Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_04655

Experiment: NF

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_04653 and MPMX19_04654 overlap by 4 nucleotidesMPMX19_04654 and MPMX19_04655 overlap by 4 nucleotidesMPMX19_04655 and MPMX19_04656 are separated by 20 nucleotides MPMX19_04653: MPMX19_04653 - Fumarate reductase flavoprotein subunit, at 38,103 to 39,527 _04653 MPMX19_04654: MPMX19_04654 - Isochorismatase family protein YecD, at 39,524 to 40,138 _04654 MPMX19_04655: MPMX19_04655 - Acetophenone carboxylase gamma subunit, at 40,135 to 42,222 _04655 MPMX19_04656: MPMX19_04656 - Acetophenone carboxylase delta subunit, at 42,243 to 44,000 _04656 Position (kb) 40 41 42 43Strain fitness (log2 ratio) -2 -1 0 1 2at 39.503 kb on + strandat 39.504 kb on - strandat 39.774 kb on + strand, within MPMX19_04654at 39.774 kb on + strand, within MPMX19_04654at 39.774 kb on + strand, within MPMX19_04654at 39.774 kb on + strand, within MPMX19_04654at 39.774 kb on + strand, within MPMX19_04654at 39.774 kb on + strand, within MPMX19_04654at 39.774 kb on + strand, within MPMX19_04654at 39.774 kb on + strand, within MPMX19_04654at 39.774 kb on + strand, within MPMX19_04654at 39.774 kb on + strand, within MPMX19_04654at 39.774 kb on + strand, within MPMX19_04654at 39.774 kb on + strand, within MPMX19_04654at 39.774 kb on + strand, within MPMX19_04654at 39.774 kb on + strand, within MPMX19_04654at 39.774 kb on + strand, within MPMX19_04654at 39.774 kb on + strand, within MPMX19_04654at 39.774 kb on + strand, within MPMX19_04654at 39.774 kb on + strand, within MPMX19_04654at 39.774 kb on + strand, within MPMX19_04654at 39.775 kb on - strand, within MPMX19_04654at 39.775 kb on - strand, within MPMX19_04654at 39.775 kb on - strand, within MPMX19_04654at 39.775 kb on - strand, within MPMX19_04654at 39.775 kb on - strand, within MPMX19_04654at 39.775 kb on - strand, within MPMX19_04654at 39.775 kb on - strand, within MPMX19_04654at 39.775 kb on - strand, within MPMX19_04654at 39.775 kb on - strand, within MPMX19_04654at 39.775 kb on - strand, within MPMX19_04654at 39.775 kb on - strand, within MPMX19_04654at 39.775 kb on - strand, within MPMX19_04654at 39.775 kb on - strand, within MPMX19_04654at 39.775 kb on - strand, within MPMX19_04654at 39.775 kb on - strand, within MPMX19_04654at 39.775 kb on - strand, within MPMX19_04654at 39.775 kb on - strand, within MPMX19_04654at 39.775 kb on - strand, within MPMX19_04654at 40.053 kb on + strand, within MPMX19_04654at 40.054 kb on - strand, within MPMX19_04654at 40.054 kb on - strand, within MPMX19_04654at 40.123 kb on + strandat 40.280 kb on + strandat 40.280 kb on + strandat 40.281 kb on - strandat 40.334 kb on + strandat 40.334 kb on + strandat 40.334 kb on + strandat 40.334 kb on + strandat 40.334 kb on + strandat 40.335 kb on - strandat 40.335 kb on - strandat 40.335 kb on - strandat 40.335 kb on - strandat 40.472 kb on + strand, within MPMX19_04655at 40.472 kb on + strand, within MPMX19_04655at 40.472 kb on + strand, within MPMX19_04655at 40.472 kb on + strand, within MPMX19_04655at 40.473 kb on - strand, within MPMX19_04655at 40.473 kb on - strand, within MPMX19_04655at 40.473 kb on - strand, within MPMX19_04655at 40.473 kb on - strand, within MPMX19_04655at 40.518 kb on + strand, within MPMX19_04655at 40.577 kb on + strand, within MPMX19_04655at 40.577 kb on + strand, within MPMX19_04655at 40.577 kb on + strand, within MPMX19_04655at 40.577 kb on + strand, within MPMX19_04655at 40.577 kb on + strand, within MPMX19_04655at 40.577 kb on + strand, within MPMX19_04655at 40.577 kb on + strand, within MPMX19_04655at 40.577 kb on + strand, within MPMX19_04655at 40.577 kb on + strand, within MPMX19_04655at 40.577 kb on + strand, within MPMX19_04655at 40.578 kb on - strand, within MPMX19_04655at 40.578 kb on - strand, within MPMX19_04655at 40.578 kb on - strand, within MPMX19_04655at 40.578 kb on - strand, within MPMX19_04655at 40.578 kb on - strand, within MPMX19_04655at 40.578 kb on - strand, within MPMX19_04655at 40.578 kb on - strand, within MPMX19_04655at 40.578 kb on - strand, within MPMX19_04655at 40.578 kb on - strand, within MPMX19_04655at 41.132 kb on + strand, within MPMX19_04655at 41.132 kb on + strand, within MPMX19_04655at 41.133 kb on - strand, within MPMX19_04655at 41.133 kb on - strand, within MPMX19_04655at 41.549 kb on + strand, within MPMX19_04655at 41.549 kb on + strand, within MPMX19_04655at 41.549 kb on + strand, within MPMX19_04655at 41.550 kb on - strand, within MPMX19_04655at 41.550 kb on - strand, within MPMX19_04655at 41.550 kb on - strand, within MPMX19_04655at 41.550 kb on - strand, within MPMX19_04655at 41.550 kb on - strand, within MPMX19_04655at 41.550 kb on - strand, within MPMX19_04655at 41.573 kb on + strand, within MPMX19_04655at 41.573 kb on + strand, within MPMX19_04655at 41.573 kb on + strand, within MPMX19_04655at 41.574 kb on - strand, within MPMX19_04655at 41.711 kb on + strand, within MPMX19_04655at 41.712 kb on - strand, within MPMX19_04655at 41.712 kb on - strand, within MPMX19_04655at 41.712 kb on - strand, within MPMX19_04655at 41.712 kb on - strand, within MPMX19_04655at 41.712 kb on - strand, within MPMX19_04655at 41.712 kb on - strand, within MPMX19_04655at 41.850 kb on + strand, within MPMX19_04655at 41.850 kb on + strand, within MPMX19_04655at 41.851 kb on - strand, within MPMX19_04655at 41.851 kb on - strand, within MPMX19_04655at 41.851 kb on - strand, within MPMX19_04655at 41.851 kb on - strand, within MPMX19_04655at 42.134 kb on + strandat 42.210 kb on + strandat 42.210 kb on + strandat 42.211 kb on - strandat 42.211 kb on - strandat 42.211 kb on - strandat 42.211 kb on - strandat 42.319 kb on + strandat 42.319 kb on + strandat 42.320 kb on - strandat 42.625 kb on + strand, within MPMX19_04656at 42.625 kb on + strand, within MPMX19_04656at 42.625 kb on + strand, within MPMX19_04656at 42.625 kb on + strand, within MPMX19_04656at 42.626 kb on - strand, within MPMX19_04656at 42.626 kb on - strand, within MPMX19_04656at 42.626 kb on - strand, within MPMX19_04656at 42.626 kb on - strand, within MPMX19_04656at 42.626 kb on - strand, within MPMX19_04656at 42.875 kb on + strand, within MPMX19_04656at 42.875 kb on + strand, within MPMX19_04656at 42.875 kb on + strand, within MPMX19_04656at 42.876 kb on - strand, within MPMX19_04656at 42.876 kb on - strand, within MPMX19_04656at 42.876 kb on - strand, within MPMX19_04656at 42.876 kb on - strand, within MPMX19_04656at 42.967 kb on + strand, within MPMX19_04656at 42.967 kb on + strand, within MPMX19_04656at 42.968 kb on - strand, within MPMX19_04656at 42.968 kb on - strand, within MPMX19_04656at 42.968 kb on - strand, within MPMX19_04656at 43.090 kb on + strand, within MPMX19_04656at 43.090 kb on + strand, within MPMX19_04656at 43.090 kb on + strand, within MPMX19_04656at 43.090 kb on + strand, within MPMX19_04656at 43.090 kb on + strand, within MPMX19_04656at 43.090 kb on + strand, within MPMX19_04656at 43.091 kb on - strand, within MPMX19_04656at 43.091 kb on - strand, within MPMX19_04656at 43.091 kb on - strand, within MPMX19_04656at 43.091 kb on - strand, within MPMX19_04656at 43.091 kb on - strand, within MPMX19_04656at 43.091 kb on - strand, within MPMX19_04656at 43.091 kb on - strand, within MPMX19_04656at 43.091 kb on - strand, within MPMX19_04656at 43.114 kb on + strand, within MPMX19_04656at 43.115 kb on - strand, within MPMX19_04656

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Per-strain Table

Position Strand Gene LocusTag Fraction NF
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39,503 + -1.9
39,504 - -1.3
39,774 + MPMX19_04654 0.41 +0.7
39,774 + MPMX19_04654 0.41 -0.5
39,774 + MPMX19_04654 0.41 +0.8
39,774 + MPMX19_04654 0.41 -0.7
39,774 + MPMX19_04654 0.41 -0.7
39,774 + MPMX19_04654 0.41 +0.0
39,774 + MPMX19_04654 0.41 -0.3
39,774 + MPMX19_04654 0.41 -0.5
39,774 + MPMX19_04654 0.41 +0.3
39,774 + MPMX19_04654 0.41 +0.4
39,774 + MPMX19_04654 0.41 -0.5
39,774 + MPMX19_04654 0.41 +0.2
39,774 + MPMX19_04654 0.41 +0.3
39,774 + MPMX19_04654 0.41 -0.2
39,774 + MPMX19_04654 0.41 -1.6
39,774 + MPMX19_04654 0.41 -1.7
39,774 + MPMX19_04654 0.41 +1.0
39,774 + MPMX19_04654 0.41 -0.2
39,774 + MPMX19_04654 0.41 -0.7
39,775 - MPMX19_04654 0.41 -0.5
39,775 - MPMX19_04654 0.41 -2.4
39,775 - MPMX19_04654 0.41 -0.3
39,775 - MPMX19_04654 0.41 -1.9
39,775 - MPMX19_04654 0.41 -1.2
39,775 - MPMX19_04654 0.41 +0.8
39,775 - MPMX19_04654 0.41 +0.7
39,775 - MPMX19_04654 0.41 -1.7
39,775 - MPMX19_04654 0.41 -1.4
39,775 - MPMX19_04654 0.41 -1.7
39,775 - MPMX19_04654 0.41 -2.3
39,775 - MPMX19_04654 0.41 +2.2
39,775 - MPMX19_04654 0.41 -1.8
39,775 - MPMX19_04654 0.41 -0.8
39,775 - MPMX19_04654 0.41 +0.3
39,775 - MPMX19_04654 0.41 -1.3
39,775 - MPMX19_04654 0.41 -0.4
39,775 - MPMX19_04654 0.41 +0.1
40,053 + MPMX19_04654 0.86 -0.3
40,054 - MPMX19_04654 0.86 -0.2
40,054 - MPMX19_04654 0.86 +0.7
40,123 + -0.9
40,280 + -1.2
40,280 + -1.2
40,281 - -0.3
40,334 + +1.7
40,334 + -0.3
40,334 + -0.7
40,334 + -1.1
40,334 + +0.9
40,335 - +0.5
40,335 - -0.8
40,335 - -0.1
40,335 - +2.3
40,472 + MPMX19_04655 0.16 -0.9
40,472 + MPMX19_04655 0.16 +0.3
40,472 + MPMX19_04655 0.16 +0.6
40,472 + MPMX19_04655 0.16 -0.5
40,473 - MPMX19_04655 0.16 +0.2
40,473 - MPMX19_04655 0.16 +0.1
40,473 - MPMX19_04655 0.16 -0.4
40,473 - MPMX19_04655 0.16 +1.0
40,518 + MPMX19_04655 0.18 -0.3
40,577 + MPMX19_04655 0.21 +1.3
40,577 + MPMX19_04655 0.21 -0.3
40,577 + MPMX19_04655 0.21 +1.0
40,577 + MPMX19_04655 0.21 -1.5
40,577 + MPMX19_04655 0.21 -1.3
40,577 + MPMX19_04655 0.21 -1.5
40,577 + MPMX19_04655 0.21 -0.3
40,577 + MPMX19_04655 0.21 -0.0
40,577 + MPMX19_04655 0.21 +0.1
40,577 + MPMX19_04655 0.21 -0.7
40,578 - MPMX19_04655 0.21 -0.5
40,578 - MPMX19_04655 0.21 -0.5
40,578 - MPMX19_04655 0.21 +0.1
40,578 - MPMX19_04655 0.21 -1.0
40,578 - MPMX19_04655 0.21 -0.6
40,578 - MPMX19_04655 0.21 +0.1
40,578 - MPMX19_04655 0.21 -1.1
40,578 - MPMX19_04655 0.21 -0.3
40,578 - MPMX19_04655 0.21 +0.5
41,132 + MPMX19_04655 0.48 +1.2
41,132 + MPMX19_04655 0.48 -0.4
41,133 - MPMX19_04655 0.48 +1.1
41,133 - MPMX19_04655 0.48 -0.1
41,549 + MPMX19_04655 0.68 -1.3
41,549 + MPMX19_04655 0.68 -0.9
41,549 + MPMX19_04655 0.68 +0.7
41,550 - MPMX19_04655 0.68 -1.5
41,550 - MPMX19_04655 0.68 -0.8
41,550 - MPMX19_04655 0.68 -1.5
41,550 - MPMX19_04655 0.68 -0.4
41,550 - MPMX19_04655 0.68 -1.4
41,550 - MPMX19_04655 0.68 -1.8
41,573 + MPMX19_04655 0.69 -1.0
41,573 + MPMX19_04655 0.69 -0.9
41,573 + MPMX19_04655 0.69 +0.3
41,574 - MPMX19_04655 0.69 -0.8
41,711 + MPMX19_04655 0.75 -0.6
41,712 - MPMX19_04655 0.76 -0.7
41,712 - MPMX19_04655 0.76 -0.2
41,712 - MPMX19_04655 0.76 +0.3
41,712 - MPMX19_04655 0.76 -0.7
41,712 - MPMX19_04655 0.76 +0.3
41,712 - MPMX19_04655 0.76 +0.1
41,850 + MPMX19_04655 0.82 +0.2
41,850 + MPMX19_04655 0.82 -0.7
41,851 - MPMX19_04655 0.82 +1.0
41,851 - MPMX19_04655 0.82 -0.4
41,851 - MPMX19_04655 0.82 -0.1
41,851 - MPMX19_04655 0.82 +0.6
42,134 + -0.4
42,210 + -1.2
42,210 + -0.7
42,211 - +0.1
42,211 - +0.6
42,211 - -0.1
42,211 - +1.0
42,319 + +0.0
42,319 + +0.1
42,320 - +0.4
42,625 + MPMX19_04656 0.22 +1.7
42,625 + MPMX19_04656 0.22 +0.8
42,625 + MPMX19_04656 0.22 -1.7
42,625 + MPMX19_04656 0.22 -0.3
42,626 - MPMX19_04656 0.22 -0.4
42,626 - MPMX19_04656 0.22 -1.5
42,626 - MPMX19_04656 0.22 +0.8
42,626 - MPMX19_04656 0.22 -2.5
42,626 - MPMX19_04656 0.22 -0.1
42,875 + MPMX19_04656 0.36 -2.7
42,875 + MPMX19_04656 0.36 +0.7
42,875 + MPMX19_04656 0.36 +0.6
42,876 - MPMX19_04656 0.36 +0.1
42,876 - MPMX19_04656 0.36 +0.1
42,876 - MPMX19_04656 0.36 -1.1
42,876 - MPMX19_04656 0.36 -1.7
42,967 + MPMX19_04656 0.41 -0.3
42,967 + MPMX19_04656 0.41 -0.2
42,968 - MPMX19_04656 0.41 -0.7
42,968 - MPMX19_04656 0.41 +0.1
42,968 - MPMX19_04656 0.41 +0.5
43,090 + MPMX19_04656 0.48 +0.4
43,090 + MPMX19_04656 0.48 -0.8
43,090 + MPMX19_04656 0.48 +0.7
43,090 + MPMX19_04656 0.48 +0.5
43,090 + MPMX19_04656 0.48 -0.4
43,090 + MPMX19_04656 0.48 -0.1
43,091 - MPMX19_04656 0.48 -0.2
43,091 - MPMX19_04656 0.48 -0.1
43,091 - MPMX19_04656 0.48 +1.2
43,091 - MPMX19_04656 0.48 +0.3
43,091 - MPMX19_04656 0.48 +0.1
43,091 - MPMX19_04656 0.48 +0.9
43,091 - MPMX19_04656 0.48 +0.7
43,091 - MPMX19_04656 0.48 -0.3
43,114 + MPMX19_04656 0.50 -0.3
43,115 - MPMX19_04656 0.50 +0.1

Or see this region's nucleotide sequence