Experiment: NF
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_04215 and MPMX19_04216 are separated by 45 nucleotides MPMX19_04216 and MPMX19_04217 are separated by 51 nucleotides MPMX19_04217 and MPMX19_04218 are separated by 225 nucleotides
MPMX19_04215: MPMX19_04215 - hypothetical protein, at 556,181 to 556,756
_04215
MPMX19_04216: MPMX19_04216 - hypothetical protein, at 556,802 to 557,014
_04216
MPMX19_04217: MPMX19_04217 - Flagellar basal-body rod protein FlgC, at 557,066 to 557,497
_04217
MPMX19_04218: MPMX19_04218 - Protein phosphatase PrpC, at 557,723 to 558,538
_04218
Position (kb) 557
558 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 556.075 kb on + strand at 556.076 kb on - strand at 556.082 kb on + strand at 556.083 kb on - strand at 556.100 kb on + strand at 556.100 kb on + strand at 556.106 kb on + strand at 556.107 kb on - strand at 556.119 kb on + strand at 556.119 kb on + strand at 556.140 kb on + strand at 556.140 kb on + strand at 556.145 kb on + strand at 556.145 kb on + strand at 556.164 kb on - strand at 556.324 kb on + strand, within MPMX19_04215 at 556.324 kb on + strand, within MPMX19_04215 at 556.325 kb on - strand, within MPMX19_04215 at 556.325 kb on - strand, within MPMX19_04215 at 556.370 kb on + strand, within MPMX19_04215 at 556.370 kb on + strand, within MPMX19_04215 at 556.370 kb on + strand, within MPMX19_04215 at 556.370 kb on + strand, within MPMX19_04215 at 556.370 kb on + strand, within MPMX19_04215 at 556.370 kb on + strand, within MPMX19_04215 at 556.370 kb on + strand, within MPMX19_04215 at 556.370 kb on + strand, within MPMX19_04215 at 556.370 kb on + strand, within MPMX19_04215 at 556.371 kb on - strand, within MPMX19_04215 at 556.371 kb on - strand, within MPMX19_04215 at 556.371 kb on - strand, within MPMX19_04215 at 556.371 kb on - strand, within MPMX19_04215 at 556.371 kb on - strand, within MPMX19_04215 at 556.371 kb on - strand, within MPMX19_04215 at 556.371 kb on - strand, within MPMX19_04215 at 556.371 kb on - strand, within MPMX19_04215 at 556.371 kb on - strand, within MPMX19_04215 at 556.371 kb on - strand, within MPMX19_04215 at 556.466 kb on + strand, within MPMX19_04215 at 556.466 kb on + strand, within MPMX19_04215 at 556.466 kb on + strand, within MPMX19_04215 at 556.466 kb on + strand, within MPMX19_04215 at 556.466 kb on + strand, within MPMX19_04215 at 556.466 kb on + strand, within MPMX19_04215 at 556.466 kb on + strand, within MPMX19_04215 at 556.466 kb on + strand, within MPMX19_04215 at 556.466 kb on + strand, within MPMX19_04215 at 556.466 kb on + strand, within MPMX19_04215 at 556.466 kb on + strand, within MPMX19_04215 at 556.466 kb on + strand, within MPMX19_04215 at 556.467 kb on - strand, within MPMX19_04215 at 556.467 kb on - strand, within MPMX19_04215 at 556.467 kb on - strand, within MPMX19_04215 at 556.467 kb on - strand, within MPMX19_04215 at 556.467 kb on - strand, within MPMX19_04215 at 556.467 kb on - strand, within MPMX19_04215 at 556.467 kb on - strand, within MPMX19_04215 at 556.467 kb on - strand, within MPMX19_04215 at 556.467 kb on - strand, within MPMX19_04215 at 556.467 kb on - strand, within MPMX19_04215 at 556.577 kb on + strand, within MPMX19_04215 at 556.577 kb on + strand, within MPMX19_04215 at 556.577 kb on + strand, within MPMX19_04215 at 556.577 kb on + strand, within MPMX19_04215 at 556.577 kb on + strand, within MPMX19_04215 at 556.577 kb on + strand, within MPMX19_04215 at 556.577 kb on + strand, within MPMX19_04215 at 556.577 kb on + strand, within MPMX19_04215 at 556.577 kb on + strand, within MPMX19_04215 at 556.577 kb on + strand, within MPMX19_04215 at 556.577 kb on + strand, within MPMX19_04215 at 556.578 kb on - strand, within MPMX19_04215 at 556.578 kb on - strand, within MPMX19_04215 at 556.578 kb on - strand, within MPMX19_04215 at 556.578 kb on - strand, within MPMX19_04215 at 556.578 kb on - strand, within MPMX19_04215 at 556.578 kb on - strand, within MPMX19_04215 at 556.578 kb on - strand, within MPMX19_04215 at 556.578 kb on - strand, within MPMX19_04215 at 556.578 kb on - strand, within MPMX19_04215 at 556.578 kb on - strand, within MPMX19_04215 at 556.578 kb on - strand, within MPMX19_04215 at 556.578 kb on - strand, within MPMX19_04215 at 556.578 kb on - strand, within MPMX19_04215 at 556.578 kb on - strand, within MPMX19_04215 at 556.578 kb on - strand, within MPMX19_04215 at 556.578 kb on - strand, within MPMX19_04215 at 556.578 kb on - strand, within MPMX19_04215 at 556.578 kb on - strand, within MPMX19_04215 at 556.578 kb on - strand, within MPMX19_04215 at 556.578 kb on - strand, within MPMX19_04215 at 557.136 kb on + strand, within MPMX19_04217 at 557.136 kb on + strand, within MPMX19_04217 at 557.137 kb on - strand, within MPMX19_04217 at 557.137 kb on - strand, within MPMX19_04217 at 557.137 kb on - strand, within MPMX19_04217 at 557.164 kb on + strand, within MPMX19_04217 at 557.164 kb on + strand, within MPMX19_04217 at 557.164 kb on + strand, within MPMX19_04217 at 557.165 kb on - strand, within MPMX19_04217 at 557.165 kb on - strand, within MPMX19_04217 at 557.165 kb on - strand, within MPMX19_04217 at 557.165 kb on - strand, within MPMX19_04217 at 557.165 kb on - strand, within MPMX19_04217 at 557.165 kb on - strand, within MPMX19_04217 at 557.165 kb on - strand, within MPMX19_04217 at 557.238 kb on + strand, within MPMX19_04217 at 557.238 kb on + strand, within MPMX19_04217 at 557.238 kb on + strand, within MPMX19_04217 at 557.238 kb on + strand, within MPMX19_04217 at 557.238 kb on + strand, within MPMX19_04217 at 557.238 kb on + strand, within MPMX19_04217 at 557.238 kb on + strand, within MPMX19_04217 at 557.238 kb on + strand, within MPMX19_04217 at 557.238 kb on + strand, within MPMX19_04217 at 557.238 kb on + strand, within MPMX19_04217 at 557.238 kb on + strand, within MPMX19_04217 at 557.238 kb on + strand, within MPMX19_04217 at 557.238 kb on + strand, within MPMX19_04217 at 557.239 kb on - strand, within MPMX19_04217 at 557.239 kb on - strand, within MPMX19_04217 at 557.239 kb on - strand, within MPMX19_04217 at 557.239 kb on - strand, within MPMX19_04217 at 557.250 kb on + strand, within MPMX19_04217 at 557.250 kb on + strand, within MPMX19_04217 at 557.250 kb on + strand, within MPMX19_04217 at 557.250 kb on + strand, within MPMX19_04217 at 557.250 kb on + strand, within MPMX19_04217 at 557.250 kb on + strand, within MPMX19_04217 at 557.251 kb on - strand, within MPMX19_04217 at 557.251 kb on - strand, within MPMX19_04217 at 557.251 kb on - strand, within MPMX19_04217 at 557.251 kb on - strand, within MPMX19_04217 at 557.325 kb on + strand, within MPMX19_04217 at 557.325 kb on + strand, within MPMX19_04217 at 557.325 kb on + strand, within MPMX19_04217 at 557.325 kb on + strand, within MPMX19_04217 at 557.325 kb on + strand, within MPMX19_04217 at 557.326 kb on - strand, within MPMX19_04217 at 557.326 kb on - strand, within MPMX19_04217 at 557.326 kb on - strand, within MPMX19_04217 at 557.326 kb on - strand, within MPMX19_04217 at 557.458 kb on + strand at 557.458 kb on + strand at 557.459 kb on - strand at 557.497 kb on + strand at 557.497 kb on + strand at 557.498 kb on - strand at 557.510 kb on + strand at 557.510 kb on + strand at 557.510 kb on + strand at 557.510 kb on + strand at 557.510 kb on + strand at 557.510 kb on + strand at 557.510 kb on + strand at 557.510 kb on + strand at 557.511 kb on - strand at 557.511 kb on - strand at 557.511 kb on - strand at 557.511 kb on - strand at 557.511 kb on - strand at 557.511 kb on - strand at 557.511 kb on - strand at 557.553 kb on + strand at 557.579 kb on + strand at 557.579 kb on + strand at 557.579 kb on + strand at 557.579 kb on + strand at 557.579 kb on + strand at 557.579 kb on + strand at 557.580 kb on - strand at 557.580 kb on - strand at 557.580 kb on - strand at 558.059 kb on + strand, within MPMX19_04218 at 558.059 kb on + strand, within MPMX19_04218 at 558.059 kb on + strand, within MPMX19_04218 at 558.059 kb on + strand, within MPMX19_04218 at 558.059 kb on + strand, within MPMX19_04218 at 558.060 kb on - strand, within MPMX19_04218 at 558.060 kb on - strand, within MPMX19_04218 at 558.060 kb on - strand, within MPMX19_04218 at 558.146 kb on + strand, within MPMX19_04218 at 558.146 kb on + strand, within MPMX19_04218 at 558.146 kb on + strand, within MPMX19_04218 at 558.146 kb on + strand, within MPMX19_04218 at 558.146 kb on + strand, within MPMX19_04218 at 558.146 kb on + strand, within MPMX19_04218 at 558.146 kb on + strand, within MPMX19_04218 at 558.146 kb on + strand, within MPMX19_04218 at 558.147 kb on - strand, within MPMX19_04218 at 558.147 kb on - strand, within MPMX19_04218 at 558.147 kb on - strand, within MPMX19_04218 at 558.147 kb on - strand, within MPMX19_04218 at 558.147 kb on - strand, within MPMX19_04218 at 558.147 kb on - strand, within MPMX19_04218 at 558.182 kb on + strand, within MPMX19_04218 at 558.182 kb on + strand, within MPMX19_04218 at 558.182 kb on + strand, within MPMX19_04218 at 558.182 kb on + strand, within MPMX19_04218 at 558.183 kb on - strand, within MPMX19_04218 at 558.183 kb on - strand, within MPMX19_04218 at 558.233 kb on + strand, within MPMX19_04218 at 558.233 kb on + strand, within MPMX19_04218 at 558.234 kb on - strand, within MPMX19_04218 at 558.234 kb on - strand, within MPMX19_04218 at 558.234 kb on - strand, within MPMX19_04218 at 558.240 kb on + strand, within MPMX19_04218 at 558.240 kb on + strand, within MPMX19_04218 at 558.240 kb on + strand, within MPMX19_04218 at 558.241 kb on - strand, within MPMX19_04218 at 558.241 kb on - strand, within MPMX19_04218
Per-strain Table
Position Strand Gene LocusTag Fraction NF remove 556,075 + -1.6 556,076 - +1.3 556,082 + +0.9 556,083 - -1.4 556,100 + -0.6 556,100 + -0.6 556,106 + +0.4 556,107 - -2.1 556,119 + -1.2 556,119 + +0.2 556,140 + -0.6 556,140 + -2.2 556,145 + +0.8 556,145 + -0.5 556,164 - -1.3 556,324 + MPMX19_04215 0.25 +0.1 556,324 + MPMX19_04215 0.25 +0.5 556,325 - MPMX19_04215 0.25 -1.6 556,325 - MPMX19_04215 0.25 +0.3 556,370 + MPMX19_04215 0.33 -0.8 556,370 + MPMX19_04215 0.33 -0.6 556,370 + MPMX19_04215 0.33 -0.2 556,370 + MPMX19_04215 0.33 +0.4 556,370 + MPMX19_04215 0.33 -0.2 556,370 + MPMX19_04215 0.33 +0.1 556,370 + MPMX19_04215 0.33 -0.8 556,370 + MPMX19_04215 0.33 +0.2 556,370 + MPMX19_04215 0.33 -0.0 556,371 - MPMX19_04215 0.33 +1.8 556,371 - MPMX19_04215 0.33 -0.6 556,371 - MPMX19_04215 0.33 -0.8 556,371 - MPMX19_04215 0.33 -0.9 556,371 - MPMX19_04215 0.33 +0.9 556,371 - MPMX19_04215 0.33 -1.7 556,371 - MPMX19_04215 0.33 -0.9 556,371 - MPMX19_04215 0.33 -1.7 556,371 - MPMX19_04215 0.33 -0.4 556,371 - MPMX19_04215 0.33 -0.6 556,466 + MPMX19_04215 0.49 -0.2 556,466 + MPMX19_04215 0.49 -1.2 556,466 + MPMX19_04215 0.49 +0.5 556,466 + MPMX19_04215 0.49 +0.6 556,466 + MPMX19_04215 0.49 -1.2 556,466 + MPMX19_04215 0.49 +0.2 556,466 + MPMX19_04215 0.49 -0.4 556,466 + MPMX19_04215 0.49 -1.7 556,466 + MPMX19_04215 0.49 +1.6 556,466 + MPMX19_04215 0.49 -0.9 556,466 + MPMX19_04215 0.49 -1.1 556,466 + MPMX19_04215 0.49 -0.4 556,467 - MPMX19_04215 0.50 +0.8 556,467 - MPMX19_04215 0.50 +0.1 556,467 - MPMX19_04215 0.50 -2.6 556,467 - MPMX19_04215 0.50 -0.8 556,467 - MPMX19_04215 0.50 -0.2 556,467 - MPMX19_04215 0.50 -2.5 556,467 - MPMX19_04215 0.50 -1.8 556,467 - MPMX19_04215 0.50 -0.8 556,467 - MPMX19_04215 0.50 -0.7 556,467 - MPMX19_04215 0.50 +0.8 556,577 + MPMX19_04215 0.69 +0.3 556,577 + MPMX19_04215 0.69 -1.2 556,577 + MPMX19_04215 0.69 -0.1 556,577 + MPMX19_04215 0.69 +0.2 556,577 + MPMX19_04215 0.69 +0.2 556,577 + MPMX19_04215 0.69 -1.7 556,577 + MPMX19_04215 0.69 +0.8 556,577 + MPMX19_04215 0.69 -0.2 556,577 + MPMX19_04215 0.69 +0.2 556,577 + MPMX19_04215 0.69 -1.7 556,577 + MPMX19_04215 0.69 -0.1 556,578 - MPMX19_04215 0.69 -0.7 556,578 - MPMX19_04215 0.69 -0.2 556,578 - MPMX19_04215 0.69 -0.1 556,578 - MPMX19_04215 0.69 -0.8 556,578 - MPMX19_04215 0.69 -1.9 556,578 - MPMX19_04215 0.69 -0.5 556,578 - MPMX19_04215 0.69 +0.6 556,578 - MPMX19_04215 0.69 -0.0 556,578 - MPMX19_04215 0.69 +0.3 556,578 - MPMX19_04215 0.69 +2.3 556,578 - MPMX19_04215 0.69 -0.1 556,578 - MPMX19_04215 0.69 -0.6 556,578 - MPMX19_04215 0.69 +0.9 556,578 - MPMX19_04215 0.69 -1.1 556,578 - MPMX19_04215 0.69 +1.0 556,578 - MPMX19_04215 0.69 -0.8 556,578 - MPMX19_04215 0.69 +0.1 556,578 - MPMX19_04215 0.69 -0.9 556,578 - MPMX19_04215 0.69 -1.2 556,578 - MPMX19_04215 0.69 -0.2 557,136 + MPMX19_04217 0.16 +0.6 557,136 + MPMX19_04217 0.16 -1.1 557,137 - MPMX19_04217 0.16 -0.6 557,137 - MPMX19_04217 0.16 +0.3 557,137 - MPMX19_04217 0.16 -0.1 557,164 + MPMX19_04217 0.23 +0.8 557,164 + MPMX19_04217 0.23 +1.2 557,164 + MPMX19_04217 0.23 -0.7 557,165 - MPMX19_04217 0.23 -0.2 557,165 - MPMX19_04217 0.23 +0.0 557,165 - MPMX19_04217 0.23 -0.2 557,165 - MPMX19_04217 0.23 +0.4 557,165 - MPMX19_04217 0.23 +0.2 557,165 - MPMX19_04217 0.23 +0.6 557,165 - MPMX19_04217 0.23 -0.5 557,238 + MPMX19_04217 0.40 +0.8 557,238 + MPMX19_04217 0.40 -0.5 557,238 + MPMX19_04217 0.40 +0.2 557,238 + MPMX19_04217 0.40 +0.3 557,238 + MPMX19_04217 0.40 -0.2 557,238 + MPMX19_04217 0.40 -0.7 557,238 + MPMX19_04217 0.40 -1.2 557,238 + MPMX19_04217 0.40 -1.2 557,238 + MPMX19_04217 0.40 -0.6 557,238 + MPMX19_04217 0.40 -0.4 557,238 + MPMX19_04217 0.40 +0.9 557,238 + MPMX19_04217 0.40 +1.0 557,238 + MPMX19_04217 0.40 +0.8 557,239 - MPMX19_04217 0.40 +0.8 557,239 - MPMX19_04217 0.40 +1.8 557,239 - MPMX19_04217 0.40 -1.2 557,239 - MPMX19_04217 0.40 -1.5 557,250 + MPMX19_04217 0.43 -1.6 557,250 + MPMX19_04217 0.43 -0.6 557,250 + MPMX19_04217 0.43 +1.3 557,250 + MPMX19_04217 0.43 -1.8 557,250 + MPMX19_04217 0.43 -1.1 557,250 + MPMX19_04217 0.43 -0.9 557,251 - MPMX19_04217 0.43 +0.3 557,251 - MPMX19_04217 0.43 -1.6 557,251 - MPMX19_04217 0.43 -1.4 557,251 - MPMX19_04217 0.43 +1.2 557,325 + MPMX19_04217 0.60 +0.2 557,325 + MPMX19_04217 0.60 +1.2 557,325 + MPMX19_04217 0.60 +0.8 557,325 + MPMX19_04217 0.60 +1.2 557,325 + MPMX19_04217 0.60 +0.4 557,326 - MPMX19_04217 0.60 +0.8 557,326 - MPMX19_04217 0.60 -0.4 557,326 - MPMX19_04217 0.60 +0.4 557,326 - MPMX19_04217 0.60 +0.2 557,458 + -0.6 557,458 + -0.6 557,459 - -2.8 557,497 + -0.4 557,497 + +1.8 557,498 - +0.8 557,510 + +0.8 557,510 + -1.8 557,510 + -1.5 557,510 + -0.6 557,510 + -0.1 557,510 + +0.8 557,510 + -0.2 557,510 + -1.2 557,511 - -0.4 557,511 - -0.1 557,511 - +1.5 557,511 - -1.7 557,511 - +0.3 557,511 - -0.7 557,511 - -0.4 557,553 + -2.6 557,579 + -0.1 557,579 + +0.3 557,579 + -0.6 557,579 + -0.7 557,579 + -0.6 557,579 + -1.9 557,580 - -0.8 557,580 - +0.3 557,580 - -1.6 558,059 + MPMX19_04218 0.41 +0.1 558,059 + MPMX19_04218 0.41 -1.1 558,059 + MPMX19_04218 0.41 -0.6 558,059 + MPMX19_04218 0.41 -0.6 558,059 + MPMX19_04218 0.41 -0.7 558,060 - MPMX19_04218 0.41 -0.7 558,060 - MPMX19_04218 0.41 -2.3 558,060 - MPMX19_04218 0.41 -1.2 558,146 + MPMX19_04218 0.52 -0.4 558,146 + MPMX19_04218 0.52 +0.2 558,146 + MPMX19_04218 0.52 -0.4 558,146 + MPMX19_04218 0.52 -0.2 558,146 + MPMX19_04218 0.52 -1.2 558,146 + MPMX19_04218 0.52 +0.5 558,146 + MPMX19_04218 0.52 +0.2 558,146 + MPMX19_04218 0.52 -0.5 558,147 - MPMX19_04218 0.52 +0.4 558,147 - MPMX19_04218 0.52 -0.8 558,147 - MPMX19_04218 0.52 -2.1 558,147 - MPMX19_04218 0.52 -1.2 558,147 - MPMX19_04218 0.52 -1.4 558,147 - MPMX19_04218 0.52 +0.2 558,182 + MPMX19_04218 0.56 -1.1 558,182 + MPMX19_04218 0.56 -2.1 558,182 + MPMX19_04218 0.56 -0.2 558,182 + MPMX19_04218 0.56 +0.8 558,183 - MPMX19_04218 0.56 -0.8 558,183 - MPMX19_04218 0.56 -1.9 558,233 + MPMX19_04218 0.62 -0.1 558,233 + MPMX19_04218 0.62 -1.2 558,234 - MPMX19_04218 0.63 +0.1 558,234 - MPMX19_04218 0.63 +0.8 558,234 - MPMX19_04218 0.63 +0.3 558,240 + MPMX19_04218 0.63 -1.5 558,240 + MPMX19_04218 0.63 -0.1 558,240 + MPMX19_04218 0.63 -1.8 558,241 - MPMX19_04218 0.63 -0.4 558,241 - MPMX19_04218 0.63 +0.0
Or see this region's nucleotide sequence