Experiment: NF
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_04277 and MPMX19_04278 are separated by 3 nucleotides MPMX19_04278 and MPMX19_04279 are separated by 134 nucleotides MPMX19_04279 and MPMX19_04280 are separated by 33 nucleotides MPMX19_04280 and MPMX19_04281 are separated by 9 nucleotides
MPMX19_04277: MPMX19_04277 - Protein YhgF, at 636,760 to 639,114
_04277
MPMX19_04278: MPMX19_04278 - Threonine efflux protein, at 639,118 to 639,753
_04278
MPMX19_04279: MPMX19_04279 - hypothetical protein, at 639,888 to 640,148
_04279
MPMX19_04280: MPMX19_04280 - hypothetical protein, at 640,182 to 640,523
_04280
MPMX19_04281: MPMX19_04281 - hypothetical protein, at 640,533 to 641,420
_04281
Position (kb) 639
640
641 Strain fitness (log2 ratio) -2
-1
0
1
2 at 639.112 kb on + strand at 639.112 kb on + strand at 639.112 kb on + strand at 639.112 kb on + strand at 639.112 kb on + strand at 639.112 kb on + strand at 639.112 kb on + strand at 639.112 kb on + strand at 639.112 kb on + strand at 639.113 kb on - strand at 639.113 kb on - strand at 639.113 kb on - strand at 639.113 kb on - strand at 639.113 kb on - strand at 639.113 kb on - strand at 639.113 kb on - strand at 639.113 kb on - strand at 639.113 kb on - strand at 639.113 kb on - strand at 639.113 kb on - strand at 639.113 kb on - strand at 639.113 kb on - strand at 639.113 kb on - strand at 639.212 kb on + strand, within MPMX19_04278 at 639.212 kb on + strand, within MPMX19_04278 at 639.212 kb on + strand, within MPMX19_04278 at 639.212 kb on + strand, within MPMX19_04278 at 639.212 kb on + strand, within MPMX19_04278 at 639.213 kb on - strand, within MPMX19_04278 at 639.213 kb on - strand, within MPMX19_04278 at 639.213 kb on - strand, within MPMX19_04278 at 639.213 kb on - strand, within MPMX19_04278 at 639.213 kb on - strand, within MPMX19_04278 at 639.260 kb on + strand, within MPMX19_04278 at 639.261 kb on - strand, within MPMX19_04278 at 639.261 kb on - strand, within MPMX19_04278 at 639.261 kb on - strand, within MPMX19_04278 at 639.356 kb on + strand, within MPMX19_04278 at 639.356 kb on + strand, within MPMX19_04278 at 639.356 kb on + strand, within MPMX19_04278 at 639.356 kb on + strand, within MPMX19_04278 at 639.356 kb on + strand, within MPMX19_04278 at 639.357 kb on - strand, within MPMX19_04278 at 639.357 kb on - strand, within MPMX19_04278 at 639.357 kb on - strand, within MPMX19_04278 at 639.357 kb on - strand, within MPMX19_04278 at 639.357 kb on - strand, within MPMX19_04278 at 639.357 kb on - strand, within MPMX19_04278 at 639.357 kb on - strand, within MPMX19_04278 at 639.497 kb on + strand, within MPMX19_04278 at 639.497 kb on + strand, within MPMX19_04278 at 639.497 kb on + strand, within MPMX19_04278 at 639.498 kb on - strand, within MPMX19_04278 at 639.498 kb on - strand, within MPMX19_04278 at 639.498 kb on - strand, within MPMX19_04278 at 639.498 kb on - strand, within MPMX19_04278 at 639.498 kb on - strand, within MPMX19_04278 at 639.498 kb on - strand, within MPMX19_04278 at 639.506 kb on + strand, within MPMX19_04278 at 639.506 kb on + strand, within MPMX19_04278 at 639.506 kb on + strand, within MPMX19_04278 at 639.506 kb on + strand, within MPMX19_04278 at 639.506 kb on + strand, within MPMX19_04278 at 639.506 kb on + strand, within MPMX19_04278 at 639.506 kb on + strand, within MPMX19_04278 at 639.507 kb on - strand, within MPMX19_04278 at 639.507 kb on - strand, within MPMX19_04278 at 639.507 kb on - strand, within MPMX19_04278 at 639.507 kb on - strand, within MPMX19_04278 at 639.536 kb on + strand, within MPMX19_04278 at 639.536 kb on + strand, within MPMX19_04278 at 639.537 kb on - strand, within MPMX19_04278 at 639.537 kb on - strand, within MPMX19_04278 at 639.537 kb on - strand, within MPMX19_04278 at 639.537 kb on - strand, within MPMX19_04278 at 639.537 kb on - strand, within MPMX19_04278 at 639.537 kb on - strand, within MPMX19_04278 at 639.537 kb on - strand, within MPMX19_04278 at 639.537 kb on - strand, within MPMX19_04278 at 639.788 kb on - strand at 639.943 kb on + strand, within MPMX19_04279 at 639.943 kb on + strand, within MPMX19_04279 at 639.943 kb on + strand, within MPMX19_04279 at 639.944 kb on - strand, within MPMX19_04279 at 639.944 kb on - strand, within MPMX19_04279 at 639.944 kb on - strand, within MPMX19_04279 at 639.944 kb on - strand, within MPMX19_04279 at 639.944 kb on - strand, within MPMX19_04279 at 640.042 kb on + strand, within MPMX19_04279 at 640.042 kb on + strand, within MPMX19_04279 at 640.042 kb on + strand, within MPMX19_04279 at 640.042 kb on + strand, within MPMX19_04279 at 640.042 kb on + strand, within MPMX19_04279 at 640.042 kb on + strand, within MPMX19_04279 at 640.042 kb on + strand, within MPMX19_04279 at 640.042 kb on + strand, within MPMX19_04279 at 640.042 kb on + strand, within MPMX19_04279 at 640.042 kb on + strand, within MPMX19_04279 at 640.042 kb on + strand, within MPMX19_04279 at 640.042 kb on + strand, within MPMX19_04279 at 640.042 kb on + strand, within MPMX19_04279 at 640.042 kb on + strand, within MPMX19_04279 at 640.042 kb on + strand, within MPMX19_04279 at 640.042 kb on + strand, within MPMX19_04279 at 640.042 kb on + strand, within MPMX19_04279 at 640.042 kb on + strand, within MPMX19_04279 at 640.043 kb on - strand, within MPMX19_04279 at 640.043 kb on - strand, within MPMX19_04279 at 640.043 kb on - strand, within MPMX19_04279 at 640.043 kb on - strand, within MPMX19_04279 at 640.043 kb on - strand, within MPMX19_04279 at 640.043 kb on - strand, within MPMX19_04279 at 640.043 kb on - strand, within MPMX19_04279 at 640.043 kb on - strand, within MPMX19_04279 at 640.043 kb on - strand, within MPMX19_04279 at 640.043 kb on - strand, within MPMX19_04279 at 640.043 kb on - strand, within MPMX19_04279 at 640.043 kb on - strand, within MPMX19_04279 at 640.140 kb on + strand at 640.140 kb on + strand at 640.140 kb on + strand at 640.140 kb on + strand at 640.140 kb on + strand at 640.140 kb on + strand at 640.140 kb on + strand at 640.140 kb on + strand at 640.140 kb on + strand at 640.140 kb on + strand at 640.140 kb on + strand at 640.140 kb on + strand at 640.140 kb on + strand at 640.140 kb on + strand at 640.140 kb on + strand at 640.141 kb on - strand at 640.141 kb on - strand at 640.141 kb on - strand at 640.141 kb on - strand at 640.141 kb on - strand at 640.141 kb on - strand at 640.141 kb on - strand at 640.141 kb on - strand at 640.141 kb on - strand at 640.141 kb on - strand at 640.141 kb on - strand at 640.141 kb on - strand at 640.156 kb on + strand at 640.157 kb on - strand at 640.157 kb on - strand at 640.157 kb on - strand at 640.157 kb on - strand at 640.157 kb on - strand at 640.372 kb on + strand, within MPMX19_04280 at 640.372 kb on + strand, within MPMX19_04280 at 640.372 kb on + strand, within MPMX19_04280 at 640.373 kb on - strand, within MPMX19_04280 at 640.373 kb on - strand, within MPMX19_04280 at 640.373 kb on - strand, within MPMX19_04280 at 640.402 kb on + strand, within MPMX19_04280 at 640.403 kb on - strand, within MPMX19_04280 at 640.783 kb on + strand, within MPMX19_04281 at 640.783 kb on + strand, within MPMX19_04281 at 640.783 kb on + strand, within MPMX19_04281 at 640.783 kb on + strand, within MPMX19_04281 at 640.784 kb on - strand, within MPMX19_04281 at 640.807 kb on + strand, within MPMX19_04281 at 640.807 kb on + strand, within MPMX19_04281 at 640.807 kb on + strand, within MPMX19_04281 at 640.807 kb on + strand, within MPMX19_04281 at 640.832 kb on + strand, within MPMX19_04281 at 640.832 kb on + strand, within MPMX19_04281 at 640.832 kb on + strand, within MPMX19_04281 at 640.832 kb on + strand, within MPMX19_04281 at 640.832 kb on + strand, within MPMX19_04281 at 640.832 kb on + strand, within MPMX19_04281 at 640.832 kb on + strand, within MPMX19_04281 at 640.834 kb on + strand, within MPMX19_04281 at 640.834 kb on + strand, within MPMX19_04281 at 640.834 kb on + strand, within MPMX19_04281 at 640.834 kb on + strand, within MPMX19_04281 at 640.834 kb on + strand, within MPMX19_04281 at 640.834 kb on + strand, within MPMX19_04281 at 640.834 kb on + strand, within MPMX19_04281 at 640.834 kb on + strand, within MPMX19_04281 at 640.834 kb on + strand, within MPMX19_04281 at 640.834 kb on + strand, within MPMX19_04281 at 640.834 kb on + strand, within MPMX19_04281 at 640.834 kb on + strand, within MPMX19_04281 at 640.834 kb on + strand, within MPMX19_04281 at 640.834 kb on + strand, within MPMX19_04281 at 640.834 kb on + strand, within MPMX19_04281 at 640.834 kb on + strand, within MPMX19_04281 at 640.834 kb on + strand, within MPMX19_04281 at 640.834 kb on + strand, within MPMX19_04281 at 640.834 kb on + strand, within MPMX19_04281 at 640.834 kb on + strand, within MPMX19_04281 at 640.835 kb on - strand, within MPMX19_04281 at 641.005 kb on + strand, within MPMX19_04281 at 641.005 kb on + strand, within MPMX19_04281 at 641.005 kb on + strand, within MPMX19_04281 at 641.005 kb on + strand, within MPMX19_04281 at 641.005 kb on + strand, within MPMX19_04281 at 641.005 kb on + strand, within MPMX19_04281 at 641.005 kb on + strand, within MPMX19_04281 at 641.005 kb on + strand, within MPMX19_04281 at 641.005 kb on + strand, within MPMX19_04281 at 641.006 kb on - strand, within MPMX19_04281 at 641.006 kb on - strand, within MPMX19_04281 at 641.006 kb on - strand, within MPMX19_04281 at 641.065 kb on + strand, within MPMX19_04281 at 641.065 kb on + strand, within MPMX19_04281 at 641.066 kb on - strand, within MPMX19_04281 at 641.066 kb on - strand, within MPMX19_04281 at 641.066 kb on - strand, within MPMX19_04281 at 641.066 kb on - strand, within MPMX19_04281 at 641.066 kb on - strand, within MPMX19_04281
Per-strain Table
Position Strand Gene LocusTag Fraction NF remove 639,112 + -1.2 639,112 + -0.7 639,112 + +0.2 639,112 + -1.0 639,112 + -2.3 639,112 + +0.1 639,112 + -0.9 639,112 + -0.7 639,112 + -1.7 639,113 - -0.0 639,113 - +0.5 639,113 - +0.2 639,113 - -0.4 639,113 - +0.4 639,113 - -1.6 639,113 - -1.5 639,113 - +0.3 639,113 - -0.0 639,113 - +0.2 639,113 - -0.5 639,113 - -2.7 639,113 - +0.0 639,113 - -0.5 639,212 + MPMX19_04278 0.15 +0.8 639,212 + MPMX19_04278 0.15 +0.6 639,212 + MPMX19_04278 0.15 +0.4 639,212 + MPMX19_04278 0.15 -0.4 639,212 + MPMX19_04278 0.15 -0.4 639,213 - MPMX19_04278 0.15 -0.2 639,213 - MPMX19_04278 0.15 -0.0 639,213 - MPMX19_04278 0.15 -0.7 639,213 - MPMX19_04278 0.15 -0.3 639,213 - MPMX19_04278 0.15 -0.9 639,260 + MPMX19_04278 0.22 +0.2 639,261 - MPMX19_04278 0.22 +0.2 639,261 - MPMX19_04278 0.22 +0.8 639,261 - MPMX19_04278 0.22 -0.4 639,356 + MPMX19_04278 0.37 -0.2 639,356 + MPMX19_04278 0.37 -0.5 639,356 + MPMX19_04278 0.37 -1.5 639,356 + MPMX19_04278 0.37 +0.2 639,356 + MPMX19_04278 0.37 -0.1 639,357 - MPMX19_04278 0.38 -0.4 639,357 - MPMX19_04278 0.38 -0.5 639,357 - MPMX19_04278 0.38 +0.2 639,357 - MPMX19_04278 0.38 +0.6 639,357 - MPMX19_04278 0.38 +0.2 639,357 - MPMX19_04278 0.38 +0.3 639,357 - MPMX19_04278 0.38 -0.0 639,497 + MPMX19_04278 0.60 -0.5 639,497 + MPMX19_04278 0.60 +0.6 639,497 + MPMX19_04278 0.60 -0.2 639,498 - MPMX19_04278 0.60 -0.2 639,498 - MPMX19_04278 0.60 +0.3 639,498 - MPMX19_04278 0.60 -1.5 639,498 - MPMX19_04278 0.60 -0.9 639,498 - MPMX19_04278 0.60 -1.2 639,498 - MPMX19_04278 0.60 -0.9 639,506 + MPMX19_04278 0.61 -0.5 639,506 + MPMX19_04278 0.61 -1.8 639,506 + MPMX19_04278 0.61 -0.4 639,506 + MPMX19_04278 0.61 -0.2 639,506 + MPMX19_04278 0.61 -1.4 639,506 + MPMX19_04278 0.61 -0.5 639,506 + MPMX19_04278 0.61 +0.6 639,507 - MPMX19_04278 0.61 +1.2 639,507 - MPMX19_04278 0.61 -0.4 639,507 - MPMX19_04278 0.61 +0.6 639,507 - MPMX19_04278 0.61 -0.0 639,536 + MPMX19_04278 0.66 -0.8 639,536 + MPMX19_04278 0.66 -1.2 639,537 - MPMX19_04278 0.66 -0.5 639,537 - MPMX19_04278 0.66 +0.2 639,537 - MPMX19_04278 0.66 +0.6 639,537 - MPMX19_04278 0.66 -0.8 639,537 - MPMX19_04278 0.66 -0.7 639,537 - MPMX19_04278 0.66 +0.2 639,537 - MPMX19_04278 0.66 -1.0 639,537 - MPMX19_04278 0.66 -1.2 639,788 - +0.4 639,943 + MPMX19_04279 0.21 +0.5 639,943 + MPMX19_04279 0.21 -0.6 639,943 + MPMX19_04279 0.21 -0.2 639,944 - MPMX19_04279 0.21 -0.2 639,944 - MPMX19_04279 0.21 +0.3 639,944 - MPMX19_04279 0.21 -0.6 639,944 - MPMX19_04279 0.21 +0.2 639,944 - MPMX19_04279 0.21 +1.2 640,042 + MPMX19_04279 0.59 -0.8 640,042 + MPMX19_04279 0.59 -0.1 640,042 + MPMX19_04279 0.59 -1.4 640,042 + MPMX19_04279 0.59 +1.0 640,042 + MPMX19_04279 0.59 -0.1 640,042 + MPMX19_04279 0.59 +0.4 640,042 + MPMX19_04279 0.59 -0.2 640,042 + MPMX19_04279 0.59 +0.7 640,042 + MPMX19_04279 0.59 -1.4 640,042 + MPMX19_04279 0.59 -1.0 640,042 + MPMX19_04279 0.59 -0.1 640,042 + MPMX19_04279 0.59 -1.3 640,042 + MPMX19_04279 0.59 +1.2 640,042 + MPMX19_04279 0.59 +0.2 640,042 + MPMX19_04279 0.59 -1.4 640,042 + MPMX19_04279 0.59 -1.0 640,042 + MPMX19_04279 0.59 +1.2 640,042 + MPMX19_04279 0.59 -0.2 640,043 - MPMX19_04279 0.59 -1.6 640,043 - MPMX19_04279 0.59 +0.5 640,043 - MPMX19_04279 0.59 +0.9 640,043 - MPMX19_04279 0.59 -0.1 640,043 - MPMX19_04279 0.59 +0.6 640,043 - MPMX19_04279 0.59 -1.3 640,043 - MPMX19_04279 0.59 +0.3 640,043 - MPMX19_04279 0.59 -1.4 640,043 - MPMX19_04279 0.59 -1.4 640,043 - MPMX19_04279 0.59 +0.2 640,043 - MPMX19_04279 0.59 +1.5 640,043 - MPMX19_04279 0.59 +1.8 640,140 + +0.8 640,140 + -1.9 640,140 + -0.4 640,140 + +0.9 640,140 + +0.5 640,140 + -0.6 640,140 + -0.3 640,140 + +0.8 640,140 + +0.4 640,140 + -0.2 640,140 + -0.5 640,140 + +0.6 640,140 + +0.5 640,140 + -1.8 640,140 + -1.7 640,141 - -0.1 640,141 - -0.2 640,141 - -0.3 640,141 - -0.8 640,141 - +0.9 640,141 - -0.6 640,141 - -2.1 640,141 - -0.2 640,141 - +0.2 640,141 - -0.4 640,141 - -0.3 640,141 - -0.8 640,156 + -0.7 640,157 - -0.6 640,157 - +1.3 640,157 - +0.6 640,157 - +1.2 640,157 - +0.2 640,372 + MPMX19_04280 0.56 -1.3 640,372 + MPMX19_04280 0.56 -0.2 640,372 + MPMX19_04280 0.56 -0.3 640,373 - MPMX19_04280 0.56 +0.0 640,373 - MPMX19_04280 0.56 -1.5 640,373 - MPMX19_04280 0.56 -1.2 640,402 + MPMX19_04280 0.64 -0.2 640,403 - MPMX19_04280 0.65 +0.2 640,783 + MPMX19_04281 0.28 +0.7 640,783 + MPMX19_04281 0.28 -1.2 640,783 + MPMX19_04281 0.28 -0.9 640,783 + MPMX19_04281 0.28 +0.9 640,784 - MPMX19_04281 0.28 -0.6 640,807 + MPMX19_04281 0.31 -0.6 640,807 + MPMX19_04281 0.31 -1.9 640,807 + MPMX19_04281 0.31 -1.2 640,807 + MPMX19_04281 0.31 +0.2 640,832 + MPMX19_04281 0.34 -0.0 640,832 + MPMX19_04281 0.34 +1.5 640,832 + MPMX19_04281 0.34 +0.4 640,832 + MPMX19_04281 0.34 +0.4 640,832 + MPMX19_04281 0.34 -1.9 640,832 + MPMX19_04281 0.34 -1.6 640,832 + MPMX19_04281 0.34 -0.8 640,834 + MPMX19_04281 0.34 -0.2 640,834 + MPMX19_04281 0.34 -1.4 640,834 + MPMX19_04281 0.34 +0.4 640,834 + MPMX19_04281 0.34 +1.5 640,834 + MPMX19_04281 0.34 -0.9 640,834 + MPMX19_04281 0.34 -0.3 640,834 + MPMX19_04281 0.34 -0.3 640,834 + MPMX19_04281 0.34 -0.2 640,834 + MPMX19_04281 0.34 -0.7 640,834 + MPMX19_04281 0.34 -0.6 640,834 + MPMX19_04281 0.34 -0.0 640,834 + MPMX19_04281 0.34 +0.4 640,834 + MPMX19_04281 0.34 -0.5 640,834 + MPMX19_04281 0.34 -0.2 640,834 + MPMX19_04281 0.34 +0.4 640,834 + MPMX19_04281 0.34 -0.4 640,834 + MPMX19_04281 0.34 -0.8 640,834 + MPMX19_04281 0.34 -0.6 640,834 + MPMX19_04281 0.34 +0.2 640,834 + MPMX19_04281 0.34 -0.2 640,835 - MPMX19_04281 0.34 +1.8 641,005 + MPMX19_04281 0.53 +1.4 641,005 + MPMX19_04281 0.53 +0.2 641,005 + MPMX19_04281 0.53 -2.2 641,005 + MPMX19_04281 0.53 +0.8 641,005 + MPMX19_04281 0.53 -2.0 641,005 + MPMX19_04281 0.53 +0.4 641,005 + MPMX19_04281 0.53 +0.9 641,005 + MPMX19_04281 0.53 -0.7 641,005 + MPMX19_04281 0.53 -1.0 641,006 - MPMX19_04281 0.53 +0.8 641,006 - MPMX19_04281 0.53 -0.8 641,006 - MPMX19_04281 0.53 +0.2 641,065 + MPMX19_04281 0.60 -1.2 641,065 + MPMX19_04281 0.60 -1.2 641,066 - MPMX19_04281 0.60 -0.0 641,066 - MPMX19_04281 0.60 +0.8 641,066 - MPMX19_04281 0.60 -1.7 641,066 - MPMX19_04281 0.60 +0.4 641,066 - MPMX19_04281 0.60 +0.2
Or see this region's nucleotide sequence