Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_04331

Experiment: NF

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_04329 and MPMX19_04330 are separated by 192 nucleotidesMPMX19_04330 and MPMX19_04331 are separated by 36 nucleotidesMPMX19_04331 and MPMX19_04332 are separated by 130 nucleotidesMPMX19_04332 and MPMX19_04333 are separated by 85 nucleotides MPMX19_04329: MPMX19_04329 - Deoxyguanosinetriphosphate triphosphohydrolase-like protein, at 693,739 to 694,938 _04329 MPMX19_04330: MPMX19_04330 - Iron-sulfur cluster insertion protein ErpA, at 695,131 to 695,487 _04330 MPMX19_04331: MPMX19_04331 - Exodeoxyribonuclease, at 695,524 to 696,297 _04331 MPMX19_04332: MPMX19_04332 - hypothetical protein, at 696,428 to 697,000 _04332 MPMX19_04333: MPMX19_04333 - tRNA-Ser, at 697,086 to 697,175 _04333 Position (kb) 695 696 697Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 694.740 kb on - strand, within MPMX19_04329at 694.743 kb on - strand, within MPMX19_04329at 694.743 kb on - strand, within MPMX19_04329at 694.743 kb on - strand, within MPMX19_04329at 694.758 kb on - strand, within MPMX19_04329at 694.758 kb on - strand, within MPMX19_04329at 694.758 kb on - strand, within MPMX19_04329at 694.951 kb on - strandat 694.990 kb on - strandat 694.990 kb on - strandat 694.990 kb on - strandat 694.990 kb on - strandat 694.990 kb on - strandat 694.990 kb on - strandat 694.990 kb on - strandat 694.990 kb on - strandat 694.990 kb on - strandat 694.990 kb on - strandat 695.060 kb on + strandat 695.060 kb on + strandat 695.060 kb on + strandat 695.060 kb on + strandat 695.060 kb on + strandat 695.060 kb on + strandat 695.060 kb on + strandat 695.060 kb on + strandat 695.060 kb on + strandat 695.061 kb on - strandat 695.061 kb on - strandat 695.061 kb on - strandat 695.061 kb on - strandat 695.061 kb on - strandat 695.061 kb on - strandat 695.061 kb on - strandat 695.087 kb on + strandat 695.087 kb on + strandat 695.087 kb on + strandat 695.087 kb on + strandat 695.087 kb on + strandat 695.087 kb on + strandat 695.087 kb on + strandat 695.087 kb on + strandat 695.087 kb on + strandat 695.088 kb on - strandat 695.088 kb on - strandat 695.677 kb on + strand, within MPMX19_04331at 695.707 kb on + strand, within MPMX19_04331at 695.707 kb on + strand, within MPMX19_04331at 695.707 kb on + strand, within MPMX19_04331at 695.707 kb on + strand, within MPMX19_04331at 695.707 kb on + strand, within MPMX19_04331at 695.707 kb on + strand, within MPMX19_04331at 695.707 kb on + strand, within MPMX19_04331at 695.707 kb on + strand, within MPMX19_04331at 695.707 kb on + strand, within MPMX19_04331at 695.707 kb on + strand, within MPMX19_04331at 695.707 kb on + strand, within MPMX19_04331at 695.707 kb on + strand, within MPMX19_04331at 695.708 kb on - strand, within MPMX19_04331at 695.708 kb on - strand, within MPMX19_04331at 695.708 kb on - strand, within MPMX19_04331at 695.708 kb on - strand, within MPMX19_04331at 695.708 kb on - strand, within MPMX19_04331at 695.708 kb on - strand, within MPMX19_04331at 695.708 kb on - strand, within MPMX19_04331at 695.708 kb on - strand, within MPMX19_04331at 695.708 kb on - strand, within MPMX19_04331at 695.794 kb on + strand, within MPMX19_04331at 695.794 kb on + strand, within MPMX19_04331at 695.794 kb on + strand, within MPMX19_04331at 695.794 kb on + strand, within MPMX19_04331at 695.794 kb on + strand, within MPMX19_04331at 695.795 kb on - strand, within MPMX19_04331at 695.795 kb on - strand, within MPMX19_04331at 695.795 kb on - strand, within MPMX19_04331at 695.836 kb on + strand, within MPMX19_04331at 695.836 kb on + strand, within MPMX19_04331at 695.836 kb on + strand, within MPMX19_04331at 695.836 kb on + strand, within MPMX19_04331at 695.836 kb on + strand, within MPMX19_04331at 695.836 kb on + strand, within MPMX19_04331at 695.836 kb on + strand, within MPMX19_04331at 695.837 kb on - strand, within MPMX19_04331at 695.837 kb on - strand, within MPMX19_04331at 695.878 kb on + strand, within MPMX19_04331at 695.878 kb on + strand, within MPMX19_04331at 695.878 kb on + strand, within MPMX19_04331at 695.878 kb on + strand, within MPMX19_04331at 695.878 kb on + strand, within MPMX19_04331at 695.879 kb on - strand, within MPMX19_04331at 695.879 kb on - strand, within MPMX19_04331at 695.879 kb on - strand, within MPMX19_04331at 695.879 kb on - strand, within MPMX19_04331at 695.905 kb on + strand, within MPMX19_04331at 695.905 kb on + strand, within MPMX19_04331at 695.905 kb on + strand, within MPMX19_04331at 695.905 kb on + strand, within MPMX19_04331at 695.905 kb on + strand, within MPMX19_04331at 695.905 kb on + strand, within MPMX19_04331at 695.905 kb on + strand, within MPMX19_04331at 695.905 kb on + strand, within MPMX19_04331at 695.906 kb on - strand, within MPMX19_04331at 695.906 kb on - strand, within MPMX19_04331at 695.906 kb on - strand, within MPMX19_04331at 695.906 kb on - strand, within MPMX19_04331at 695.906 kb on - strand, within MPMX19_04331at 695.962 kb on + strand, within MPMX19_04331at 695.962 kb on + strand, within MPMX19_04331at 695.962 kb on + strand, within MPMX19_04331at 695.962 kb on + strand, within MPMX19_04331at 695.962 kb on + strand, within MPMX19_04331at 695.962 kb on + strand, within MPMX19_04331at 695.962 kb on + strand, within MPMX19_04331at 695.962 kb on + strand, within MPMX19_04331at 695.962 kb on + strand, within MPMX19_04331at 695.962 kb on + strand, within MPMX19_04331at 695.962 kb on + strand, within MPMX19_04331at 695.962 kb on + strand, within MPMX19_04331at 695.963 kb on - strand, within MPMX19_04331at 695.963 kb on - strand, within MPMX19_04331at 695.963 kb on - strand, within MPMX19_04331at 695.963 kb on - strand, within MPMX19_04331at 695.963 kb on - strand, within MPMX19_04331at 695.963 kb on - strand, within MPMX19_04331at 695.963 kb on - strand, within MPMX19_04331at 696.085 kb on + strand, within MPMX19_04331at 696.085 kb on + strand, within MPMX19_04331at 696.086 kb on - strand, within MPMX19_04331at 696.115 kb on + strand, within MPMX19_04331at 696.115 kb on + strand, within MPMX19_04331at 696.115 kb on + strand, within MPMX19_04331at 696.115 kb on + strand, within MPMX19_04331at 696.115 kb on + strand, within MPMX19_04331at 696.116 kb on - strand, within MPMX19_04331at 696.116 kb on - strand, within MPMX19_04331at 696.116 kb on - strand, within MPMX19_04331at 696.117 kb on + strand, within MPMX19_04331at 696.117 kb on + strand, within MPMX19_04331at 696.117 kb on + strand, within MPMX19_04331at 696.117 kb on + strand, within MPMX19_04331at 696.117 kb on + strand, within MPMX19_04331at 696.117 kb on + strand, within MPMX19_04331at 696.117 kb on + strand, within MPMX19_04331at 696.117 kb on + strand, within MPMX19_04331at 696.117 kb on + strand, within MPMX19_04331at 696.117 kb on + strand, within MPMX19_04331at 696.117 kb on + strand, within MPMX19_04331at 696.117 kb on + strand, within MPMX19_04331at 696.118 kb on - strand, within MPMX19_04331at 696.118 kb on - strand, within MPMX19_04331at 696.118 kb on - strand, within MPMX19_04331at 696.118 kb on - strand, within MPMX19_04331at 696.118 kb on - strand, within MPMX19_04331at 696.118 kb on - strand, within MPMX19_04331at 696.130 kb on + strand, within MPMX19_04331at 696.334 kb on - strandat 696.362 kb on + strandat 696.362 kb on + strandat 696.362 kb on + strandat 696.362 kb on + strandat 696.363 kb on - strandat 696.363 kb on - strandat 696.363 kb on - strandat 696.363 kb on - strandat 696.418 kb on + strandat 696.419 kb on - strandat 696.419 kb on - strandat 696.419 kb on - strandat 696.419 kb on - strandat 696.722 kb on + strand, within MPMX19_04332at 696.722 kb on + strand, within MPMX19_04332at 696.722 kb on + strand, within MPMX19_04332at 696.722 kb on + strand, within MPMX19_04332at 696.722 kb on + strand, within MPMX19_04332at 696.722 kb on + strand, within MPMX19_04332at 696.722 kb on + strand, within MPMX19_04332at 696.722 kb on + strand, within MPMX19_04332at 696.722 kb on + strand, within MPMX19_04332at 696.722 kb on + strand, within MPMX19_04332at 696.722 kb on + strand, within MPMX19_04332at 696.722 kb on + strand, within MPMX19_04332at 696.723 kb on - strand, within MPMX19_04332at 696.723 kb on - strand, within MPMX19_04332at 696.723 kb on - strand, within MPMX19_04332at 696.723 kb on - strand, within MPMX19_04332at 696.723 kb on - strand, within MPMX19_04332at 696.723 kb on - strand, within MPMX19_04332at 696.723 kb on - strand, within MPMX19_04332at 696.723 kb on - strand, within MPMX19_04332at 696.723 kb on - strand, within MPMX19_04332at 696.723 kb on - strand, within MPMX19_04332at 696.723 kb on - strand, within MPMX19_04332at 696.833 kb on + strand, within MPMX19_04332at 697.183 kb on + strandat 697.184 kb on - strandat 697.184 kb on - strandat 697.184 kb on - strandat 697.184 kb on - strandat 697.184 kb on - strandat 697.258 kb on + strandat 697.258 kb on + strandat 697.259 kb on - strandat 697.259 kb on - strandat 697.259 kb on - strandat 697.259 kb on - strandat 697.297 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NF
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694,740 - MPMX19_04329 0.83 -1.8
694,743 - MPMX19_04329 0.84 +1.8
694,743 - MPMX19_04329 0.84 +0.3
694,743 - MPMX19_04329 0.84 +0.0
694,758 - MPMX19_04329 0.85 -0.4
694,758 - MPMX19_04329 0.85 +1.0
694,758 - MPMX19_04329 0.85 -1.0
694,951 - -0.2
694,990 - -2.0
694,990 - +0.3
694,990 - -0.8
694,990 - +0.2
694,990 - +0.8
694,990 - -0.8
694,990 - -0.8
694,990 - -0.8
694,990 - -2.9
694,990 - +0.4
695,060 + -0.4
695,060 + -1.4
695,060 + -0.4
695,060 + -0.4
695,060 + -0.0
695,060 + -0.2
695,060 + -1.2
695,060 + -0.1
695,060 + +0.1
695,061 - -0.7
695,061 - +0.2
695,061 - +1.0
695,061 - -0.7
695,061 - +1.0
695,061 - -1.5
695,061 - +0.8
695,087 + +0.4
695,087 + +0.2
695,087 + -0.8
695,087 + -1.1
695,087 + +0.1
695,087 + -0.6
695,087 + -1.1
695,087 + +0.2
695,087 + -0.2
695,088 - -0.8
695,088 - +0.2
695,677 + MPMX19_04331 0.20 -0.6
695,707 + MPMX19_04331 0.24 -1.5
695,707 + MPMX19_04331 0.24 -1.4
695,707 + MPMX19_04331 0.24 -0.4
695,707 + MPMX19_04331 0.24 +0.8
695,707 + MPMX19_04331 0.24 -1.6
695,707 + MPMX19_04331 0.24 -0.2
695,707 + MPMX19_04331 0.24 +0.2
695,707 + MPMX19_04331 0.24 +2.1
695,707 + MPMX19_04331 0.24 -0.5
695,707 + MPMX19_04331 0.24 -2.3
695,707 + MPMX19_04331 0.24 -2.0
695,707 + MPMX19_04331 0.24 -1.5
695,708 - MPMX19_04331 0.24 +0.4
695,708 - MPMX19_04331 0.24 +0.5
695,708 - MPMX19_04331 0.24 +0.6
695,708 - MPMX19_04331 0.24 -0.8
695,708 - MPMX19_04331 0.24 -0.6
695,708 - MPMX19_04331 0.24 -0.8
695,708 - MPMX19_04331 0.24 -0.1
695,708 - MPMX19_04331 0.24 -1.2
695,708 - MPMX19_04331 0.24 -1.0
695,794 + MPMX19_04331 0.35 +1.2
695,794 + MPMX19_04331 0.35 +0.0
695,794 + MPMX19_04331 0.35 -0.1
695,794 + MPMX19_04331 0.35 -0.5
695,794 + MPMX19_04331 0.35 -0.9
695,795 - MPMX19_04331 0.35 +0.2
695,795 - MPMX19_04331 0.35 -1.1
695,795 - MPMX19_04331 0.35 -0.3
695,836 + MPMX19_04331 0.40 -0.4
695,836 + MPMX19_04331 0.40 -0.5
695,836 + MPMX19_04331 0.40 -1.5
695,836 + MPMX19_04331 0.40 -0.5
695,836 + MPMX19_04331 0.40 -0.8
695,836 + MPMX19_04331 0.40 -2.4
695,836 + MPMX19_04331 0.40 +0.3
695,837 - MPMX19_04331 0.40 +0.3
695,837 - MPMX19_04331 0.40 -0.0
695,878 + MPMX19_04331 0.46 +0.0
695,878 + MPMX19_04331 0.46 -0.5
695,878 + MPMX19_04331 0.46 -0.5
695,878 + MPMX19_04331 0.46 +0.2
695,878 + MPMX19_04331 0.46 -0.9
695,879 - MPMX19_04331 0.46 +0.5
695,879 - MPMX19_04331 0.46 -0.6
695,879 - MPMX19_04331 0.46 -0.2
695,879 - MPMX19_04331 0.46 -0.7
695,905 + MPMX19_04331 0.49 +0.2
695,905 + MPMX19_04331 0.49 -0.7
695,905 + MPMX19_04331 0.49 +1.4
695,905 + MPMX19_04331 0.49 -0.8
695,905 + MPMX19_04331 0.49 -1.4
695,905 + MPMX19_04331 0.49 +0.3
695,905 + MPMX19_04331 0.49 -0.1
695,905 + MPMX19_04331 0.49 -0.5
695,906 - MPMX19_04331 0.49 +0.5
695,906 - MPMX19_04331 0.49 +1.1
695,906 - MPMX19_04331 0.49 -2.0
695,906 - MPMX19_04331 0.49 -0.4
695,906 - MPMX19_04331 0.49 +0.8
695,962 + MPMX19_04331 0.57 -0.5
695,962 + MPMX19_04331 0.57 -1.5
695,962 + MPMX19_04331 0.57 -1.4
695,962 + MPMX19_04331 0.57 -1.2
695,962 + MPMX19_04331 0.57 +0.0
695,962 + MPMX19_04331 0.57 -0.9
695,962 + MPMX19_04331 0.57 -0.7
695,962 + MPMX19_04331 0.57 +1.0
695,962 + MPMX19_04331 0.57 -1.2
695,962 + MPMX19_04331 0.57 -0.2
695,962 + MPMX19_04331 0.57 -0.9
695,962 + MPMX19_04331 0.57 -0.7
695,963 - MPMX19_04331 0.57 -1.0
695,963 - MPMX19_04331 0.57 -0.2
695,963 - MPMX19_04331 0.57 -0.2
695,963 - MPMX19_04331 0.57 -0.2
695,963 - MPMX19_04331 0.57 -1.8
695,963 - MPMX19_04331 0.57 +0.0
695,963 - MPMX19_04331 0.57 -1.4
696,085 + MPMX19_04331 0.72 +0.0
696,085 + MPMX19_04331 0.72 -1.0
696,086 - MPMX19_04331 0.73 +0.8
696,115 + MPMX19_04331 0.76 +0.1
696,115 + MPMX19_04331 0.76 -0.9
696,115 + MPMX19_04331 0.76 -1.5
696,115 + MPMX19_04331 0.76 -1.4
696,115 + MPMX19_04331 0.76 +0.2
696,116 - MPMX19_04331 0.76 +0.3
696,116 - MPMX19_04331 0.76 +1.8
696,116 - MPMX19_04331 0.76 +0.5
696,117 + MPMX19_04331 0.77 +0.6
696,117 + MPMX19_04331 0.77 +1.4
696,117 + MPMX19_04331 0.77 +1.0
696,117 + MPMX19_04331 0.77 -0.0
696,117 + MPMX19_04331 0.77 -0.4
696,117 + MPMX19_04331 0.77 -1.5
696,117 + MPMX19_04331 0.77 -0.8
696,117 + MPMX19_04331 0.77 +0.5
696,117 + MPMX19_04331 0.77 -1.7
696,117 + MPMX19_04331 0.77 -0.2
696,117 + MPMX19_04331 0.77 +0.1
696,117 + MPMX19_04331 0.77 -0.8
696,118 - MPMX19_04331 0.77 -0.7
696,118 - MPMX19_04331 0.77 -1.5
696,118 - MPMX19_04331 0.77 +0.5
696,118 - MPMX19_04331 0.77 +0.6
696,118 - MPMX19_04331 0.77 -0.5
696,118 - MPMX19_04331 0.77 -1.1
696,130 + MPMX19_04331 0.78 -1.0
696,334 - +0.1
696,362 + -0.0
696,362 + +0.3
696,362 + +0.5
696,362 + -1.8
696,363 - +0.8
696,363 - -0.0
696,363 - -1.2
696,363 - +0.0
696,418 + +0.8
696,419 - +0.5
696,419 - +0.5
696,419 - -0.3
696,419 - -0.1
696,722 + MPMX19_04332 0.51 -1.8
696,722 + MPMX19_04332 0.51 -0.2
696,722 + MPMX19_04332 0.51 +1.4
696,722 + MPMX19_04332 0.51 -0.4
696,722 + MPMX19_04332 0.51 +0.7
696,722 + MPMX19_04332 0.51 -1.2
696,722 + MPMX19_04332 0.51 +0.1
696,722 + MPMX19_04332 0.51 +0.5
696,722 + MPMX19_04332 0.51 -1.5
696,722 + MPMX19_04332 0.51 -1.5
696,722 + MPMX19_04332 0.51 -0.9
696,722 + MPMX19_04332 0.51 +0.4
696,723 - MPMX19_04332 0.51 -0.0
696,723 - MPMX19_04332 0.51 +0.2
696,723 - MPMX19_04332 0.51 -0.4
696,723 - MPMX19_04332 0.51 -0.3
696,723 - MPMX19_04332 0.51 +1.2
696,723 - MPMX19_04332 0.51 -0.7
696,723 - MPMX19_04332 0.51 +1.6
696,723 - MPMX19_04332 0.51 -0.8
696,723 - MPMX19_04332 0.51 +1.2
696,723 - MPMX19_04332 0.51 +0.1
696,723 - MPMX19_04332 0.51 +1.0
696,833 + MPMX19_04332 0.71 +1.4
697,183 + +0.8
697,184 - +0.8
697,184 - +0.0
697,184 - -1.5
697,184 - +1.4
697,184 - +1.1
697,258 + -0.8
697,258 + -0.2
697,259 - -0.1
697,259 - -0.5
697,259 - +0.2
697,259 - -1.3
697,297 - +1.1

Or see this region's nucleotide sequence