0.5
44,379 + MPMX19_04657 0.42 +0.4
44,379 + MPMX19_04657 0.42 +2.0
44,379 + MPMX19_04657 0.42 +0.1
44,379 + MPMX19_04657 0.42 +0.1
44,379 + MPMX19_04657 0.42 +0.1
44,379 + MPMX19_04657 0.42 -0.3
44,380 - MPMX19_04657 0.42 -0.5
44,380 - MPMX19_04657 0.42 +0.1
44,380 - MPMX19_04657 0.42 +0.3
44,380 - MPMX19_04657 0.42 +0.1
44,637 + MPMX19_04657 0.71 -0.9
44,638 - MPMX19_04657 0.71 +0.1
44,754 + MPMX19_04657 0.84 +1.0
44,754 + MPMX19_04657 0.84 -0.4
44,754 + MPMX19_04657 0.84 -0.3
44,754 + MPMX19_04657 0.84 -0.8
44,754 + MPMX19_04657 0.84 +1.8
44,754 + MPMX19_04657 0.84 -0.0
44,754 + MPMX19_04657 0.84 -0.8
44,755 - MPMX19_04657 0.84 +1.7
44,755 - MPMX19_04657 0.84 +0.7
44,755 - MPMX19_04657 0.84 +0.2
44,755 - MPMX19_04657 0.84 -0.0
44,778 + MPMX19_04657 0.86 +0.7
44,778 + MPMX19_04657 0.86 +0.3
44,779 - MPMX19_04657 0.87 +1.4
44,779 - MPMX19_04657 0.87 -0.3
44,779 - MPMX19_04657 0.87 -1.0
44,779 - MPMX19_04657 0.87 -0.3
44,779 - MPMX19_04657 0.87 +1.7
44,779 - MPMX19_04657 0.87 -0.3
44,779 - MPMX19_04657 0.87 -2.6
44,779 - MPMX19_04657 0.87 -1.2
44,829 + -0.4
44,829 + -0.3
44,830 - -1.1
44,830 - -0.6
44,830 - +0.3
44,830 - -1.1
44,830 - -0.4

Or see this region's nucleotide sequence