Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_04139

Experiment: NF

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_04137 and MPMX19_04138 are separated by 118 nucleotidesMPMX19_04138 and MPMX19_04139 are separated by 95 nucleotidesMPMX19_04139 and MPMX19_04140 are separated by 35 nucleotidesMPMX19_04140 and MPMX19_04141 are separated by 17 nucleotides MPMX19_04137: MPMX19_04137 - HTH-type transcriptional regulator PgrR, at 449,210 to 450,094 _04137 MPMX19_04138: MPMX19_04138 - hypothetical protein, at 450,213 to 450,674 _04138 MPMX19_04139: MPMX19_04139 - 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase, at 450,770 to 451,420 _04139 MPMX19_04140: MPMX19_04140 - 3-phenylpropionate-dihydrodiol/cinnamic acid-dihydrodiol dehydrogenase, at 451,456 to 452,289 _04140 MPMX19_04141: MPMX19_04141 - 3',5'-cyclic adenosine monophosphate phosphodiesterase CpdA, at 452,307 to 453,026 _04141 Position (kb) 450 451 452Strain fitness (log2 ratio) -2 -1 0 1 2at 449.812 kb on + strand, within MPMX19_04137at 450.095 kb on + strandat 450.321 kb on + strand, within MPMX19_04138at 450.321 kb on + strand, within MPMX19_04138at 450.322 kb on - strand, within MPMX19_04138at 450.322 kb on - strand, within MPMX19_04138at 450.322 kb on - strand, within MPMX19_04138at 450.322 kb on - strand, within MPMX19_04138at 450.322 kb on - strand, within MPMX19_04138at 450.322 kb on - strand, within MPMX19_04138at 450.322 kb on - strand, within MPMX19_04138at 450.322 kb on - strand, within MPMX19_04138at 450.322 kb on - strand, within MPMX19_04138at 450.322 kb on - strand, within MPMX19_04138at 450.363 kb on + strand, within MPMX19_04138at 450.363 kb on + strand, within MPMX19_04138at 450.363 kb on + strand, within MPMX19_04138at 450.363 kb on + strand, within MPMX19_04138at 450.363 kb on + strand, within MPMX19_04138at 450.364 kb on - strand, within MPMX19_04138at 450.384 kb on + strand, within MPMX19_04138at 450.384 kb on + strand, within MPMX19_04138at 450.384 kb on + strand, within MPMX19_04138at 450.384 kb on + strand, within MPMX19_04138at 450.384 kb on + strand, within MPMX19_04138at 450.384 kb on + strand, within MPMX19_04138at 450.384 kb on + strand, within MPMX19_04138at 450.384 kb on + strand, within MPMX19_04138at 450.384 kb on + strand, within MPMX19_04138at 450.385 kb on - strand, within MPMX19_04138at 450.414 kb on + strand, within MPMX19_04138at 450.414 kb on + strand, within MPMX19_04138at 450.415 kb on - strand, within MPMX19_04138at 450.415 kb on - strand, within MPMX19_04138at 450.415 kb on - strand, within MPMX19_04138at 450.415 kb on - strand, within MPMX19_04138at 450.465 kb on + strand, within MPMX19_04138at 450.493 kb on - strand, within MPMX19_04138at 450.502 kb on - strand, within MPMX19_04138at 451.208 kb on + strand, within MPMX19_04139at 451.208 kb on + strand, within MPMX19_04139at 451.208 kb on + strand, within MPMX19_04139at 451.208 kb on + strand, within MPMX19_04139at 451.208 kb on + strand, within MPMX19_04139at 451.208 kb on + strand, within MPMX19_04139at 451.208 kb on + strand, within MPMX19_04139at 451.208 kb on + strand, within MPMX19_04139at 451.208 kb on + strand, within MPMX19_04139at 451.208 kb on + strand, within MPMX19_04139at 451.209 kb on - strand, within MPMX19_04139at 451.209 kb on - strand, within MPMX19_04139at 451.209 kb on - strand, within MPMX19_04139at 451.402 kb on + strandat 451.402 kb on + strandat 451.402 kb on + strandat 451.402 kb on + strandat 451.402 kb on + strandat 451.403 kb on - strandat 451.403 kb on - strandat 451.403 kb on - strandat 451.403 kb on - strandat 451.403 kb on - strandat 451.403 kb on - strandat 451.406 kb on + strandat 451.407 kb on - strandat 451.437 kb on + strandat 451.759 kb on + strand, within MPMX19_04140at 451.759 kb on + strand, within MPMX19_04140at 451.759 kb on + strand, within MPMX19_04140at 451.760 kb on - strand, within MPMX19_04140at 451.760 kb on - strand, within MPMX19_04140at 451.760 kb on - strand, within MPMX19_04140at 451.760 kb on - strand, within MPMX19_04140at 451.812 kb on + strand, within MPMX19_04140at 451.812 kb on + strand, within MPMX19_04140at 451.812 kb on + strand, within MPMX19_04140at 451.813 kb on - strand, within MPMX19_04140at 451.813 kb on - strand, within MPMX19_04140at 451.813 kb on - strand, within MPMX19_04140at 451.891 kb on + strand, within MPMX19_04140at 451.891 kb on + strand, within MPMX19_04140at 451.891 kb on + strand, within MPMX19_04140at 451.892 kb on - strand, within MPMX19_04140at 451.892 kb on - strand, within MPMX19_04140at 451.892 kb on - strand, within MPMX19_04140at 451.892 kb on - strand, within MPMX19_04140at 451.892 kb on - strand, within MPMX19_04140at 451.892 kb on - strand, within MPMX19_04140at 451.892 kb on - strand, within MPMX19_04140at 451.987 kb on + strand, within MPMX19_04140at 451.988 kb on - strand, within MPMX19_04140at 452.050 kb on + strand, within MPMX19_04140at 452.050 kb on + strand, within MPMX19_04140at 452.051 kb on - strand, within MPMX19_04140at 452.051 kb on - strand, within MPMX19_04140at 452.051 kb on - strand, within MPMX19_04140at 452.051 kb on - strand, within MPMX19_04140at 452.326 kb on + strandat 452.326 kb on + strandat 452.326 kb on + strandat 452.327 kb on - strandat 452.327 kb on - strandat 452.328 kb on - strandat 452.368 kb on + strandat 452.368 kb on + strandat 452.368 kb on + strandat 452.368 kb on + strandat 452.368 kb on + strandat 452.368 kb on + strandat 452.368 kb on + strandat 452.369 kb on - strandat 452.369 kb on - strandat 452.369 kb on - strandat 452.369 kb on - strandat 452.369 kb on - strandat 452.369 kb on - strandat 452.401 kb on + strand, within MPMX19_04141at 452.401 kb on + strand, within MPMX19_04141at 452.401 kb on + strand, within MPMX19_04141at 452.401 kb on + strand, within MPMX19_04141at 452.401 kb on + strand, within MPMX19_04141at 452.401 kb on + strand, within MPMX19_04141at 452.401 kb on + strand, within MPMX19_04141at 452.401 kb on + strand, within MPMX19_04141at 452.401 kb on + strand, within MPMX19_04141at 452.401 kb on + strand, within MPMX19_04141at 452.401 kb on + strand, within MPMX19_04141at 452.401 kb on + strand, within MPMX19_04141at 452.401 kb on + strand, within MPMX19_04141at 452.401 kb on + strand, within MPMX19_04141at 452.401 kb on + strand, within MPMX19_04141at 452.401 kb on + strand, within MPMX19_04141at 452.401 kb on + strand, within MPMX19_04141at 452.402 kb on - strand, within MPMX19_04141at 452.402 kb on - strand, within MPMX19_04141at 452.402 kb on - strand, within MPMX19_04141at 452.402 kb on - strand, within MPMX19_04141at 452.402 kb on - strand, within MPMX19_04141at 452.402 kb on - strand, within MPMX19_04141at 452.402 kb on - strand, within MPMX19_04141at 452.402 kb on - strand, within MPMX19_04141at 452.402 kb on - strand, within MPMX19_04141at 452.402 kb on - strand, within MPMX19_04141at 452.402 kb on - strand, within MPMX19_04141at 452.402 kb on - strand, within MPMX19_04141at 452.402 kb on - strand, within MPMX19_04141at 452.402 kb on - strand, within MPMX19_04141at 452.402 kb on - strand, within MPMX19_04141

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Per-strain Table

Position Strand Gene LocusTag Fraction NF
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449,812 + MPMX19_04137 0.68 +2.7
450,095 + -1.7
450,321 + MPMX19_04138 0.23 -0.8
450,321 + MPMX19_04138 0.23 +0.2
450,322 - MPMX19_04138 0.24 -0.3
450,322 - MPMX19_04138 0.24 +0.2
450,322 - MPMX19_04138 0.24 +0.2
450,322 - MPMX19_04138 0.24 -0.7
450,322 - MPMX19_04138 0.24 -1.2
450,322 - MPMX19_04138 0.24 +0.8
450,322 - MPMX19_04138 0.24 +0.2
450,322 - MPMX19_04138 0.24 -1.1
450,322 - MPMX19_04138 0.24 -0.3
450,322 - MPMX19_04138 0.24 -1.4
450,363 + MPMX19_04138 0.32 -0.2
450,363 + MPMX19_04138 0.32 +0.3
450,363 + MPMX19_04138 0.32 -0.4
450,363 + MPMX19_04138 0.32 -0.7
450,363 + MPMX19_04138 0.32 +0.8
450,364 - MPMX19_04138 0.33 -0.8
450,384 + MPMX19_04138 0.37 +0.1
450,384 + MPMX19_04138 0.37 +0.2
450,384 + MPMX19_04138 0.37 -1.0
450,384 + MPMX19_04138 0.37 -0.9
450,384 + MPMX19_04138 0.37 -0.8
450,384 + MPMX19_04138 0.37 -0.7
450,384 + MPMX19_04138 0.37 -0.4
450,384 + MPMX19_04138 0.37 -0.3
450,384 + MPMX19_04138 0.37 +0.7
450,385 - MPMX19_04138 0.37 -0.6
450,414 + MPMX19_04138 0.44 -0.3
450,414 + MPMX19_04138 0.44 -0.1
450,415 - MPMX19_04138 0.44 -1.2
450,415 - MPMX19_04138 0.44 -2.1
450,415 - MPMX19_04138 0.44 +0.3
450,415 - MPMX19_04138 0.44 +1.3
450,465 + MPMX19_04138 0.55 -1.3
450,493 - MPMX19_04138 0.61 +0.2
450,502 - MPMX19_04138 0.63 -0.3
451,208 + MPMX19_04139 0.67 -1.0
451,208 + MPMX19_04139 0.67 +1.4
451,208 + MPMX19_04139 0.67 -0.3
451,208 + MPMX19_04139 0.67 +1.0
451,208 + MPMX19_04139 0.67 -0.4
451,208 + MPMX19_04139 0.67 +0.6
451,208 + MPMX19_04139 0.67 +0.7
451,208 + MPMX19_04139 0.67 -0.2
451,208 + MPMX19_04139 0.67 -1.3
451,208 + MPMX19_04139 0.67 +1.2
451,209 - MPMX19_04139 0.67 +0.3
451,209 - MPMX19_04139 0.67 +0.1
451,209 - MPMX19_04139 0.67 -1.0
451,402 + -2.3
451,402 + -0.7
451,402 + -1.7
451,402 + -0.8
451,402 + -1.5
451,403 - -1.7
451,403 - +0.4
451,403 - +0.2
451,403 - +1.2
451,403 - +0.4
451,403 - -2.3
451,406 + +0.7
451,407 - -0.1
451,437 + -0.4
451,759 + MPMX19_04140 0.36 +0.8
451,759 + MPMX19_04140 0.36 -1.4
451,759 + MPMX19_04140 0.36 -0.6
451,760 - MPMX19_04140 0.36 +0.2
451,760 - MPMX19_04140 0.36 +0.2
451,760 - MPMX19_04140 0.36 -0.0
451,760 - MPMX19_04140 0.36 +0.7
451,812 + MPMX19_04140 0.43 -1.4
451,812 + MPMX19_04140 0.43 -0.4
451,812 + MPMX19_04140 0.43 -0.2
451,813 - MPMX19_04140 0.43 -0.8
451,813 - MPMX19_04140 0.43 +1.5
451,813 - MPMX19_04140 0.43 -0.7
451,891 + MPMX19_04140 0.52 +0.4
451,891 + MPMX19_04140 0.52 -1.1
451,891 + MPMX19_04140 0.52 -0.5
451,892 - MPMX19_04140 0.52 -0.8
451,892 - MPMX19_04140 0.52 +0.0
451,892 - MPMX19_04140 0.52 -0.7
451,892 - MPMX19_04140 0.52 -0.5
451,892 - MPMX19_04140 0.52 +0.4
451,892 - MPMX19_04140 0.52 -0.1
451,892 - MPMX19_04140 0.52 -1.1
451,987 + MPMX19_04140 0.64 -1.8
451,988 - MPMX19_04140 0.64 -0.7
452,050 + MPMX19_04140 0.71 +1.0
452,050 + MPMX19_04140 0.71 +0.0
452,051 - MPMX19_04140 0.71 +0.4
452,051 - MPMX19_04140 0.71 -1.7
452,051 - MPMX19_04140 0.71 -0.1
452,051 - MPMX19_04140 0.71 +0.2
452,326 + -0.1
452,326 + -0.2
452,326 + -1.4
452,327 - -2.3
452,327 - +0.0
452,328 - +0.3
452,368 + -0.4
452,368 + -1.3
452,368 + +0.4
452,368 + -1.3
452,368 + -0.6
452,368 + +0.2
452,368 + +0.7
452,369 - -2.1
452,369 - -1.3
452,369 - -1.8
452,369 - -2.2
452,369 - +0.2
452,369 - -0.4
452,401 + MPMX19_04141 0.13 -0.2
452,401 + MPMX19_04141 0.13 -0.7
452,401 + MPMX19_04141 0.13 -0.3
452,401 + MPMX19_04141 0.13 -1.1
452,401 + MPMX19_04141 0.13 +0.6
452,401 + MPMX19_04141 0.13 -1.4
452,401 + MPMX19_04141 0.13 +0.7
452,401 + MPMX19_04141 0.13 -0.8
452,401 + MPMX19_04141 0.13 -0.1
452,401 + MPMX19_04141 0.13 +0.6
452,401 + MPMX19_04141 0.13 -0.1
452,401 + MPMX19_04141 0.13 -0.8
452,401 + MPMX19_04141 0.13 -1.2
452,401 + MPMX19_04141 0.13 +0.3
452,401 + MPMX19_04141 0.13 -0.3
452,401 + MPMX19_04141 0.13 -0.4
452,401 + MPMX19_04141 0.13 -1.3
452,402 - MPMX19_04141 0.13 -2.1
452,402 - MPMX19_04141 0.13 -0.4
452,402 - MPMX19_04141 0.13 -0.7
452,402 - MPMX19_04141 0.13 -1.5
452,402 - MPMX19_04141 0.13 -0.7
452,402 - MPMX19_04141 0.13 +0.2
452,402 - MPMX19_04141 0.13 +0.2
452,402 - MPMX19_04141 0.13 -1.7
452,402 - MPMX19_04141 0.13 -1.2
452,402 - MPMX19_04141 0.13 -0.7
452,402 - MPMX19_04141 0.13 +0.9
452,402 - MPMX19_04141 0.13 +0.5
452,402 - MPMX19_04141 0.13 -0.1
452,402 - MPMX19_04141 0.13 +0.4
452,402 - MPMX19_04141 0.13 -1.6

Or see this region's nucleotide sequence