Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_04088

Experiment: NF

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_04086 and MPMX19_04087 are separated by 19 nucleotidesMPMX19_04087 and MPMX19_04088 overlap by 4 nucleotidesMPMX19_04088 and MPMX19_04089 are separated by 46 nucleotides MPMX19_04086: MPMX19_04086 - hypothetical protein, at 388,559 to 390,463 _04086 MPMX19_04087: MPMX19_04087 - Flagellum site-determining protein YlxH, at 390,483 to 391,280 _04087 MPMX19_04088: MPMX19_04088 - Signal recognition particle 54 kDa protein, at 391,277 to 392,557 _04088 MPMX19_04089: MPMX19_04089 - Flagellar biosynthesis protein FlhA, at 392,604 to 394,775 _04089 Position (kb) 391 392 393Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 390.634 kb on + strand, within MPMX19_04087at 390.634 kb on + strand, within MPMX19_04087at 390.673 kb on + strand, within MPMX19_04087at 390.674 kb on - strand, within MPMX19_04087at 390.674 kb on - strand, within MPMX19_04087at 390.674 kb on - strand, within MPMX19_04087at 390.674 kb on - strand, within MPMX19_04087at 390.674 kb on - strand, within MPMX19_04087at 390.674 kb on - strand, within MPMX19_04087at 390.769 kb on + strand, within MPMX19_04087at 390.770 kb on - strand, within MPMX19_04087at 390.889 kb on + strand, within MPMX19_04087at 390.889 kb on + strand, within MPMX19_04087at 390.889 kb on + strand, within MPMX19_04087at 390.889 kb on + strand, within MPMX19_04087at 390.889 kb on + strand, within MPMX19_04087at 390.889 kb on + strand, within MPMX19_04087at 390.890 kb on - strand, within MPMX19_04087at 390.890 kb on - strand, within MPMX19_04087at 391.251 kb on + strandat 391.252 kb on - strandat 391.315 kb on + strandat 391.315 kb on + strandat 391.315 kb on + strandat 391.315 kb on + strandat 391.315 kb on + strandat 391.316 kb on - strandat 391.316 kb on - strandat 391.443 kb on + strand, within MPMX19_04088at 391.443 kb on + strand, within MPMX19_04088at 391.443 kb on + strand, within MPMX19_04088at 391.443 kb on + strand, within MPMX19_04088at 391.444 kb on - strand, within MPMX19_04088at 391.444 kb on - strand, within MPMX19_04088at 391.444 kb on - strand, within MPMX19_04088at 391.907 kb on - strand, within MPMX19_04088at 392.196 kb on + strand, within MPMX19_04088at 392.196 kb on + strand, within MPMX19_04088at 392.196 kb on + strand, within MPMX19_04088at 392.196 kb on + strand, within MPMX19_04088at 392.197 kb on - strand, within MPMX19_04088at 392.197 kb on - strand, within MPMX19_04088at 392.197 kb on - strand, within MPMX19_04088at 392.197 kb on - strand, within MPMX19_04088at 392.197 kb on - strand, within MPMX19_04088at 392.197 kb on - strand, within MPMX19_04088at 392.197 kb on - strand, within MPMX19_04088at 392.578 kb on + strandat 392.578 kb on + strandat 392.578 kb on + strandat 392.578 kb on + strandat 392.578 kb on + strandat 392.578 kb on + strandat 392.578 kb on + strandat 392.578 kb on + strandat 392.579 kb on - strandat 392.579 kb on - strandat 392.579 kb on - strandat 392.579 kb on - strandat 392.579 kb on - strandat 392.579 kb on - strandat 392.579 kb on - strandat 392.730 kb on + strandat 392.730 kb on + strandat 392.730 kb on + strandat 392.730 kb on + strandat 392.730 kb on + strandat 392.730 kb on + strandat 392.730 kb on + strandat 392.730 kb on + strandat 392.730 kb on + strandat 392.731 kb on - strandat 392.731 kb on - strandat 392.731 kb on - strandat 392.731 kb on - strandat 392.731 kb on - strandat 392.731 kb on - strandat 392.731 kb on - strandat 392.731 kb on - strandat 392.731 kb on - strandat 392.731 kb on - strandat 392.731 kb on - strandat 392.731 kb on - strandat 392.731 kb on - strandat 393.019 kb on - strand, within MPMX19_04089at 393.253 kb on + strand, within MPMX19_04089at 393.253 kb on + strand, within MPMX19_04089at 393.253 kb on + strand, within MPMX19_04089at 393.254 kb on - strand, within MPMX19_04089at 393.254 kb on - strand, within MPMX19_04089at 393.254 kb on - strand, within MPMX19_04089at 393.254 kb on - strand, within MPMX19_04089at 393.254 kb on - strand, within MPMX19_04089at 393.436 kb on + strand, within MPMX19_04089at 393.436 kb on + strand, within MPMX19_04089at 393.436 kb on + strand, within MPMX19_04089at 393.436 kb on + strand, within MPMX19_04089at 393.436 kb on + strand, within MPMX19_04089at 393.436 kb on + strand, within MPMX19_04089at 393.436 kb on + strand, within MPMX19_04089at 393.436 kb on + strand, within MPMX19_04089at 393.436 kb on + strand, within MPMX19_04089at 393.436 kb on + strand, within MPMX19_04089at 393.436 kb on + strand, within MPMX19_04089at 393.436 kb on + strand, within MPMX19_04089at 393.436 kb on + strand, within MPMX19_04089at 393.436 kb on + strand, within MPMX19_04089at 393.436 kb on + strand, within MPMX19_04089at 393.436 kb on + strand, within MPMX19_04089at 393.436 kb on + strand, within MPMX19_04089at 393.436 kb on + strand, within MPMX19_04089at 393.436 kb on + strand, within MPMX19_04089at 393.436 kb on + strand, within MPMX19_04089at 393.436 kb on + strand, within MPMX19_04089at 393.436 kb on + strand, within MPMX19_04089at 393.436 kb on + strand, within MPMX19_04089at 393.436 kb on + strand, within MPMX19_04089at 393.437 kb on - strand, within MPMX19_04089at 393.437 kb on - strand, within MPMX19_04089at 393.437 kb on - strand, within MPMX19_04089at 393.437 kb on - strand, within MPMX19_04089at 393.437 kb on - strand, within MPMX19_04089at 393.437 kb on - strand, within MPMX19_04089at 393.437 kb on - strand, within MPMX19_04089at 393.437 kb on - strand, within MPMX19_04089at 393.437 kb on - strand, within MPMX19_04089at 393.437 kb on - strand, within MPMX19_04089at 393.437 kb on - strand, within MPMX19_04089at 393.437 kb on - strand, within MPMX19_04089at 393.437 kb on - strand, within MPMX19_04089at 393.437 kb on - strand, within MPMX19_04089at 393.437 kb on - strand, within MPMX19_04089at 393.437 kb on - strand, within MPMX19_04089at 393.437 kb on - strand, within MPMX19_04089at 393.437 kb on - strand, within MPMX19_04089at 393.437 kb on - strand, within MPMX19_04089at 393.437 kb on - strand, within MPMX19_04089at 393.437 kb on - strand, within MPMX19_04089at 393.437 kb on - strand, within MPMX19_04089at 393.437 kb on - strand, within MPMX19_04089at 393.437 kb on - strand, within MPMX19_04089at 393.437 kb on - strand, within MPMX19_04089at 393.437 kb on - strand, within MPMX19_04089at 393.437 kb on - strand, within MPMX19_04089at 393.437 kb on - strand, within MPMX19_04089at 393.437 kb on - strand, within MPMX19_04089

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Per-strain Table

Position Strand Gene LocusTag Fraction NF
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390,634 + MPMX19_04087 0.19 -0.6
390,634 + MPMX19_04087 0.19 -1.1
390,673 + MPMX19_04087 0.24 +0.8
390,674 - MPMX19_04087 0.24 +0.8
390,674 - MPMX19_04087 0.24 -1.1
390,674 - MPMX19_04087 0.24 -0.6
390,674 - MPMX19_04087 0.24 +1.2
390,674 - MPMX19_04087 0.24 +0.2
390,674 - MPMX19_04087 0.24 +0.1
390,769 + MPMX19_04087 0.36 +1.8
390,770 - MPMX19_04087 0.36 -0.4
390,889 + MPMX19_04087 0.51 -1.6
390,889 + MPMX19_04087 0.51 -1.7
390,889 + MPMX19_04087 0.51 +0.4
390,889 + MPMX19_04087 0.51 -1.6
390,889 + MPMX19_04087 0.51 -1.1
390,889 + MPMX19_04087 0.51 -1.7
390,890 - MPMX19_04087 0.51 -0.1
390,890 - MPMX19_04087 0.51 -1.1
391,251 + -0.1
391,252 - -0.1
391,315 + -0.8
391,315 + +0.8
391,315 + -0.7
391,315 + -1.4
391,315 + -0.2
391,316 - +0.8
391,316 - +1.3
391,443 + MPMX19_04088 0.13 -1.7
391,443 + MPMX19_04088 0.13 +0.0
391,443 + MPMX19_04088 0.13 -1.4
391,443 + MPMX19_04088 0.13 -1.1
391,444 - MPMX19_04088 0.13 -0.2
391,444 - MPMX19_04088 0.13 -1.4
391,444 - MPMX19_04088 0.13 -0.6
391,907 - MPMX19_04088 0.49 -0.5
392,196 + MPMX19_04088 0.72 -0.2
392,196 + MPMX19_04088 0.72 +0.3
392,196 + MPMX19_04088 0.72 +0.4
392,196 + MPMX19_04088 0.72 +2.5
392,197 - MPMX19_04088 0.72 +0.9
392,197 - MPMX19_04088 0.72 +0.5
392,197 - MPMX19_04088 0.72 +0.9
392,197 - MPMX19_04088 0.72 +0.3
392,197 - MPMX19_04088 0.72 +1.1
392,197 - MPMX19_04088 0.72 -0.6
392,197 - MPMX19_04088 0.72 +0.1
392,578 + -2.6
392,578 + -2.5
392,578 + -1.3
392,578 + -0.5
392,578 + -1.2
392,578 + -0.5
392,578 + -1.6
392,578 + +0.2
392,579 - +0.1
392,579 - -1.0
392,579 - +0.8
392,579 - +0.2
392,579 - -1.3
392,579 - -2.2
392,579 - +0.2
392,730 + -0.1
392,730 + +0.1
392,730 + -1.0
392,730 + +0.8
392,730 + -0.4
392,730 + +0.6
392,730 + -0.5
392,730 + -0.5
392,730 + -0.4
392,731 - -0.5
392,731 - -0.3
392,731 - -0.7
392,731 - -0.2
392,731 - +0.8
392,731 - -1.1
392,731 - -0.7
392,731 - -0.8
392,731 - -0.8
392,731 - -1.3
392,731 - -1.8
392,731 - -0.5
392,731 - -1.7
393,019 - MPMX19_04089 0.19 +0.4
393,253 + MPMX19_04089 0.30 +0.1
393,253 + MPMX19_04089 0.30 -0.3
393,253 + MPMX19_04089 0.30 +1.0
393,254 - MPMX19_04089 0.30 +0.8
393,254 - MPMX19_04089 0.30 +0.1
393,254 - MPMX19_04089 0.30 -2.6
393,254 - MPMX19_04089 0.30 -1.2
393,254 - MPMX19_04089 0.30 -0.6
393,436 + MPMX19_04089 0.38 -0.6
393,436 + MPMX19_04089 0.38 -0.2
393,436 + MPMX19_04089 0.38 -0.9
393,436 + MPMX19_04089 0.38 +0.7
393,436 + MPMX19_04089 0.38 +0.2
393,436 + MPMX19_04089 0.38 -2.0
393,436 + MPMX19_04089 0.38 -0.2
393,436 + MPMX19_04089 0.38 -0.4
393,436 + MPMX19_04089 0.38 +0.1
393,436 + MPMX19_04089 0.38 -0.3
393,436 + MPMX19_04089 0.38 +0.5
393,436 + MPMX19_04089 0.38 +0.7
393,436 + MPMX19_04089 0.38 -0.1
393,436 + MPMX19_04089 0.38 -1.3
393,436 + MPMX19_04089 0.38 +0.2
393,436 + MPMX19_04089 0.38 +0.6
393,436 + MPMX19_04089 0.38 +0.0
393,436 + MPMX19_04089 0.38 +0.3
393,436 + MPMX19_04089 0.38 -0.6
393,436 + MPMX19_04089 0.38 +0.0
393,436 + MPMX19_04089 0.38 -1.3
393,436 + MPMX19_04089 0.38 +0.5
393,436 + MPMX19_04089 0.38 -0.8
393,436 + MPMX19_04089 0.38 +0.0
393,437 - MPMX19_04089 0.38 +0.0
393,437 - MPMX19_04089 0.38 +0.5
393,437 - MPMX19_04089 0.38 +0.2
393,437 - MPMX19_04089 0.38 +0.5
393,437 - MPMX19_04089 0.38 +0.7
393,437 - MPMX19_04089 0.38 -0.7
393,437 - MPMX19_04089 0.38 +0.0
393,437 - MPMX19_04089 0.38 -1.8
393,437 - MPMX19_04089 0.38 +0.2
393,437 - MPMX19_04089 0.38 -0.6
393,437 - MPMX19_04089 0.38 +0.3
393,437 - MPMX19_04089 0.38 -1.0
393,437 - MPMX19_04089 0.38 -0.6
393,437 - MPMX19_04089 0.38 -1.3
393,437 - MPMX19_04089 0.38 -1.4
393,437 - MPMX19_04089 0.38 -0.3
393,437 - MPMX19_04089 0.38 +0.3
393,437 - MPMX19_04089 0.38 -0.7
393,437 - MPMX19_04089 0.38 -0.3
393,437 - MPMX19_04089 0.38 -1.1
393,437 - MPMX19_04089 0.38 -0.3
393,437 - MPMX19_04089 0.38 -1.7
393,437 - MPMX19_04089 0.38 -1.1
393,437 - MPMX19_04089 0.38 -1.2
393,437 - MPMX19_04089 0.38 -2.1
393,437 - MPMX19_04089 0.38 -0.6
393,437 - MPMX19_04089 0.38 -0.6
393,437 - MPMX19_04089 0.38 -3.4
393,437 - MPMX19_04089 0.38 -0.8

Or see this region's nucleotide sequence