Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_04508

Experiment: NF

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_04506 and MPMX19_04507 are separated by 299 nucleotidesMPMX19_04507 and MPMX19_04508 overlap by 7 nucleotidesMPMX19_04508 and MPMX19_04509 are separated by 12 nucleotides MPMX19_04506: MPMX19_04506 - Aliphatic amidase expression-regulating protein, at 875,275 to 876,444 _04506 MPMX19_04507: MPMX19_04507 - Putative phosphoserine phosphatase 2, at 876,744 to 877,271 _04507 MPMX19_04508: MPMX19_04508 - Phosphoglycolate phosphatase, at 877,265 to 877,957 _04508 MPMX19_04509: MPMX19_04509 - Spermidine/putrescine import ATP-binding protein PotA, at 877,970 to 879,085 _04509 Position (kb) 877 878Strain fitness (log2 ratio) -2 -1 0 1 2at 876.435 kb on + strandat 876.436 kb on - strandat 876.436 kb on - strandat 876.477 kb on + strandat 876.543 kb on - strandat 876.668 kb on + strandat 876.668 kb on + strandat 876.668 kb on + strandat 876.668 kb on + strandat 876.668 kb on + strandat 876.668 kb on + strandat 876.668 kb on + strandat 876.668 kb on + strandat 876.669 kb on - strandat 876.669 kb on - strandat 876.669 kb on - strandat 876.669 kb on - strandat 876.669 kb on - strandat 876.669 kb on - strandat 876.669 kb on - strandat 876.669 kb on - strandat 876.669 kb on - strandat 876.680 kb on + strandat 876.680 kb on + strandat 876.680 kb on + strandat 876.680 kb on + strandat 876.681 kb on - strandat 876.681 kb on - strandat 876.683 kb on + strandat 876.683 kb on + strandat 876.684 kb on - strandat 876.684 kb on - strandat 876.684 kb on - strandat 877.347 kb on + strand, within MPMX19_04508at 877.347 kb on + strand, within MPMX19_04508at 877.347 kb on + strand, within MPMX19_04508at 877.347 kb on + strand, within MPMX19_04508at 877.348 kb on - strand, within MPMX19_04508at 877.348 kb on - strand, within MPMX19_04508at 877.348 kb on - strand, within MPMX19_04508at 877.348 kb on - strand, within MPMX19_04508at 877.503 kb on + strand, within MPMX19_04508at 877.504 kb on - strand, within MPMX19_04508at 877.504 kb on - strand, within MPMX19_04508at 877.653 kb on + strand, within MPMX19_04508at 877.654 kb on - strand, within MPMX19_04508at 877.686 kb on + strand, within MPMX19_04508at 877.686 kb on + strand, within MPMX19_04508at 877.687 kb on - strand, within MPMX19_04508at 877.687 kb on - strand, within MPMX19_04508at 877.687 kb on - strand, within MPMX19_04508at 877.971 kb on + strandat 877.971 kb on + strandat 877.971 kb on + strandat 877.971 kb on + strandat 877.971 kb on + strandat 877.971 kb on + strandat 877.972 kb on - strandat 877.972 kb on - strandat 877.972 kb on - strandat 877.972 kb on - strandat 877.972 kb on - strandat 878.100 kb on + strand, within MPMX19_04509at 878.101 kb on - strand, within MPMX19_04509at 878.376 kb on + strand, within MPMX19_04509at 878.377 kb on - strand, within MPMX19_04509at 878.377 kb on - strand, within MPMX19_04509at 878.377 kb on - strand, within MPMX19_04509at 878.790 kb on + strand, within MPMX19_04509at 878.790 kb on + strand, within MPMX19_04509at 878.791 kb on - strand, within MPMX19_04509at 878.791 kb on - strand, within MPMX19_04509at 878.791 kb on - strand, within MPMX19_04509at 878.791 kb on - strand, within MPMX19_04509at 878.791 kb on - strand, within MPMX19_04509at 878.791 kb on - strand, within MPMX19_04509

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Per-strain Table

Position Strand Gene LocusTag Fraction NF
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876,435 + -0.2
876,436 - +0.2
876,436 - -1.8
876,477 + -0.9
876,543 - -1.2
876,668 + +0.4
876,668 + +0.3
876,668 + -1.9
876,668 + -0.4
876,668 + -0.3
876,668 + +0.8
876,668 + -1.6
876,668 + -2.1
876,669 - -0.1
876,669 - +0.6
876,669 - +0.8
876,669 - -0.2
876,669 - -1.0
876,669 - -1.2
876,669 - -0.6
876,669 - -0.5
876,669 - -1.6
876,680 + +0.8
876,680 + +0.0
876,680 + -0.1
876,680 + -0.0
876,681 - -0.1
876,681 - -0.9
876,683 + -0.3
876,683 + +0.0
876,684 - -1.0
876,684 - -0.0
876,684 - +0.3
877,347 + MPMX19_04508 0.12 +0.3
877,347 + MPMX19_04508 0.12 +0.4
877,347 + MPMX19_04508 0.12 -1.9
877,347 + MPMX19_04508 0.12 +0.8
877,348 - MPMX19_04508 0.12 -0.8
877,348 - MPMX19_04508 0.12 +1.1
877,348 - MPMX19_04508 0.12 +2.2
877,348 - MPMX19_04508 0.12 -0.7
877,503 + MPMX19_04508 0.34 +2.2
877,504 - MPMX19_04508 0.34 +0.5
877,504 - MPMX19_04508 0.34 -0.6
877,653 + MPMX19_04508 0.56 -0.1
877,654 - MPMX19_04508 0.56 -0.2
877,686 + MPMX19_04508 0.61 +0.4
877,686 + MPMX19_04508 0.61 +0.4
877,687 - MPMX19_04508 0.61 +0.2
877,687 - MPMX19_04508 0.61 -0.1
877,687 - MPMX19_04508 0.61 -0.6
877,971 + -0.5
877,971 + +0.8
877,971 + +1.9
877,971 + +0.2
877,971 + -0.4
877,971 + +0.8
877,972 - -0.0
877,972 - -0.2
877,972 - -0.2
877,972 - -0.1
877,972 - +1.2
878,100 + MPMX19_04509 0.12 +0.5
878,101 - MPMX19_04509 0.12 -1.0
878,376 + MPMX19_04509 0.36 -2.0
878,377 - MPMX19_04509 0.36 -0.4
878,377 - MPMX19_04509 0.36 +1.1
878,377 - MPMX19_04509 0.36 -0.1
878,790 + MPMX19_04509 0.73 -0.2
878,790 + MPMX19_04509 0.73 -1.8
878,791 - MPMX19_04509 0.74 +0.4
878,791 - MPMX19_04509 0.74 -1.9
878,791 - MPMX19_04509 0.74 +0.5
878,791 - MPMX19_04509 0.74 -1.4
878,791 - MPMX19_04509 0.74 -2.0
878,791 - MPMX19_04509 0.74 +1.2

Or see this region's nucleotide sequence