Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_04259

Experiment: NF

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX19_04258 and MPMX19_04259 overlap by 8 nucleotidesMPMX19_04259 and MPMX19_04260 are separated by 180 nucleotides MPMX19_04258: MPMX19_04258 - hypothetical protein, at 618,326 to 619,435 _04258 MPMX19_04259: MPMX19_04259 - hypothetical protein, at 619,428 to 619,937 _04259 MPMX19_04260: MPMX19_04260 - Acetyl-coenzyme A synthetase, at 620,118 to 621,734 _04260 Position (kb) 619 620Strain fitness (log2 ratio) -2 -1 0 1 2 3at 618.596 kb on + strand, within MPMX19_04258at 618.615 kb on - strand, within MPMX19_04258at 618.734 kb on + strand, within MPMX19_04258at 618.735 kb on - strand, within MPMX19_04258at 618.779 kb on + strand, within MPMX19_04258at 618.780 kb on - strand, within MPMX19_04258at 619.415 kb on + strandat 619.424 kb on + strandat 619.424 kb on + strandat 619.424 kb on + strandat 619.519 kb on + strand, within MPMX19_04259at 619.520 kb on - strand, within MPMX19_04259at 619.568 kb on + strand, within MPMX19_04259at 619.569 kb on - strand, within MPMX19_04259at 619.569 kb on - strand, within MPMX19_04259at 619.570 kb on + strand, within MPMX19_04259at 619.570 kb on + strand, within MPMX19_04259at 619.570 kb on + strand, within MPMX19_04259at 619.570 kb on + strand, within MPMX19_04259at 619.570 kb on + strand, within MPMX19_04259at 619.570 kb on + strand, within MPMX19_04259at 619.570 kb on + strand, within MPMX19_04259at 619.570 kb on + strand, within MPMX19_04259at 619.570 kb on + strand, within MPMX19_04259at 619.570 kb on + strand, within MPMX19_04259at 619.570 kb on + strand, within MPMX19_04259at 619.570 kb on + strand, within MPMX19_04259at 619.570 kb on + strand, within MPMX19_04259at 619.570 kb on + strand, within MPMX19_04259at 619.570 kb on + strand, within MPMX19_04259at 619.570 kb on + strand, within MPMX19_04259at 619.570 kb on + strand, within MPMX19_04259at 619.570 kb on + strand, within MPMX19_04259at 619.570 kb on + strand, within MPMX19_04259at 619.570 kb on + strand, within MPMX19_04259at 619.570 kb on + strand, within MPMX19_04259at 619.570 kb on + strand, within MPMX19_04259at 619.570 kb on + strand, within MPMX19_04259at 619.570 kb on + strand, within MPMX19_04259at 619.570 kb on + strand, within MPMX19_04259at 619.570 kb on + strand, within MPMX19_04259at 619.570 kb on + strand, within MPMX19_04259at 619.570 kb on + strand, within MPMX19_04259at 619.570 kb on + strand, within MPMX19_04259at 619.570 kb on + strand, within MPMX19_04259at 619.571 kb on - strand, within MPMX19_04259at 619.571 kb on - strand, within MPMX19_04259at 619.571 kb on - strand, within MPMX19_04259at 619.571 kb on - strand, within MPMX19_04259at 619.571 kb on - strand, within MPMX19_04259at 619.571 kb on - strand, within MPMX19_04259at 619.571 kb on - strand, within MPMX19_04259at 619.571 kb on - strand, within MPMX19_04259at 619.571 kb on - strand, within MPMX19_04259at 619.571 kb on - strand, within MPMX19_04259at 619.571 kb on - strand, within MPMX19_04259at 619.571 kb on - strand, within MPMX19_04259at 619.571 kb on - strand, within MPMX19_04259at 619.571 kb on - strand, within MPMX19_04259at 619.571 kb on - strand, within MPMX19_04259at 619.571 kb on - strand, within MPMX19_04259at 619.571 kb on - strand, within MPMX19_04259at 619.571 kb on - strand, within MPMX19_04259at 619.571 kb on - strand, within MPMX19_04259at 619.571 kb on - strand, within MPMX19_04259at 619.571 kb on - strand, within MPMX19_04259at 619.571 kb on - strand, within MPMX19_04259at 619.571 kb on - strand, within MPMX19_04259at 619.571 kb on - strand, within MPMX19_04259at 619.571 kb on - strand, within MPMX19_04259at 619.571 kb on - strand, within MPMX19_04259at 619.571 kb on - strand, within MPMX19_04259at 619.571 kb on - strand, within MPMX19_04259at 619.571 kb on - strand, within MPMX19_04259at 619.571 kb on - strand, within MPMX19_04259at 619.579 kb on + strand, within MPMX19_04259at 619.579 kb on + strand, within MPMX19_04259at 619.579 kb on + strand, within MPMX19_04259at 619.579 kb on + strand, within MPMX19_04259at 619.580 kb on - strand, within MPMX19_04259at 619.580 kb on - strand, within MPMX19_04259at 619.580 kb on - strand, within MPMX19_04259at 619.580 kb on - strand, within MPMX19_04259at 619.580 kb on - strand, within MPMX19_04259at 619.633 kb on + strand, within MPMX19_04259at 619.633 kb on + strand, within MPMX19_04259at 619.633 kb on + strand, within MPMX19_04259at 619.633 kb on + strand, within MPMX19_04259at 619.633 kb on + strand, within MPMX19_04259at 619.634 kb on - strand, within MPMX19_04259at 619.634 kb on - strand, within MPMX19_04259at 619.634 kb on - strand, within MPMX19_04259at 619.634 kb on - strand, within MPMX19_04259at 619.634 kb on - strand, within MPMX19_04259at 619.634 kb on - strand, within MPMX19_04259at 619.660 kb on + strand, within MPMX19_04259at 619.660 kb on + strand, within MPMX19_04259at 619.660 kb on + strand, within MPMX19_04259at 619.660 kb on + strand, within MPMX19_04259at 619.660 kb on + strand, within MPMX19_04259at 619.660 kb on + strand, within MPMX19_04259at 619.661 kb on - strand, within MPMX19_04259at 619.661 kb on - strand, within MPMX19_04259at 619.661 kb on - strand, within MPMX19_04259at 619.661 kb on - strand, within MPMX19_04259at 619.661 kb on - strand, within MPMX19_04259at 619.661 kb on - strand, within MPMX19_04259at 619.661 kb on - strand, within MPMX19_04259at 619.661 kb on - strand, within MPMX19_04259at 619.661 kb on - strand, within MPMX19_04259at 619.661 kb on - strand, within MPMX19_04259at 619.661 kb on - strand, within MPMX19_04259at 619.843 kb on + strand, within MPMX19_04259at 619.844 kb on - strand, within MPMX19_04259at 619.856 kb on - strand, within MPMX19_04259at 620.022 kb on + strandat 620.022 kb on + strandat 620.022 kb on + strandat 620.022 kb on + strandat 620.022 kb on + strandat 620.022 kb on + strandat 620.023 kb on - strandat 620.023 kb on - strandat 620.023 kb on - strandat 620.023 kb on - strandat 620.023 kb on - strandat 620.059 kb on - strandat 620.059 kb on - strandat 620.059 kb on - strandat 620.059 kb on - strandat 620.059 kb on - strandat 620.059 kb on - strandat 620.059 kb on - strandat 620.059 kb on - strandat 620.059 kb on - strandat 620.150 kb on - strandat 620.184 kb on + strandat 620.184 kb on + strandat 620.184 kb on + strandat 620.184 kb on + strandat 620.185 kb on - strandat 620.185 kb on - strandat 620.185 kb on - strandat 620.185 kb on - strandat 620.280 kb on + strand, within MPMX19_04260at 620.281 kb on - strand, within MPMX19_04260at 620.281 kb on - strand, within MPMX19_04260at 620.281 kb on - strand, within MPMX19_04260at 620.281 kb on - strand, within MPMX19_04260at 620.281 kb on - strand, within MPMX19_04260at 620.415 kb on + strand, within MPMX19_04260at 620.415 kb on + strand, within MPMX19_04260at 620.415 kb on + strand, within MPMX19_04260at 620.416 kb on - strand, within MPMX19_04260at 620.416 kb on - strand, within MPMX19_04260at 620.416 kb on - strand, within MPMX19_04260at 620.416 kb on - strand, within MPMX19_04260at 620.476 kb on - strand, within MPMX19_04260at 620.691 kb on + strand, within MPMX19_04260at 620.691 kb on + strand, within MPMX19_04260at 620.691 kb on + strand, within MPMX19_04260at 620.691 kb on + strand, within MPMX19_04260at 620.691 kb on + strand, within MPMX19_04260at 620.691 kb on + strand, within MPMX19_04260at 620.691 kb on + strand, within MPMX19_04260at 620.691 kb on + strand, within MPMX19_04260at 620.691 kb on + strand, within MPMX19_04260at 620.691 kb on + strand, within MPMX19_04260at 620.691 kb on + strand, within MPMX19_04260at 620.691 kb on + strand, within MPMX19_04260at 620.691 kb on + strand, within MPMX19_04260at 620.691 kb on + strand, within MPMX19_04260at 620.691 kb on + strand, within MPMX19_04260at 620.691 kb on + strand, within MPMX19_04260at 620.691 kb on + strand, within MPMX19_04260at 620.691 kb on + strand, within MPMX19_04260at 620.691 kb on + strand, within MPMX19_04260at 620.692 kb on + strand, within MPMX19_04260at 620.692 kb on - strand, within MPMX19_04260at 620.692 kb on - strand, within MPMX19_04260at 620.692 kb on - strand, within MPMX19_04260at 620.692 kb on - strand, within MPMX19_04260at 620.692 kb on - strand, within MPMX19_04260at 620.692 kb on - strand, within MPMX19_04260at 620.692 kb on - strand, within MPMX19_04260at 620.692 kb on - strand, within MPMX19_04260at 620.692 kb on - strand, within MPMX19_04260at 620.692 kb on - strand, within MPMX19_04260at 620.692 kb on - strand, within MPMX19_04260at 620.692 kb on - strand, within MPMX19_04260at 620.692 kb on - strand, within MPMX19_04260at 620.692 kb on - strand, within MPMX19_04260at 620.692 kb on - strand, within MPMX19_04260at 620.692 kb on - strand, within MPMX19_04260at 620.692 kb on - strand, within MPMX19_04260at 620.692 kb on - strand, within MPMX19_04260at 620.692 kb on - strand, within MPMX19_04260

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction NF
remove
618,596 + MPMX19_04258 0.24 +0.8
618,615 - MPMX19_04258 0.26 -0.2
618,734 + MPMX19_04258 0.37 -1.9
618,735 - MPMX19_04258 0.37 -1.4
618,779 + MPMX19_04258 0.41 -1.6
618,780 - MPMX19_04258 0.41 -1.5
619,415 + -1.2
619,424 + -0.7
619,424 + -0.8
619,424 + +0.5
619,519 + MPMX19_04259 0.18 -0.2
619,520 - MPMX19_04259 0.18 +0.9
619,568 + MPMX19_04259 0.27 +0.4
619,569 - MPMX19_04259 0.28 -1.4
619,569 - MPMX19_04259 0.28 -1.3
619,570 + MPMX19_04259 0.28 -1.1
619,570 + MPMX19_04259 0.28 -0.0
619,570 + MPMX19_04259 0.28 -0.9
619,570 + MPMX19_04259 0.28 +0.2
619,570 + MPMX19_04259 0.28 -1.7
619,570 + MPMX19_04259 0.28 +0.4
619,570 + MPMX19_04259 0.28 -2.1
619,570 + MPMX19_04259 0.28 -1.0
619,570 + MPMX19_04259 0.28 -1.0
619,570 + MPMX19_04259 0.28 -2.0
619,570 + MPMX19_04259 0.28 -0.1
619,570 + MPMX19_04259 0.28 -0.4
619,570 + MPMX19_04259 0.28 -0.6
619,570 + MPMX19_04259 0.28 -1.1
619,570 + MPMX19_04259 0.28 -0.5
619,570 + MPMX19_04259 0.28 -0.2
619,570 + MPMX19_04259 0.28 -0.0
619,570 + MPMX19_04259 0.28 -1.3
619,570 + MPMX19_04259 0.28 -0.1
619,570 + MPMX19_04259 0.28 -0.6
619,570 + MPMX19_04259 0.28 -0.2
619,570 + MPMX19_04259 0.28 +1.1
619,570 + MPMX19_04259 0.28 -0.8
619,570 + MPMX19_04259 0.28 +0.8
619,570 + MPMX19_04259 0.28 -1.0
619,570 + MPMX19_04259 0.28 -1.0
619,570 + MPMX19_04259 0.28 -0.8
619,570 + MPMX19_04259 0.28 +0.2
619,570 + MPMX19_04259 0.28 -0.4
619,570 + MPMX19_04259 0.28 +0.5
619,571 - MPMX19_04259 0.28 -0.8
619,571 - MPMX19_04259 0.28 -1.6
619,571 - MPMX19_04259 0.28 -0.4
619,571 - MPMX19_04259 0.28 -1.2
619,571 - MPMX19_04259 0.28 -0.8
619,571 - MPMX19_04259 0.28 -0.0
619,571 - MPMX19_04259 0.28 +0.1
619,571 - MPMX19_04259 0.28 -0.5
619,571 - MPMX19_04259 0.28 +0.4
619,571 - MPMX19_04259 0.28 -0.7
619,571 - MPMX19_04259 0.28 -2.4
619,571 - MPMX19_04259 0.28 -0.4
619,571 - MPMX19_04259 0.28 -1.9
619,571 - MPMX19_04259 0.28 -1.2
619,571 - MPMX19_04259 0.28 -0.6
619,571 - MPMX19_04259 0.28 +0.1
619,571 - MPMX19_04259 0.28 -0.4
619,571 - MPMX19_04259 0.28 +0.0
619,571 - MPMX19_04259 0.28 -0.8
619,571 - MPMX19_04259 0.28 -0.0
619,571 - MPMX19_04259 0.28 -1.5
619,571 - MPMX19_04259 0.28 -1.6
619,571 - MPMX19_04259 0.28 +0.3
619,571 - MPMX19_04259 0.28 +0.6
619,571 - MPMX19_04259 0.28 -0.1
619,571 - MPMX19_04259 0.28 +0.4
619,571 - MPMX19_04259 0.28 -1.4
619,571 - MPMX19_04259 0.28 -0.1
619,571 - MPMX19_04259 0.28 +0.9
619,571 - MPMX19_04259 0.28 -0.6
619,579 + MPMX19_04259 0.30 +0.4
619,579 + MPMX19_04259 0.30 -1.7
619,579 + MPMX19_04259 0.30 -0.7
619,579 + MPMX19_04259 0.30 -1.3
619,580 - MPMX19_04259 0.30 -1.2
619,580 - MPMX19_04259 0.30 +0.2
619,580 - MPMX19_04259 0.30 +0.0
619,580 - MPMX19_04259 0.30 -1.6
619,580 - MPMX19_04259 0.30 -0.7
619,633 + MPMX19_04259 0.40 +0.7
619,633 + MPMX19_04259 0.40 -0.3
619,633 + MPMX19_04259 0.40 -0.0
619,633 + MPMX19_04259 0.40 -1.6
619,633 + MPMX19_04259 0.40 +0.4
619,634 - MPMX19_04259 0.40 -2.6
619,634 - MPMX19_04259 0.40 -0.7
619,634 - MPMX19_04259 0.40 +0.6
619,634 - MPMX19_04259 0.40 -0.4
619,634 - MPMX19_04259 0.40 -0.5
619,634 - MPMX19_04259 0.40 -0.0
619,660 + MPMX19_04259 0.45 -1.2
619,660 + MPMX19_04259 0.45 -0.1
619,660 + MPMX19_04259 0.45 -1.3
619,660 + MPMX19_04259 0.45 +0.1
619,660 + MPMX19_04259 0.45 +0.8
619,660 + MPMX19_04259 0.45 +0.4
619,661 - MPMX19_04259 0.46 -1.0
619,661 - MPMX19_04259 0.46 +0.7
619,661 - MPMX19_04259 0.46 -0.5
619,661 - MPMX19_04259 0.46 -0.2
619,661 - MPMX19_04259 0.46 -0.1
619,661 - MPMX19_04259 0.46 -2.0
619,661 - MPMX19_04259 0.46 -1.4
619,661 - MPMX19_04259 0.46 -0.6
619,661 - MPMX19_04259 0.46 -0.9
619,661 - MPMX19_04259 0.46 -0.8
619,661 - MPMX19_04259 0.46 -1.4
619,843 + MPMX19_04259 0.81 -0.5
619,844 - MPMX19_04259 0.82 -1.2
619,856 - MPMX19_04259 0.84 -0.0
620,022 + +0.0
620,022 + -1.9
620,022 + +0.2
620,022 + +0.8
620,022 + +0.4
620,022 + +0.4
620,023 - -1.0
620,023 - -0.6
620,023 - -0.2
620,023 - +0.8
620,023 - -0.6
620,059 - -0.0
620,059 - -0.8
620,059 - +0.9
620,059 - -0.8
620,059 - -0.2
620,059 - +1.4
620,059 - -0.0
620,059 - -0.0
620,059 - -1.6
620,150 - -0.4
620,184 + -0.5
620,184 + +0.4
620,184 + -0.7
620,184 + -0.8
620,185 - -1.2
620,185 - -1.0
620,185 - +0.2
620,185 - +0.4
620,280 + MPMX19_04260 0.10 -0.9
620,281 - MPMX19_04260 0.10 +0.8
620,281 - MPMX19_04260 0.10 -1.0
620,281 - MPMX19_04260 0.10 -0.1
620,281 - MPMX19_04260 0.10 -0.8
620,281 - MPMX19_04260 0.10 -1.8
620,415 + MPMX19_04260 0.18 +0.4
620,415 + MPMX19_04260 0.18 +0.2
620,415 + MPMX19_04260 0.18 -0.9
620,416 - MPMX19_04260 0.18 +1.8
620,416 - MPMX19_04260 0.18 -0.7
620,416 - MPMX19_04260 0.18 -0.8
620,416 - MPMX19_04260 0.18 +1.4
620,476 - MPMX19_04260 0.22 -1.4
620,691 + MPMX19_04260 0.35 -0.7
620,691 + MPMX19_04260 0.35 -0.6
620,691 + MPMX19_04260 0.35 -1.5
620,691 + MPMX19_04260 0.35 +0.4
620,691 + MPMX19_04260 0.35 +0.2
620,691 + MPMX19_04260 0.35 -0.2
620,691 + MPMX19_04260 0.35 -0.5
620,691 + MPMX19_04260 0.35 +0.2
620,691 + MPMX19_04260 0.35 -0.5
620,691 + MPMX19_04260 0.35 +0.5
620,691 + MPMX19_04260 0.35 -0.7
620,691 + MPMX19_04260 0.35 +0.3
620,691 + MPMX19_04260 0.35 -0.9
620,691 + MPMX19_04260 0.35 -1.6
620,691 + MPMX19_04260 0.35 +0.5
620,691 + MPMX19_04260 0.35 -1.0
620,691 + MPMX19_04260 0.35 -0.1
620,691 + MPMX19_04260 0.35 -1.6
620,691 + MPMX19_04260 0.35 -0.6
620,692 + MPMX19_04260 0.35 -0.6
620,692 - MPMX19_04260 0.35 +1.0
620,692 - MPMX19_04260 0.35 -0.6
620,692 - MPMX19_04260 0.35 -0.1
620,692 - MPMX19_04260 0.35 -1.6
620,692 - MPMX19_04260 0.35 +0.3
620,692 - MPMX19_04260 0.35 -0.8
620,692 - MPMX19_04260 0.35 +1.5
620,692 - MPMX19_04260 0.35 -0.2
620,692 - MPMX19_04260 0.35 +1.2
620,692 - MPMX19_04260 0.35 -0.5
620,692 - MPMX19_04260 0.35 -1.0
620,692 - MPMX19_04260 0.35 -1.4
620,692 - MPMX19_04260 0.35 +0.5
620,692 - MPMX19_04260 0.35 +2.8
620,692 - MPMX19_04260 0.35 +0.6
620,692 - MPMX19_04260 0.35 -1.0
620,692 - MPMX19_04260 0.35 -0.6
620,692 - MPMX19_04260 0.35 -1.6
620,692 - MPMX19_04260 0.35 -1.2

Or see this region's nucleotide sequence