Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_04447

Experiment: NF

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX19_04446 and MPMX19_04447 are separated by 4 nucleotidesMPMX19_04447 and MPMX19_04448 are separated by 13 nucleotides MPMX19_04446: MPMX19_04446 - NAD(P) transhydrogenase subunit beta, at 813,260 to 814,654 _04446 MPMX19_04447: MPMX19_04447 - hypothetical protein, at 814,659 to 815,078 _04447 MPMX19_04448: MPMX19_04448 - NAD(P) transhydrogenase subunit alpha part 1, at 815,092 to 816,261 _04448 Position (kb) 814 815 816Strain fitness (log2 ratio) -3 -2 -1 0 1at 813.754 kb on - strand, within MPMX19_04446at 813.754 kb on - strand, within MPMX19_04446at 813.754 kb on - strand, within MPMX19_04446at 813.754 kb on - strand, within MPMX19_04446at 813.754 kb on - strand, within MPMX19_04446at 813.754 kb on - strand, within MPMX19_04446at 813.754 kb on - strand, within MPMX19_04446at 813.754 kb on - strand, within MPMX19_04446at 813.754 kb on - strand, within MPMX19_04446at 813.754 kb on - strand, within MPMX19_04446at 813.754 kb on - strand, within MPMX19_04446at 813.754 kb on - strand, within MPMX19_04446at 813.754 kb on - strand, within MPMX19_04446at 813.991 kb on - strand, within MPMX19_04446at 813.991 kb on - strand, within MPMX19_04446at 813.991 kb on - strand, within MPMX19_04446at 813.991 kb on - strand, within MPMX19_04446at 813.991 kb on - strand, within MPMX19_04446at 813.991 kb on - strand, within MPMX19_04446at 813.991 kb on - strand, within MPMX19_04446at 813.991 kb on - strand, within MPMX19_04446at 813.991 kb on - strand, within MPMX19_04446at 814.323 kb on + strand, within MPMX19_04446at 814.323 kb on + strand, within MPMX19_04446at 814.323 kb on + strand, within MPMX19_04446at 814.338 kb on + strand, within MPMX19_04446at 814.338 kb on + strand, within MPMX19_04446at 814.338 kb on + strand, within MPMX19_04446at 814.885 kb on + strand, within MPMX19_04447at 814.885 kb on + strand, within MPMX19_04447at 814.885 kb on + strand, within MPMX19_04447at 814.885 kb on + strand, within MPMX19_04447at 814.885 kb on + strand, within MPMX19_04447at 814.885 kb on + strand, within MPMX19_04447at 814.885 kb on + strand, within MPMX19_04447at 814.885 kb on + strand, within MPMX19_04447at 814.885 kb on + strand, within MPMX19_04447at 814.885 kb on + strand, within MPMX19_04447at 814.885 kb on + strand, within MPMX19_04447at 814.885 kb on + strand, within MPMX19_04447at 814.885 kb on + strand, within MPMX19_04447at 814.885 kb on + strand, within MPMX19_04447at 814.885 kb on + strand, within MPMX19_04447at 814.885 kb on + strand, within MPMX19_04447at 814.885 kb on + strand, within MPMX19_04447at 814.885 kb on + strand, within MPMX19_04447at 814.888 kb on + strand, within MPMX19_04447at 814.888 kb on + strand, within MPMX19_04447at 814.888 kb on + strand, within MPMX19_04447at 814.888 kb on + strand, within MPMX19_04447at 814.888 kb on + strand, within MPMX19_04447at 815.289 kb on - strand, within MPMX19_04448at 815.289 kb on - strand, within MPMX19_04448at 815.289 kb on - strand, within MPMX19_04448at 815.289 kb on - strand, within MPMX19_04448at 815.289 kb on - strand, within MPMX19_04448at 815.289 kb on - strand, within MPMX19_04448at 815.289 kb on - strand, within MPMX19_04448at 815.289 kb on - strand, within MPMX19_04448at 815.289 kb on - strand, within MPMX19_04448at 815.532 kb on - strand, within MPMX19_04448at 815.532 kb on - strand, within MPMX19_04448at 815.532 kb on - strand, within MPMX19_04448at 815.532 kb on - strand, within MPMX19_04448at 815.532 kb on - strand, within MPMX19_04448at 815.792 kb on + strand, within MPMX19_04448at 815.792 kb on + strand, within MPMX19_04448at 815.792 kb on + strand, within MPMX19_04448at 815.792 kb on + strand, within MPMX19_04448at 815.823 kb on - strand, within MPMX19_04448at 815.823 kb on - strand, within MPMX19_04448at 815.823 kb on - strand, within MPMX19_04448at 815.823 kb on - strand, within MPMX19_04448at 815.823 kb on - strand, within MPMX19_04448at 815.823 kb on - strand, within MPMX19_04448at 815.925 kb on - strand, within MPMX19_04448at 815.925 kb on - strand, within MPMX19_04448at 815.925 kb on - strand, within MPMX19_04448at 815.951 kb on + strand, within MPMX19_04448at 815.951 kb on + strand, within MPMX19_04448at 815.951 kb on + strand, within MPMX19_04448at 815.951 kb on + strand, within MPMX19_04448at 815.951 kb on + strand, within MPMX19_04448at 815.951 kb on + strand, within MPMX19_04448at 815.964 kb on + strand, within MPMX19_04448

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction NF
remove
813,754 - MPMX19_04446 0.35 +0.1
813,754 - MPMX19_04446 0.35 -0.5
813,754 - MPMX19_04446 0.35 +0.6
813,754 - MPMX19_04446 0.35 -0.1
813,754 - MPMX19_04446 0.35 -0.8
813,754 - MPMX19_04446 0.35 -0.2
813,754 - MPMX19_04446 0.35 +0.6
813,754 - MPMX19_04446 0.35 +0.5
813,754 - MPMX19_04446 0.35 +0.2
813,754 - MPMX19_04446 0.35 -0.2
813,754 - MPMX19_04446 0.35 -1.6
813,754 - MPMX19_04446 0.35 -1.5
813,754 - MPMX19_04446 0.35 -0.3
813,991 - MPMX19_04446 0.52 -0.7
813,991 - MPMX19_04446 0.52 +0.9
813,991 - MPMX19_04446 0.52 -0.8
813,991 - MPMX19_04446 0.52 +0.3
813,991 - MPMX19_04446 0.52 +0.5
813,991 - MPMX19_04446 0.52 -1.4
813,991 - MPMX19_04446 0.52 -0.4
813,991 - MPMX19_04446 0.52 +0.3
813,991 - MPMX19_04446 0.52 -1.4
814,323 + MPMX19_04446 0.76 -0.4
814,323 + MPMX19_04446 0.76 -1.8
814,323 + MPMX19_04446 0.76 -1.5
814,338 + MPMX19_04446 0.77 -1.1
814,338 + MPMX19_04446 0.77 -0.4
814,338 + MPMX19_04446 0.77 -0.6
814,885 + MPMX19_04447 0.54 +0.8
814,885 + MPMX19_04447 0.54 -2.3
814,885 + MPMX19_04447 0.54 -1.2
814,885 + MPMX19_04447 0.54 -0.1
814,885 + MPMX19_04447 0.54 -1.2
814,885 + MPMX19_04447 0.54 -0.5
814,885 + MPMX19_04447 0.54 -1.0
814,885 + MPMX19_04447 0.54 +0.3
814,885 + MPMX19_04447 0.54 -0.2
814,885 + MPMX19_04447 0.54 -0.0
814,885 + MPMX19_04447 0.54 -1.9
814,885 + MPMX19_04447 0.54 +0.4
814,885 + MPMX19_04447 0.54 +0.7
814,885 + MPMX19_04447 0.54 +0.5
814,885 + MPMX19_04447 0.54 +0.2
814,885 + MPMX19_04447 0.54 -0.2
814,885 + MPMX19_04447 0.54 +0.5
814,885 + MPMX19_04447 0.54 -1.0
814,888 + MPMX19_04447 0.55 +0.8
814,888 + MPMX19_04447 0.55 +0.9
814,888 + MPMX19_04447 0.55 -2.0
814,888 + MPMX19_04447 0.55 +0.7
814,888 + MPMX19_04447 0.55 -0.5
815,289 - MPMX19_04448 0.17 +0.8
815,289 - MPMX19_04448 0.17 -2.9
815,289 - MPMX19_04448 0.17 -2.2
815,289 - MPMX19_04448 0.17 -0.7
815,289 - MPMX19_04448 0.17 +0.8
815,289 - MPMX19_04448 0.17 -0.5
815,289 - MPMX19_04448 0.17 -0.0
815,289 - MPMX19_04448 0.17 -1.9
815,289 - MPMX19_04448 0.17 +0.8
815,532 - MPMX19_04448 0.38 -0.8
815,532 - MPMX19_04448 0.38 -0.2
815,532 - MPMX19_04448 0.38 +0.2
815,532 - MPMX19_04448 0.38 +0.4
815,532 - MPMX19_04448 0.38 -1.0
815,792 + MPMX19_04448 0.60 -0.6
815,792 + MPMX19_04448 0.60 +0.8
815,792 + MPMX19_04448 0.60 -0.0
815,792 + MPMX19_04448 0.60 -0.9
815,823 - MPMX19_04448 0.62 +0.4
815,823 - MPMX19_04448 0.62 -0.1
815,823 - MPMX19_04448 0.62 -0.1
815,823 - MPMX19_04448 0.62 -1.0
815,823 - MPMX19_04448 0.62 +0.5
815,823 - MPMX19_04448 0.62 -0.7
815,925 - MPMX19_04448 0.71 -0.1
815,925 - MPMX19_04448 0.71 +0.5
815,925 - MPMX19_04448 0.71 +0.6
815,951 + MPMX19_04448 0.73 +0.2
815,951 + MPMX19_04448 0.73 -0.7
815,951 + MPMX19_04448 0.73 +0.0
815,951 + MPMX19_04448 0.73 +0.0
815,951 + MPMX19_04448 0.73 -0.1
815,951 + MPMX19_04448 0.73 -2.2
815,964 + MPMX19_04448 0.75 +0.9

Or see this region's nucleotide sequence