Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_04640

Experiment: NF

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_04639 and MPMX19_04640 are separated by 720 nucleotidesMPMX19_04640 and MPMX19_04641 are separated by 41 nucleotides MPMX19_04639: MPMX19_04639 - hypothetical protein, at 18,807 to 21,578 _04639 MPMX19_04640: MPMX19_04640 - hypothetical protein, at 22,299 to 23,108 _04640 MPMX19_04641: MPMX19_04641 - hypothetical protein, at 23,150 to 25,207 _04641 Position (kb) 22 23 24Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 21.324 kb on + strandat 21.325 kb on - strandat 21.333 kb on + strandat 21.333 kb on + strandat 21.333 kb on + strandat 21.333 kb on + strandat 21.333 kb on + strandat 21.334 kb on - strandat 21.334 kb on - strandat 21.334 kb on - strandat 21.447 kb on + strandat 21.447 kb on + strandat 21.447 kb on + strandat 21.447 kb on + strandat 21.447 kb on + strandat 21.448 kb on - strandat 21.448 kb on - strandat 21.448 kb on - strandat 21.448 kb on - strandat 21.448 kb on - strandat 21.549 kb on + strandat 21.549 kb on + strandat 21.549 kb on + strandat 21.549 kb on + strandat 21.549 kb on + strandat 21.550 kb on - strandat 21.550 kb on - strandat 21.550 kb on - strandat 21.576 kb on + strandat 21.576 kb on + strandat 21.577 kb on - strandat 21.577 kb on - strandat 21.686 kb on - strandat 21.693 kb on + strandat 21.696 kb on - strandat 21.696 kb on - strandat 21.753 kb on - strandat 21.783 kb on - strandat 21.827 kb on + strandat 21.902 kb on - strandat 22.014 kb on + strandat 22.014 kb on + strandat 22.014 kb on + strandat 22.014 kb on + strandat 22.014 kb on + strandat 22.014 kb on + strandat 22.015 kb on - strandat 22.015 kb on - strandat 22.015 kb on - strandat 22.015 kb on - strandat 22.015 kb on - strandat 22.015 kb on - strandat 22.015 kb on - strandat 22.015 kb on - strandat 22.015 kb on - strandat 22.015 kb on - strandat 22.024 kb on + strandat 22.025 kb on - strandat 22.056 kb on + strandat 22.056 kb on + strandat 22.056 kb on + strandat 22.056 kb on + strandat 22.056 kb on + strandat 22.056 kb on + strandat 22.056 kb on + strandat 22.056 kb on + strandat 22.056 kb on + strandat 22.057 kb on - strandat 22.057 kb on - strandat 22.057 kb on - strandat 22.057 kb on - strandat 22.279 kb on + strandat 22.279 kb on + strandat 22.279 kb on + strandat 22.280 kb on - strandat 22.411 kb on + strand, within MPMX19_04640at 22.411 kb on + strand, within MPMX19_04640at 22.411 kb on + strand, within MPMX19_04640at 22.412 kb on - strand, within MPMX19_04640at 22.412 kb on - strand, within MPMX19_04640at 22.470 kb on + strand, within MPMX19_04640at 22.470 kb on + strand, within MPMX19_04640at 22.470 kb on + strand, within MPMX19_04640at 22.471 kb on - strand, within MPMX19_04640at 22.710 kb on + strand, within MPMX19_04640at 22.711 kb on - strand, within MPMX19_04640at 22.711 kb on - strand, within MPMX19_04640at 22.803 kb on + strand, within MPMX19_04640at 22.803 kb on + strand, within MPMX19_04640at 22.803 kb on + strand, within MPMX19_04640at 22.804 kb on - strand, within MPMX19_04640at 22.804 kb on - strand, within MPMX19_04640at 22.890 kb on + strand, within MPMX19_04640at 23.082 kb on + strandat 23.082 kb on + strandat 23.082 kb on + strandat 23.083 kb on - strandat 23.083 kb on - strandat 23.083 kb on - strandat 23.106 kb on + strandat 23.221 kb on - strandat 23.221 kb on - strandat 23.221 kb on - strandat 23.425 kb on - strand, within MPMX19_04641at 23.439 kb on + strand, within MPMX19_04641at 23.440 kb on - strand, within MPMX19_04641at 23.958 kb on + strand, within MPMX19_04641at 23.958 kb on + strand, within MPMX19_04641at 23.959 kb on - strand, within MPMX19_04641at 23.959 kb on - strand, within MPMX19_04641at 23.967 kb on + strand, within MPMX19_04641at 23.967 kb on + strand, within MPMX19_04641at 23.967 kb on + strand, within MPMX19_04641at 23.967 kb on + strand, within MPMX19_04641at 23.967 kb on + strand, within MPMX19_04641at 23.967 kb on + strand, within MPMX19_04641at 23.967 kb on + strand, within MPMX19_04641at 23.967 kb on + strand, within MPMX19_04641at 23.967 kb on + strand, within MPMX19_04641at 23.967 kb on + strand, within MPMX19_04641at 23.967 kb on + strand, within MPMX19_04641at 23.967 kb on + strand, within MPMX19_04641at 23.968 kb on - strand, within MPMX19_04641at 23.968 kb on - strand, within MPMX19_04641at 23.968 kb on - strand, within MPMX19_04641at 23.968 kb on - strand, within MPMX19_04641at 23.968 kb on - strand, within MPMX19_04641at 23.968 kb on - strand, within MPMX19_04641at 23.968 kb on - strand, within MPMX19_04641at 23.968 kb on - strand, within MPMX19_04641at 23.997 kb on + strand, within MPMX19_04641at 23.997 kb on + strand, within MPMX19_04641at 23.998 kb on - strand, within MPMX19_04641at 23.998 kb on - strand, within MPMX19_04641at 23.998 kb on - strand, within MPMX19_04641at 23.998 kb on - strand, within MPMX19_04641at 23.998 kb on - strand, within MPMX19_04641at 23.998 kb on - strand, within MPMX19_04641at 24.054 kb on + strand, within MPMX19_04641at 24.054 kb on + strand, within MPMX19_04641at 24.055 kb on - strand, within MPMX19_04641at 24.055 kb on - strand, within MPMX19_04641at 24.055 kb on - strand, within MPMX19_04641

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Per-strain Table

Position Strand Gene LocusTag Fraction NF
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21,324 + +0.3
21,325 - -0.5
21,333 + +2.0
21,333 + -1.4
21,333 + -1.4
21,333 + +0.1
21,333 + -0.3
21,334 - +0.7
21,334 - +1.4
21,334 - -0.7
21,447 + +1.5
21,447 + +0.3
21,447 + -0.5
21,447 + +0.2
21,447 + -0.2
21,448 - -0.7
21,448 - -0.7
21,448 - -0.4
21,448 - +2.2
21,448 - -0.6
21,549 + -0.1
21,549 + +0.4
21,549 + -0.2
21,549 + -1.1
21,549 + -0.4
21,550 - +0.3
21,550 - +0.1
21,550 - -0.1
21,576 + -1.2
21,576 + -0.2
21,577 - -1.9
21,577 - +0.0
21,686 - -0.7
21,693 + -1.7
21,696 - -1.1
21,696 - +1.5
21,753 - +0.5
21,783 - -2.3
21,827 + -1.7
21,902 - +0.7
22,014 + -2.5
22,014 + -2.0
22,014 + -1.9
22,014 + +0.4
22,014 + -0.4
22,014 + -0.0
22,015 - -0.1
22,015 - -2.2
22,015 - -0.6
22,015 - -1.3
22,015 - -0.9
22,015 - -0.1
22,015 - -1.1
22,015 - +0.7
22,015 - +0.1
22,015 - +0.3
22,024 + -0.5
22,025 - -1.1
22,056 + -0.8
22,056 + -0.2
22,056 + -0.3
22,056 + -0.1
22,056 + +0.7
22,056 + -0.5
22,056 + -0.5
22,056 + -0.3
22,056 + -0.7
22,057 - -0.3
22,057 - -0.1
22,057 - +0.3
22,057 - +0.1
22,279 + -1.0
22,279 + -1.3
22,279 + +0.3
22,280 - +0.1
22,411 + MPMX19_04640 0.14 -1.2
22,411 + MPMX19_04640 0.14 -2.1
22,411 + MPMX19_04640 0.14 -0.1
22,412 - MPMX19_04640 0.14 -0.3
22,412 - MPMX19_04640 0.14 -0.6
22,470 + MPMX19_04640 0.21 -0.9
22,470 + MPMX19_04640 0.21 -1.0
22,470 + MPMX19_04640 0.21 +0.1
22,471 - MPMX19_04640 0.21 -0.7
22,710 + MPMX19_04640 0.51 -0.6
22,711 - MPMX19_04640 0.51 -0.1
22,711 - MPMX19_04640 0.51 -0.7
22,803 + MPMX19_04640 0.62 +0.4
22,803 + MPMX19_04640 0.62 -1.3
22,803 + MPMX19_04640 0.62 -0.4
22,804 - MPMX19_04640 0.62 +0.7
22,804 - MPMX19_04640 0.62 +0.7
22,890 + MPMX19_04640 0.73 +0.7
23,082 + -0.7
23,082 + -0.1
23,082 + -0.5
23,083 - -2.4
23,083 - -1.1
23,083 - -0.1
23,106 + -0.2
23,221 - -1.1
23,221 - +0.6
23,221 - -0.1
23,425 - MPMX19_04641 0.13 -0.7
23,439 + MPMX19_04641 0.14 -0.4
23,440 - MPMX19_04641 0.14 -1.0
23,958 + MPMX19_04641 0.39 -0.8
23,958 + MPMX19_04641 0.39 +0.5
23,959 - MPMX19_04641 0.39 -1.0
23,959 - MPMX19_04641 0.39 -1.5
23,967 + MPMX19_04641 0.40 -1.3
23,967 + MPMX19_04641 0.40 -2.0
23,967 + MPMX19_04641 0.40 +0.8
23,967 + MPMX19_04641 0.40 -2.3
23,967 + MPMX19_04641 0.40 -1.7
23,967 + MPMX19_04641 0.40 -0.3
23,967 + MPMX19_04641 0.40 +1.7
23,967 + MPMX19_04641 0.40 -1.4
23,967 + MPMX19_04641 0.40 -0.2
23,967 + MPMX19_04641 0.40 -0.9
23,967 + MPMX19_04641 0.40 -1.6
23,967 + MPMX19_04641 0.40 -1.9
23,968 - MPMX19_04641 0.40 +0.5
23,968 - MPMX19_04641 0.40 -0.7
23,968 - MPMX19_04641 0.40 -0.9
23,968 - MPMX19_04641 0.40 -1.0
23,968 - MPMX19_04641 0.40 +0.6
23,968 - MPMX19_04641 0.40 -0.9
23,968 - MPMX19_04641 0.40 -0.3
23,968 - MPMX19_04641 0.40 -0.3
23,997 + MPMX19_04641 0.41 -3.1
23,997 + MPMX19_04641 0.41 -1.6
23,998 - MPMX19_04641 0.41 +0.5
23,998 - MPMX19_04641 0.41 -1.0
23,998 - MPMX19_04641 0.41 -0.4
23,998 - MPMX19_04641 0.41 -0.3
23,998 - MPMX19_04641 0.41 -1.7
23,998 - MPMX19_04641 0.41 -0.8
24,054 + MPMX19_04641 0.44 -1.0
24,054 + MPMX19_04641 0.44 -0.4
24,055 - MPMX19_04641 0.44 +0.5
24,055 - MPMX19_04641 0.44 -0.3
24,055 - MPMX19_04641 0.44 +0.9

Or see this region's nucleotide sequence