Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_04101

Experiment: NF

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_04099 and MPMX19_04100 are separated by 183 nucleotidesMPMX19_04100 and MPMX19_04101 are separated by 27 nucleotidesMPMX19_04101 and MPMX19_04102 are separated by 174 nucleotides MPMX19_04099: MPMX19_04099 - Chemotaxis protein CheY, at 405,854 to 406,285 _04099 MPMX19_04100: MPMX19_04100 - hypothetical protein, at 406,469 to 407,233 _04100 MPMX19_04101: MPMX19_04101 - hypothetical protein, at 407,261 to 408,565 _04101 MPMX19_04102: MPMX19_04102 - hypothetical protein, at 408,740 to 409,972 _04102 Position (kb) 407 408 409Strain fitness (log2 ratio) -2 -1 0 1 2at 406.369 kb on + strandat 406.369 kb on + strandat 406.369 kb on + strandat 406.369 kb on + strandat 406.369 kb on + strandat 406.369 kb on + strandat 406.370 kb on - strandat 406.370 kb on - strandat 406.370 kb on - strandat 406.370 kb on - strandat 406.687 kb on + strand, within MPMX19_04100at 406.687 kb on + strand, within MPMX19_04100at 406.688 kb on - strand, within MPMX19_04100at 406.688 kb on - strand, within MPMX19_04100at 406.688 kb on - strand, within MPMX19_04100at 406.688 kb on - strand, within MPMX19_04100at 406.688 kb on - strand, within MPMX19_04100at 407.486 kb on + strand, within MPMX19_04101at 407.486 kb on + strand, within MPMX19_04101at 407.486 kb on + strand, within MPMX19_04101at 407.486 kb on - strand, within MPMX19_04101at 407.487 kb on - strand, within MPMX19_04101at 407.555 kb on + strand, within MPMX19_04101at 407.555 kb on + strand, within MPMX19_04101at 407.556 kb on - strand, within MPMX19_04101at 407.556 kb on - strand, within MPMX19_04101at 407.600 kb on + strand, within MPMX19_04101at 407.600 kb on + strand, within MPMX19_04101at 407.600 kb on + strand, within MPMX19_04101at 407.600 kb on + strand, within MPMX19_04101at 407.600 kb on + strand, within MPMX19_04101at 407.600 kb on + strand, within MPMX19_04101at 407.600 kb on + strand, within MPMX19_04101at 407.600 kb on + strand, within MPMX19_04101at 407.600 kb on + strand, within MPMX19_04101at 407.600 kb on + strand, within MPMX19_04101at 407.600 kb on + strand, within MPMX19_04101at 407.600 kb on + strand, within MPMX19_04101at 407.600 kb on + strand, within MPMX19_04101at 407.600 kb on + strand, within MPMX19_04101at 407.600 kb on + strand, within MPMX19_04101at 407.600 kb on + strand, within MPMX19_04101at 407.600 kb on + strand, within MPMX19_04101at 407.600 kb on + strand, within MPMX19_04101at 407.600 kb on + strand, within MPMX19_04101at 407.600 kb on + strand, within MPMX19_04101at 407.600 kb on + strand, within MPMX19_04101at 407.600 kb on + strand, within MPMX19_04101at 407.600 kb on + strand, within MPMX19_04101at 407.600 kb on + strand, within MPMX19_04101at 407.601 kb on - strand, within MPMX19_04101at 407.601 kb on - strand, within MPMX19_04101at 407.601 kb on - strand, within MPMX19_04101at 407.601 kb on - strand, within MPMX19_04101at 407.601 kb on - strand, within MPMX19_04101at 407.601 kb on - strand, within MPMX19_04101at 407.601 kb on - strand, within MPMX19_04101at 407.601 kb on - strand, within MPMX19_04101at 407.601 kb on - strand, within MPMX19_04101at 407.601 kb on - strand, within MPMX19_04101at 407.601 kb on - strand, within MPMX19_04101at 407.601 kb on - strand, within MPMX19_04101at 407.601 kb on - strand, within MPMX19_04101at 407.601 kb on - strand, within MPMX19_04101at 407.601 kb on - strand, within MPMX19_04101at 407.997 kb on - strand, within MPMX19_04101at 407.997 kb on - strand, within MPMX19_04101at 408.209 kb on + strand, within MPMX19_04101at 408.209 kb on + strand, within MPMX19_04101at 408.210 kb on - strand, within MPMX19_04101at 408.210 kb on - strand, within MPMX19_04101at 408.210 kb on - strand, within MPMX19_04101at 408.210 kb on - strand, within MPMX19_04101at 408.587 kb on + strandat 408.588 kb on - strandat 408.588 kb on - strandat 408.588 kb on - strandat 408.595 kb on + strandat 408.595 kb on + strandat 408.595 kb on + strandat 408.595 kb on + strandat 408.596 kb on - strandat 408.596 kb on - strandat 408.596 kb on - strandat 408.596 kb on - strandat 408.620 kb on + strandat 408.620 kb on + strandat 408.620 kb on + strandat 408.620 kb on + strandat 408.620 kb on + strandat 408.620 kb on + strandat 408.621 kb on - strandat 408.621 kb on - strandat 408.621 kb on - strandat 408.649 kb on + strandat 408.649 kb on + strandat 408.649 kb on + strandat 408.649 kb on + strandat 408.649 kb on + strandat 408.649 kb on + strandat 408.650 kb on - strandat 408.650 kb on - strandat 408.650 kb on - strandat 408.650 kb on - strandat 408.650 kb on - strandat 408.650 kb on - strandat 408.650 kb on - strandat 408.869 kb on + strand, within MPMX19_04102at 408.869 kb on + strand, within MPMX19_04102at 408.870 kb on - strand, within MPMX19_04102at 408.870 kb on - strand, within MPMX19_04102at 409.011 kb on + strand, within MPMX19_04102at 409.011 kb on + strand, within MPMX19_04102at 409.011 kb on + strand, within MPMX19_04102at 409.011 kb on + strand, within MPMX19_04102at 409.012 kb on - strand, within MPMX19_04102at 409.012 kb on - strand, within MPMX19_04102at 409.091 kb on + strand, within MPMX19_04102at 409.091 kb on + strand, within MPMX19_04102at 409.091 kb on + strand, within MPMX19_04102at 409.091 kb on + strand, within MPMX19_04102at 409.457 kb on + strand, within MPMX19_04102at 409.457 kb on + strand, within MPMX19_04102at 409.457 kb on + strand, within MPMX19_04102at 409.457 kb on + strand, within MPMX19_04102at 409.457 kb on + strand, within MPMX19_04102at 409.457 kb on + strand, within MPMX19_04102at 409.457 kb on + strand, within MPMX19_04102at 409.457 kb on + strand, within MPMX19_04102at 409.457 kb on + strand, within MPMX19_04102at 409.458 kb on - strand, within MPMX19_04102at 409.458 kb on - strand, within MPMX19_04102at 409.458 kb on - strand, within MPMX19_04102at 409.458 kb on - strand, within MPMX19_04102at 409.458 kb on - strand, within MPMX19_04102at 409.458 kb on - strand, within MPMX19_04102at 409.458 kb on - strand, within MPMX19_04102at 409.458 kb on - strand, within MPMX19_04102

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Per-strain Table

Position Strand Gene LocusTag Fraction NF
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406,369 + +0.7
406,369 + -0.8
406,369 + -1.8
406,369 + -1.1
406,369 + -0.2
406,369 + +0.4
406,370 - -1.4
406,370 - -0.5
406,370 - +0.7
406,370 - +0.4
406,687 + MPMX19_04100 0.28 -1.4
406,687 + MPMX19_04100 0.28 -0.5
406,688 - MPMX19_04100 0.29 -1.3
406,688 - MPMX19_04100 0.29 -0.7
406,688 - MPMX19_04100 0.29 +0.2
406,688 - MPMX19_04100 0.29 -1.8
406,688 - MPMX19_04100 0.29 -0.4
407,486 + MPMX19_04101 0.17 +0.0
407,486 + MPMX19_04101 0.17 -0.1
407,486 + MPMX19_04101 0.17 -0.4
407,486 - MPMX19_04101 0.17 +0.8
407,487 - MPMX19_04101 0.17 +1.4
407,555 + MPMX19_04101 0.23 -0.1
407,555 + MPMX19_04101 0.23 +0.9
407,556 - MPMX19_04101 0.23 +0.4
407,556 - MPMX19_04101 0.23 -1.7
407,600 + MPMX19_04101 0.26 +0.4
407,600 + MPMX19_04101 0.26 -0.4
407,600 + MPMX19_04101 0.26 -0.1
407,600 + MPMX19_04101 0.26 +0.7
407,600 + MPMX19_04101 0.26 +0.5
407,600 + MPMX19_04101 0.26 +1.7
407,600 + MPMX19_04101 0.26 -1.6
407,600 + MPMX19_04101 0.26 +1.1
407,600 + MPMX19_04101 0.26 -0.1
407,600 + MPMX19_04101 0.26 -0.5
407,600 + MPMX19_04101 0.26 +1.7
407,600 + MPMX19_04101 0.26 +1.2
407,600 + MPMX19_04101 0.26 -0.6
407,600 + MPMX19_04101 0.26 -0.8
407,600 + MPMX19_04101 0.26 -0.3
407,600 + MPMX19_04101 0.26 -0.7
407,600 + MPMX19_04101 0.26 -1.6
407,600 + MPMX19_04101 0.26 -0.8
407,600 + MPMX19_04101 0.26 +0.2
407,600 + MPMX19_04101 0.26 -0.7
407,600 + MPMX19_04101 0.26 +0.7
407,600 + MPMX19_04101 0.26 +1.3
407,600 + MPMX19_04101 0.26 -1.3
407,600 + MPMX19_04101 0.26 -0.6
407,601 - MPMX19_04101 0.26 -1.2
407,601 - MPMX19_04101 0.26 +1.3
407,601 - MPMX19_04101 0.26 +0.4
407,601 - MPMX19_04101 0.26 +0.9
407,601 - MPMX19_04101 0.26 -1.7
407,601 - MPMX19_04101 0.26 -1.1
407,601 - MPMX19_04101 0.26 +0.3
407,601 - MPMX19_04101 0.26 -0.8
407,601 - MPMX19_04101 0.26 -0.3
407,601 - MPMX19_04101 0.26 +0.3
407,601 - MPMX19_04101 0.26 +0.0
407,601 - MPMX19_04101 0.26 -0.1
407,601 - MPMX19_04101 0.26 -0.3
407,601 - MPMX19_04101 0.26 +1.3
407,601 - MPMX19_04101 0.26 +0.0
407,997 - MPMX19_04101 0.56 -1.4
407,997 - MPMX19_04101 0.56 -0.6
408,209 + MPMX19_04101 0.73 +0.2
408,209 + MPMX19_04101 0.73 -0.3
408,210 - MPMX19_04101 0.73 +1.2
408,210 - MPMX19_04101 0.73 -1.7
408,210 - MPMX19_04101 0.73 -0.5
408,210 - MPMX19_04101 0.73 -0.1
408,587 + +0.6
408,588 - +0.2
408,588 - -1.4
408,588 - -0.3
408,595 + -1.5
408,595 + -0.5
408,595 + +0.7
408,595 + -1.2
408,596 - -0.3
408,596 - +0.4
408,596 - +0.7
408,596 - -2.4
408,620 + -0.6
408,620 + -0.3
408,620 + +0.0
408,620 + +0.1
408,620 + -0.2
408,620 + -0.3
408,621 - -0.2
408,621 - -1.4
408,621 - -0.8
408,649 + +1.4
408,649 + +0.4
408,649 + -0.9
408,649 + -0.5
408,649 + -2.0
408,649 + -0.7
408,650 - -0.6
408,650 - -0.1
408,650 - -0.2
408,650 - -2.0
408,650 - -1.6
408,650 - -1.1
408,650 - -0.5
408,869 + MPMX19_04102 0.10 -0.5
408,869 + MPMX19_04102 0.10 +1.2
408,870 - MPMX19_04102 0.11 -0.8
408,870 - MPMX19_04102 0.11 -0.6
409,011 + MPMX19_04102 0.22 +0.4
409,011 + MPMX19_04102 0.22 +0.7
409,011 + MPMX19_04102 0.22 -1.4
409,011 + MPMX19_04102 0.22 +1.7
409,012 - MPMX19_04102 0.22 -1.1
409,012 - MPMX19_04102 0.22 -1.8
409,091 + MPMX19_04102 0.28 +0.3
409,091 + MPMX19_04102 0.28 -1.1
409,091 + MPMX19_04102 0.28 +0.0
409,091 + MPMX19_04102 0.28 -1.8
409,457 + MPMX19_04102 0.58 -0.9
409,457 + MPMX19_04102 0.58 -0.2
409,457 + MPMX19_04102 0.58 -1.1
409,457 + MPMX19_04102 0.58 -1.3
409,457 + MPMX19_04102 0.58 -0.4
409,457 + MPMX19_04102 0.58 -1.8
409,457 + MPMX19_04102 0.58 +1.0
409,457 + MPMX19_04102 0.58 -1.7
409,457 + MPMX19_04102 0.58 -0.1
409,458 - MPMX19_04102 0.58 +0.3
409,458 - MPMX19_04102 0.58 -0.3
409,458 - MPMX19_04102 0.58 +1.7
409,458 - MPMX19_04102 0.58 -1.6
409,458 - MPMX19_04102 0.58 +0.5
409,458 - MPMX19_04102 0.58 +1.0
409,458 - MPMX19_04102 0.58 -1.9
409,458 - MPMX19_04102 0.58 +2.5

Or see this region's nucleotide sequence