Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_04144

Experiment: NF

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_04143 and MPMX19_04144 are separated by 320 nucleotidesMPMX19_04144 and MPMX19_04145 are separated by 116 nucleotidesMPMX19_04145 and MPMX19_04146 are separated by 71 nucleotides MPMX19_04143: MPMX19_04143 - hypothetical protein, at 454,015 to 455,598 _04143 MPMX19_04144: MPMX19_04144 - putative manganese efflux pump MntP, at 455,919 to 456,521 _04144 MPMX19_04145: MPMX19_04145 - hypothetical protein, at 456,638 to 457,330 _04145 MPMX19_04146: MPMX19_04146 - L-lactate dehydrogenase, at 457,402 to 458,616 _04146 Position (kb) 455 456 457Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 455.053 kb on + strand, within MPMX19_04143at 455.254 kb on + strand, within MPMX19_04143at 455.254 kb on + strand, within MPMX19_04143at 455.254 kb on + strand, within MPMX19_04143at 455.254 kb on + strand, within MPMX19_04143at 455.254 kb on + strand, within MPMX19_04143at 455.254 kb on + strand, within MPMX19_04143at 455.254 kb on + strand, within MPMX19_04143at 455.254 kb on + strand, within MPMX19_04143at 455.254 kb on + strand, within MPMX19_04143at 455.254 kb on + strand, within MPMX19_04143at 455.254 kb on + strand, within MPMX19_04143at 455.254 kb on + strand, within MPMX19_04143at 455.254 kb on + strand, within MPMX19_04143at 455.254 kb on + strand, within MPMX19_04143at 455.254 kb on + strand, within MPMX19_04143at 455.255 kb on - strand, within MPMX19_04143at 455.255 kb on - strand, within MPMX19_04143at 455.255 kb on - strand, within MPMX19_04143at 455.255 kb on - strand, within MPMX19_04143at 455.255 kb on - strand, within MPMX19_04143at 455.255 kb on - strand, within MPMX19_04143at 455.255 kb on - strand, within MPMX19_04143at 455.255 kb on - strand, within MPMX19_04143at 455.255 kb on - strand, within MPMX19_04143at 455.255 kb on - strand, within MPMX19_04143at 455.255 kb on - strand, within MPMX19_04143at 455.255 kb on - strand, within MPMX19_04143at 455.255 kb on - strand, within MPMX19_04143at 455.255 kb on - strand, within MPMX19_04143at 455.296 kb on + strand, within MPMX19_04143at 455.296 kb on + strand, within MPMX19_04143at 455.296 kb on + strand, within MPMX19_04143at 455.296 kb on + strand, within MPMX19_04143at 455.297 kb on - strand, within MPMX19_04143at 455.297 kb on - strand, within MPMX19_04143at 455.297 kb on - strand, within MPMX19_04143at 455.297 kb on - strand, within MPMX19_04143at 455.297 kb on - strand, within MPMX19_04143at 455.297 kb on - strand, within MPMX19_04143at 455.387 kb on + strand, within MPMX19_04143at 455.387 kb on + strand, within MPMX19_04143at 455.387 kb on + strand, within MPMX19_04143at 455.387 kb on + strand, within MPMX19_04143at 455.387 kb on + strand, within MPMX19_04143at 455.387 kb on + strand, within MPMX19_04143at 455.387 kb on + strand, within MPMX19_04143at 455.388 kb on - strand, within MPMX19_04143at 455.388 kb on - strand, within MPMX19_04143at 455.425 kb on + strand, within MPMX19_04143at 455.557 kb on + strandat 455.558 kb on - strandat 455.558 kb on - strandat 455.558 kb on - strandat 455.558 kb on - strandat 455.627 kb on + strandat 455.637 kb on + strandat 455.637 kb on + strandat 455.639 kb on + strandat 455.640 kb on - strandat 455.640 kb on - strandat 455.640 kb on - strandat 455.640 kb on - strandat 455.666 kb on + strandat 455.667 kb on - strandat 455.696 kb on + strandat 455.697 kb on - strandat 455.764 kb on + strandat 455.764 kb on + strandat 455.764 kb on + strandat 455.765 kb on - strandat 455.766 kb on + strandat 455.766 kb on + strandat 455.766 kb on + strandat 455.766 kb on + strandat 455.766 kb on + strandat 455.767 kb on - strandat 455.767 kb on - strandat 455.767 kb on - strandat 455.788 kb on + strandat 455.789 kb on - strandat 455.873 kb on - strandat 455.975 kb on - strandat 456.138 kb on + strand, within MPMX19_04144at 456.138 kb on + strand, within MPMX19_04144at 456.138 kb on + strand, within MPMX19_04144at 456.138 kb on + strand, within MPMX19_04144at 456.138 kb on + strand, within MPMX19_04144at 456.138 kb on + strand, within MPMX19_04144at 456.138 kb on + strand, within MPMX19_04144at 456.138 kb on + strand, within MPMX19_04144at 456.138 kb on + strand, within MPMX19_04144at 456.138 kb on + strand, within MPMX19_04144at 456.138 kb on + strand, within MPMX19_04144at 456.138 kb on + strand, within MPMX19_04144at 456.138 kb on + strand, within MPMX19_04144at 456.138 kb on + strand, within MPMX19_04144at 456.138 kb on + strand, within MPMX19_04144at 456.138 kb on + strand, within MPMX19_04144at 456.138 kb on + strand, within MPMX19_04144at 456.138 kb on + strand, within MPMX19_04144at 456.138 kb on + strand, within MPMX19_04144at 456.138 kb on + strand, within MPMX19_04144at 456.138 kb on + strand, within MPMX19_04144at 456.139 kb on - strand, within MPMX19_04144at 456.139 kb on - strand, within MPMX19_04144at 456.139 kb on - strand, within MPMX19_04144at 456.139 kb on - strand, within MPMX19_04144at 456.139 kb on - strand, within MPMX19_04144at 456.139 kb on - strand, within MPMX19_04144at 456.139 kb on - strand, within MPMX19_04144at 456.139 kb on - strand, within MPMX19_04144at 456.139 kb on - strand, within MPMX19_04144at 456.139 kb on - strand, within MPMX19_04144at 456.139 kb on - strand, within MPMX19_04144at 456.139 kb on - strand, within MPMX19_04144at 456.139 kb on - strand, within MPMX19_04144at 456.596 kb on + strandat 456.599 kb on - strandat 456.599 kb on - strandat 456.599 kb on - strandat 456.661 kb on + strandat 456.661 kb on + strandat 456.661 kb on + strandat 456.662 kb on - strandat 457.259 kb on + strand, within MPMX19_04145at 457.259 kb on + strand, within MPMX19_04145at 457.259 kb on + strand, within MPMX19_04145at 457.259 kb on + strand, within MPMX19_04145at 457.259 kb on + strand, within MPMX19_04145at 457.269 kb on - strandat 457.328 kb on + strandat 457.328 kb on + strandat 457.328 kb on + strandat 457.329 kb on - strandat 457.329 kb on - strandat 457.329 kb on - strandat 457.329 kb on - strandat 457.329 kb on - strandat 457.329 kb on - strandat 457.416 kb on + strandat 457.417 kb on - strandat 457.417 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NF
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455,053 + MPMX19_04143 0.66 -0.4
455,254 + MPMX19_04143 0.78 -0.1
455,254 + MPMX19_04143 0.78 -1.2
455,254 + MPMX19_04143 0.78 -2.6
455,254 + MPMX19_04143 0.78 -3.0
455,254 + MPMX19_04143 0.78 -1.8
455,254 + MPMX19_04143 0.78 +0.1
455,254 + MPMX19_04143 0.78 +0.6
455,254 + MPMX19_04143 0.78 -0.4
455,254 + MPMX19_04143 0.78 +0.5
455,254 + MPMX19_04143 0.78 -1.6
455,254 + MPMX19_04143 0.78 -1.6
455,254 + MPMX19_04143 0.78 +0.6
455,254 + MPMX19_04143 0.78 -0.0
455,254 + MPMX19_04143 0.78 -2.4
455,254 + MPMX19_04143 0.78 -1.3
455,255 - MPMX19_04143 0.78 +1.2
455,255 - MPMX19_04143 0.78 +0.1
455,255 - MPMX19_04143 0.78 +2.2
455,255 - MPMX19_04143 0.78 +0.3
455,255 - MPMX19_04143 0.78 -0.2
455,255 - MPMX19_04143 0.78 +0.4
455,255 - MPMX19_04143 0.78 +0.7
455,255 - MPMX19_04143 0.78 -0.7
455,255 - MPMX19_04143 0.78 -1.8
455,255 - MPMX19_04143 0.78 -1.6
455,255 - MPMX19_04143 0.78 -0.5
455,255 - MPMX19_04143 0.78 +0.3
455,255 - MPMX19_04143 0.78 -0.8
455,255 - MPMX19_04143 0.78 +0.2
455,296 + MPMX19_04143 0.81 -0.3
455,296 + MPMX19_04143 0.81 +0.7
455,296 + MPMX19_04143 0.81 -0.8
455,296 + MPMX19_04143 0.81 +0.4
455,297 - MPMX19_04143 0.81 -1.3
455,297 - MPMX19_04143 0.81 +0.9
455,297 - MPMX19_04143 0.81 -0.9
455,297 - MPMX19_04143 0.81 -0.1
455,297 - MPMX19_04143 0.81 -0.3
455,297 - MPMX19_04143 0.81 -0.7
455,387 + MPMX19_04143 0.87 -0.7
455,387 + MPMX19_04143 0.87 +0.1
455,387 + MPMX19_04143 0.87 -0.8
455,387 + MPMX19_04143 0.87 -0.3
455,387 + MPMX19_04143 0.87 -1.5
455,387 + MPMX19_04143 0.87 -0.8
455,387 + MPMX19_04143 0.87 -0.6
455,388 - MPMX19_04143 0.87 -1.4
455,388 - MPMX19_04143 0.87 -0.9
455,425 + MPMX19_04143 0.89 -0.7
455,557 + +0.5
455,558 - -0.4
455,558 - -0.8
455,558 - +0.7
455,558 - -2.1
455,627 + -0.4
455,637 + +0.6
455,637 + -0.3
455,639 + -2.3
455,640 - +0.8
455,640 - -2.3
455,640 - -1.3
455,640 - +2.3
455,666 + +0.7
455,667 - -1.1
455,696 + -0.8
455,697 - +0.2
455,764 + +0.4
455,764 + +1.5
455,764 + -0.3
455,765 - -1.7
455,766 + +0.7
455,766 + +0.1
455,766 + +1.7
455,766 + +0.0
455,766 + +0.7
455,767 - -0.1
455,767 - +0.7
455,767 - -1.3
455,788 + +0.6
455,789 - -0.6
455,873 - -0.4
455,975 - +0.7
456,138 + MPMX19_04144 0.36 -0.7
456,138 + MPMX19_04144 0.36 -0.7
456,138 + MPMX19_04144 0.36 +0.7
456,138 + MPMX19_04144 0.36 -0.4
456,138 + MPMX19_04144 0.36 -0.7
456,138 + MPMX19_04144 0.36 +1.4
456,138 + MPMX19_04144 0.36 -1.3
456,138 + MPMX19_04144 0.36 +0.9
456,138 + MPMX19_04144 0.36 -0.8
456,138 + MPMX19_04144 0.36 -1.0
456,138 + MPMX19_04144 0.36 +0.3
456,138 + MPMX19_04144 0.36 +0.6
456,138 + MPMX19_04144 0.36 +0.2
456,138 + MPMX19_04144 0.36 -1.2
456,138 + MPMX19_04144 0.36 -0.7
456,138 + MPMX19_04144 0.36 +0.6
456,138 + MPMX19_04144 0.36 +0.4
456,138 + MPMX19_04144 0.36 +1.1
456,138 + MPMX19_04144 0.36 +0.1
456,138 + MPMX19_04144 0.36 -1.1
456,138 + MPMX19_04144 0.36 +0.9
456,139 - MPMX19_04144 0.36 +1.4
456,139 - MPMX19_04144 0.36 +1.0
456,139 - MPMX19_04144 0.36 +1.7
456,139 - MPMX19_04144 0.36 +0.5
456,139 - MPMX19_04144 0.36 +0.7
456,139 - MPMX19_04144 0.36 -0.3
456,139 - MPMX19_04144 0.36 -1.1
456,139 - MPMX19_04144 0.36 -1.1
456,139 - MPMX19_04144 0.36 -1.0
456,139 - MPMX19_04144 0.36 -0.3
456,139 - MPMX19_04144 0.36 +1.3
456,139 - MPMX19_04144 0.36 -1.6
456,139 - MPMX19_04144 0.36 -0.1
456,596 + +0.0
456,599 - +0.2
456,599 - -0.6
456,599 - -1.1
456,661 + +0.6
456,661 + +0.7
456,661 + -1.7
456,662 - -1.3
457,259 + MPMX19_04145 0.90 -0.6
457,259 + MPMX19_04145 0.90 -0.9
457,259 + MPMX19_04145 0.90 +1.0
457,259 + MPMX19_04145 0.90 -1.1
457,259 + MPMX19_04145 0.90 -2.3
457,269 - -0.6
457,328 + +0.2
457,328 + -1.4
457,328 + -1.4
457,329 - -1.1
457,329 - +1.3
457,329 - -0.3
457,329 - -2.0
457,329 - -1.1
457,329 - -0.3
457,416 + +0.2
457,417 - -1.4
457,417 - +0.3

Or see this region's nucleotide sequence