Experiment: NF
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_04118 and MPMX19_04119 are separated by 27 nucleotides MPMX19_04119 and MPMX19_04120 overlap by 14 nucleotides MPMX19_04120 and MPMX19_04121 are separated by 19 nucleotides
MPMX19_04118: MPMX19_04118 - Sensor histidine kinase RcsC, at 427,070 to 428,731
_04118
MPMX19_04119: MPMX19_04119 - hypothetical protein, at 428,759 to 429,166
_04119
MPMX19_04120: MPMX19_04120 - hypothetical protein, at 429,153 to 429,542
_04120
MPMX19_04121: MPMX19_04121 - Putative aminopeptidase YsdC, at 429,562 to 430,620
_04121
Position (kb)
428
429
430 Strain fitness (log2 ratio)
-2
-1
0
1 at 427.994 kb on + strand, within MPMX19_04118 at 427.995 kb on - strand, within MPMX19_04118 at 427.995 kb on - strand, within MPMX19_04118 at 427.995 kb on - strand, within MPMX19_04118 at 428.865 kb on + strand, within MPMX19_04119 at 428.866 kb on - strand, within MPMX19_04119 at 428.866 kb on - strand, within MPMX19_04119 at 428.925 kb on + strand, within MPMX19_04119 at 428.926 kb on - strand, within MPMX19_04119 at 428.926 kb on - strand, within MPMX19_04119 at 429.039 kb on + strand, within MPMX19_04119 at 429.039 kb on + strand, within MPMX19_04119 at 429.039 kb on + strand, within MPMX19_04119 at 429.040 kb on - strand, within MPMX19_04119 at 429.040 kb on - strand, within MPMX19_04119 at 429.040 kb on - strand, within MPMX19_04119 at 429.166 kb on + strand at 429.274 kb on + strand, within MPMX19_04120 at 429.274 kb on + strand, within MPMX19_04120 at 429.292 kb on + strand, within MPMX19_04120 at 429.292 kb on + strand, within MPMX19_04120 at 429.326 kb on + strand, within MPMX19_04120 at 429.326 kb on + strand, within MPMX19_04120 at 429.355 kb on + strand, within MPMX19_04120 at 429.355 kb on + strand, within MPMX19_04120 at 429.355 kb on + strand, within MPMX19_04120 at 429.355 kb on + strand, within MPMX19_04120 at 429.355 kb on + strand, within MPMX19_04120 at 429.500 kb on + strand, within MPMX19_04120 at 429.500 kb on + strand, within MPMX19_04120 at 429.528 kb on + strand at 429.528 kb on + strand at 429.528 kb on + strand at 429.529 kb on - strand at 429.529 kb on - strand at 429.587 kb on + strand at 429.587 kb on + strand at 429.587 kb on + strand at 429.588 kb on - strand at 429.588 kb on - strand at 429.588 kb on - strand at 429.588 kb on - strand at 429.588 kb on - strand at 429.588 kb on - strand at 429.599 kb on - strand at 429.641 kb on + strand at 429.641 kb on + strand at 429.728 kb on + strand, within MPMX19_04121 at 429.728 kb on + strand, within MPMX19_04121 at 429.729 kb on - strand, within MPMX19_04121 at 429.729 kb on - strand, within MPMX19_04121 at 429.731 kb on + strand, within MPMX19_04121 at 429.731 kb on + strand, within MPMX19_04121 at 429.731 kb on + strand, within MPMX19_04121 at 429.732 kb on - strand, within MPMX19_04121 at 429.732 kb on - strand, within MPMX19_04121 at 430.073 kb on + strand, within MPMX19_04121 at 430.074 kb on - strand, within MPMX19_04121 at 430.074 kb on - strand, within MPMX19_04121 at 430.074 kb on - strand, within MPMX19_04121 at 430.074 kb on - strand, within MPMX19_04121 at 430.074 kb on - strand, within MPMX19_04121 at 430.074 kb on - strand, within MPMX19_04121
Per-strain Table
Position Strand Gene LocusTag Fraction NF remove 427,994 + MPMX19_04118 0.56 +0.3 427,995 - MPMX19_04118 0.56 +1.3 427,995 - MPMX19_04118 0.56 +0.9 427,995 - MPMX19_04118 0.56 -2.1 428,865 + MPMX19_04119 0.26 -0.6 428,866 - MPMX19_04119 0.26 +0.2 428,866 - MPMX19_04119 0.26 -0.8 428,925 + MPMX19_04119 0.41 +0.6 428,926 - MPMX19_04119 0.41 -1.1 428,926 - MPMX19_04119 0.41 -1.3 429,039 + MPMX19_04119 0.69 -2.1 429,039 + MPMX19_04119 0.69 -0.7 429,039 + MPMX19_04119 0.69 +0.2 429,040 - MPMX19_04119 0.69 -0.1 429,040 - MPMX19_04119 0.69 -1.3 429,040 - MPMX19_04119 0.69 -1.4 429,166 + +0.7 429,274 + MPMX19_04120 0.31 +0.5 429,274 + MPMX19_04120 0.31 -0.6 429,292 + MPMX19_04120 0.36 +0.2 429,292 + MPMX19_04120 0.36 -0.6 429,326 + MPMX19_04120 0.44 +0.2 429,326 + MPMX19_04120 0.44 +0.2 429,355 + MPMX19_04120 0.52 -0.8 429,355 + MPMX19_04120 0.52 -0.1 429,355 + MPMX19_04120 0.52 +1.3 429,355 + MPMX19_04120 0.52 -0.1 429,355 + MPMX19_04120 0.52 +0.3 429,500 + MPMX19_04120 0.89 -0.3 429,500 + MPMX19_04120 0.89 -0.2 429,528 + -0.3 429,528 + -0.3 429,528 + -0.7 429,529 - -0.7 429,529 - -0.2 429,587 + +1.1 429,587 + +0.2 429,587 + -0.7 429,588 - -2.5 429,588 - -0.7 429,588 - +0.9 429,588 - +0.2 429,588 - -2.5 429,588 - +0.1 429,599 - +0.4 429,641 + -0.1 429,641 + +0.9 429,728 + MPMX19_04121 0.16 -0.6 429,728 + MPMX19_04121 0.16 -0.7 429,729 - MPMX19_04121 0.16 -1.1 429,729 - MPMX19_04121 0.16 +0.2 429,731 + MPMX19_04121 0.16 +0.5 429,731 + MPMX19_04121 0.16 -1.7 429,731 + MPMX19_04121 0.16 -1.0 429,732 - MPMX19_04121 0.16 -1.1 429,732 - MPMX19_04121 0.16 +0.2 430,073 + MPMX19_04121 0.48 +0.2 430,074 - MPMX19_04121 0.48 -0.8 430,074 - MPMX19_04121 0.48 -1.3 430,074 - MPMX19_04121 0.48 -1.3 430,074 - MPMX19_04121 0.48 -0.8 430,074 - MPMX19_04121 0.48 -0.3 430,074 - MPMX19_04121 0.48 -0.6
Or see this region's nucleotide sequence