Experiment: NF
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_04639 and MPMX19_04640 are separated by 720 nucleotides MPMX19_04640 and MPMX19_04641 are separated by 41 nucleotides
MPMX19_04639: MPMX19_04639 - hypothetical protein, at 18,807 to 21,578
_04639
MPMX19_04640: MPMX19_04640 - hypothetical protein, at 22,299 to 23,108
_04640
MPMX19_04641: MPMX19_04641 - hypothetical protein, at 23,150 to 25,207
_04641
Position (kb)
22
23
24 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 21.324 kb on + strand at 21.325 kb on - strand at 21.333 kb on + strand at 21.333 kb on + strand at 21.333 kb on + strand at 21.333 kb on + strand at 21.333 kb on + strand at 21.334 kb on - strand at 21.334 kb on - strand at 21.334 kb on - strand at 21.447 kb on + strand at 21.447 kb on + strand at 21.447 kb on + strand at 21.447 kb on + strand at 21.447 kb on + strand at 21.448 kb on - strand at 21.448 kb on - strand at 21.448 kb on - strand at 21.448 kb on - strand at 21.448 kb on - strand at 21.549 kb on + strand at 21.549 kb on + strand at 21.549 kb on + strand at 21.549 kb on + strand at 21.549 kb on + strand at 21.550 kb on - strand at 21.550 kb on - strand at 21.550 kb on - strand at 21.576 kb on + strand at 21.576 kb on + strand at 21.577 kb on - strand at 21.577 kb on - strand at 21.686 kb on - strand at 21.693 kb on + strand at 21.696 kb on - strand at 21.696 kb on - strand at 21.753 kb on - strand at 21.783 kb on - strand at 21.827 kb on + strand at 21.902 kb on - strand at 22.014 kb on + strand at 22.014 kb on + strand at 22.014 kb on + strand at 22.014 kb on + strand at 22.014 kb on + strand at 22.014 kb on + strand at 22.015 kb on - strand at 22.015 kb on - strand at 22.015 kb on - strand at 22.015 kb on - strand at 22.015 kb on - strand at 22.015 kb on - strand at 22.015 kb on - strand at 22.015 kb on - strand at 22.015 kb on - strand at 22.015 kb on - strand at 22.024 kb on + strand at 22.025 kb on - strand at 22.056 kb on + strand at 22.056 kb on + strand at 22.056 kb on + strand at 22.056 kb on + strand at 22.056 kb on + strand at 22.056 kb on + strand at 22.056 kb on + strand at 22.056 kb on + strand at 22.056 kb on + strand at 22.057 kb on - strand at 22.057 kb on - strand at 22.057 kb on - strand at 22.057 kb on - strand at 22.279 kb on + strand at 22.279 kb on + strand at 22.279 kb on + strand at 22.280 kb on - strand at 22.411 kb on + strand, within MPMX19_04640 at 22.411 kb on + strand, within MPMX19_04640 at 22.411 kb on + strand, within MPMX19_04640 at 22.412 kb on - strand, within MPMX19_04640 at 22.412 kb on - strand, within MPMX19_04640 at 22.470 kb on + strand, within MPMX19_04640 at 22.470 kb on + strand, within MPMX19_04640 at 22.470 kb on + strand, within MPMX19_04640 at 22.471 kb on - strand, within MPMX19_04640 at 22.710 kb on + strand, within MPMX19_04640 at 22.711 kb on - strand, within MPMX19_04640 at 22.711 kb on - strand, within MPMX19_04640 at 22.803 kb on + strand, within MPMX19_04640 at 22.803 kb on + strand, within MPMX19_04640 at 22.803 kb on + strand, within MPMX19_04640 at 22.804 kb on - strand, within MPMX19_04640 at 22.804 kb on - strand, within MPMX19_04640 at 22.890 kb on + strand, within MPMX19_04640 at 23.082 kb on + strand at 23.082 kb on + strand at 23.082 kb on + strand at 23.083 kb on - strand at 23.083 kb on - strand at 23.083 kb on - strand at 23.106 kb on + strand at 23.221 kb on - strand at 23.221 kb on - strand at 23.221 kb on - strand at 23.425 kb on - strand, within MPMX19_04641 at 23.439 kb on + strand, within MPMX19_04641 at 23.440 kb on - strand, within MPMX19_04641 at 23.958 kb on + strand, within MPMX19_04641 at 23.958 kb on + strand, within MPMX19_04641 at 23.959 kb on - strand, within MPMX19_04641 at 23.959 kb on - strand, within MPMX19_04641 at 23.967 kb on + strand, within MPMX19_04641 at 23.967 kb on + strand, within MPMX19_04641 at 23.967 kb on + strand, within MPMX19_04641 at 23.967 kb on + strand, within MPMX19_04641 at 23.967 kb on + strand, within MPMX19_04641 at 23.967 kb on + strand, within MPMX19_04641 at 23.967 kb on + strand, within MPMX19_04641 at 23.967 kb on + strand, within MPMX19_04641 at 23.967 kb on + strand, within MPMX19_04641 at 23.967 kb on + strand, within MPMX19_04641 at 23.967 kb on + strand, within MPMX19_04641 at 23.967 kb on + strand, within MPMX19_04641 at 23.968 kb on - strand, within MPMX19_04641 at 23.968 kb on - strand, within MPMX19_04641 at 23.968 kb on - strand, within MPMX19_04641 at 23.968 kb on - strand, within MPMX19_04641 at 23.968 kb on - strand, within MPMX19_04641 at 23.968 kb on - strand, within MPMX19_04641 at 23.968 kb on - strand, within MPMX19_04641 at 23.968 kb on - strand, within MPMX19_04641 at 23.997 kb on + strand, within MPMX19_04641 at 23.997 kb on + strand, within MPMX19_04641 at 23.998 kb on - strand, within MPMX19_04641 at 23.998 kb on - strand, within MPMX19_04641 at 23.998 kb on - strand, within MPMX19_04641 at 23.998 kb on - strand, within MPMX19_04641 at 23.998 kb on - strand, within MPMX19_04641 at 23.998 kb on - strand, within MPMX19_04641 at 24.054 kb on + strand, within MPMX19_04641 at 24.054 kb on + strand, within MPMX19_04641 at 24.055 kb on - strand, within MPMX19_04641 at 24.055 kb on - strand, within MPMX19_04641 at 24.055 kb on - strand, within MPMX19_04641
Per-strain Table
Position Strand Gene LocusTag Fraction NF remove 21,324 + +0.3 21,325 - -0.5 21,333 + +2.0 21,333 + -1.4 21,333 + -1.4 21,333 + +0.1 21,333 + -0.3 21,334 - +0.7 21,334 - +1.4 21,334 - -0.7 21,447 + +1.5 21,447 + +0.3 21,447 + -0.5 21,447 + +0.2 21,447 + -0.2 21,448 - -0.7 21,448 - -0.7 21,448 - -0.4 21,448 - +2.2 21,448 - -0.6 21,549 + -0.1 21,549 + +0.4 21,549 + -0.2 21,549 + -1.1 21,549 + -0.4 21,550 - +0.3 21,550 - +0.1 21,550 - -0.1 21,576 + -1.2 21,576 + -0.2 21,577 - -1.9 21,577 - +0.0 21,686 - -0.7 21,693 + -1.7 21,696 - -1.1 21,696 - +1.5 21,753 - +0.5 21,783 - -2.3 21,827 + -1.7 21,902 - +0.7 22,014 + -2.5 22,014 + -2.0 22,014 + -1.9 22,014 + +0.4 22,014 + -0.4 22,014 + -0.0 22,015 - -0.1 22,015 - -2.2 22,015 - -0.6 22,015 - -1.3 22,015 - -0.9 22,015 - -0.1 22,015 - -1.1 22,015 - +0.7 22,015 - +0.1 22,015 - +0.3 22,024 + -0.5 22,025 - -1.1 22,056 + -0.8 22,056 + -0.2 22,056 + -0.3 22,056 + -0.1 22,056 + +0.7 22,056 + -0.5 22,056 + -0.5 22,056 + -0.3 22,056 + -0.7 22,057 - -0.3 22,057 - -0.1 22,057 - +0.3 22,057 - +0.1 22,279 + -1.0 22,279 + -1.3 22,279 + +0.3 22,280 - +0.1 22,411 + MPMX19_04640 0.14 -1.2 22,411 + MPMX19_04640 0.14 -2.1 22,411 + MPMX19_04640 0.14 -0.1 22,412 - MPMX19_04640 0.14 -0.3 22,412 - MPMX19_04640 0.14 -0.6 22,470 + MPMX19_04640 0.21 -0.9 22,470 + MPMX19_04640 0.21 -1.0 22,470 + MPMX19_04640 0.21 +0.1 22,471 - MPMX19_04640 0.21 -0.7 22,710 + MPMX19_04640 0.51 -0.6 22,711 - MPMX19_04640 0.51 -0.1 22,711 - MPMX19_04640 0.51 -0.7 22,803 + MPMX19_04640 0.62 +0.4 22,803 + MPMX19_04640 0.62 -1.3 22,803 + MPMX19_04640 0.62 -0.4 22,804 - MPMX19_04640 0.62 +0.7 22,804 - MPMX19_04640 0.62 +0.7 22,890 + MPMX19_04640 0.73 +0.7 23,082 + -0.7 23,082 + -0.1 23,082 + -0.5 23,083 - -2.4 23,083 - -1.1 23,083 - -0.1 23,106 + -0.2 23,221 - -1.1 23,221 - +0.6 23,221 - -0.1 23,425 - MPMX19_04641 0.13 -0.7 23,439 + MPMX19_04641 0.14 -0.4 23,440 - MPMX19_04641 0.14 -1.0 23,958 + MPMX19_04641 0.39 -0.8 23,958 + MPMX19_04641 0.39 +0.5 23,959 - MPMX19_04641 0.39 -1.0 23,959 - MPMX19_04641 0.39 -1.5 23,967 + MPMX19_04641 0.40 -1.3 23,967 + MPMX19_04641 0.40 -2.0 23,967 + MPMX19_04641 0.40 +0.8 23,967 + MPMX19_04641 0.40 -2.3 23,967 + MPMX19_04641 0.40 -1.7 23,967 + MPMX19_04641 0.40 -0.3 23,967 + MPMX19_04641 0.40 +1.7 23,967 + MPMX19_04641 0.40 -1.4 23,967 + MPMX19_04641 0.40 -0.2 23,967 + MPMX19_04641 0.40 -0.9 23,967 + MPMX19_04641 0.40 -1.6 23,967 + MPMX19_04641 0.40 -1.9 23,968 - MPMX19_04641 0.40 +0.5 23,968 - MPMX19_04641 0.40 -0.7 23,968 - MPMX19_04641 0.40 -0.9 23,968 - MPMX19_04641 0.40 -1.0 23,968 - MPMX19_04641 0.40 +0.6 23,968 - MPMX19_04641 0.40 -0.9 23,968 - MPMX19_04641 0.40 -0.3 23,968 - MPMX19_04641 0.40 -0.3 23,997 + MPMX19_04641 0.41 -3.1 23,997 + MPMX19_04641 0.41 -1.6 23,998 - MPMX19_04641 0.41 +0.5 23,998 - MPMX19_04641 0.41 -1.0 23,998 - MPMX19_04641 0.41 -0.4 23,998 - MPMX19_04641 0.41 -0.3 23,998 - MPMX19_04641 0.41 -1.7 23,998 - MPMX19_04641 0.41 -0.8 24,054 + MPMX19_04641 0.44 -1.0 24,054 + MPMX19_04641 0.44 -0.4 24,055 - MPMX19_04641 0.44 +0.5 24,055 - MPMX19_04641 0.44 -0.3 24,055 - MPMX19_04641 0.44 +0.9
Or see this region's nucleotide sequence