Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_04076

Experiment: NF

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX19_04075 and MPMX19_04076 are separated by 255 nucleotidesMPMX19_04076 and MPMX19_04077 are separated by 67 nucleotides MPMX19_04075: MPMX19_04075 - Aldose 1-epimerase, at 381,281 to 382,366 _04075 MPMX19_04076: MPMX19_04076 - hypothetical protein, at 382,622 to 383,344 _04076 MPMX19_04077: MPMX19_04077 - Adaptive-response sensory-kinase SasA, at 383,412 to 384,773 _04077 Position (kb) 382 383 384Strain fitness (log2 ratio) -2 -1 0 1 2at 381.753 kb on + strand, within MPMX19_04075at 381.910 kb on + strand, within MPMX19_04075at 381.910 kb on + strand, within MPMX19_04075at 381.910 kb on + strand, within MPMX19_04075at 381.911 kb on - strand, within MPMX19_04075at 381.911 kb on - strand, within MPMX19_04075at 381.911 kb on - strand, within MPMX19_04075at 381.911 kb on - strand, within MPMX19_04075at 381.911 kb on - strand, within MPMX19_04075at 381.911 kb on - strand, within MPMX19_04075at 381.911 kb on - strand, within MPMX19_04075at 381.911 kb on - strand, within MPMX19_04075at 381.912 kb on + strand, within MPMX19_04075at 381.912 kb on + strand, within MPMX19_04075at 381.912 kb on + strand, within MPMX19_04075at 381.912 kb on + strand, within MPMX19_04075at 381.912 kb on + strand, within MPMX19_04075at 381.912 kb on + strand, within MPMX19_04075at 381.913 kb on - strand, within MPMX19_04075at 381.913 kb on - strand, within MPMX19_04075at 381.913 kb on - strand, within MPMX19_04075at 381.913 kb on - strand, within MPMX19_04075at 381.913 kb on - strand, within MPMX19_04075at 381.913 kb on - strand, within MPMX19_04075at 381.969 kb on + strand, within MPMX19_04075at 381.969 kb on + strand, within MPMX19_04075at 381.969 kb on + strand, within MPMX19_04075at 381.969 kb on + strand, within MPMX19_04075at 381.969 kb on + strand, within MPMX19_04075at 381.969 kb on + strand, within MPMX19_04075at 381.969 kb on + strand, within MPMX19_04075at 381.969 kb on + strand, within MPMX19_04075at 381.969 kb on + strand, within MPMX19_04075at 381.969 kb on + strand, within MPMX19_04075at 381.969 kb on + strand, within MPMX19_04075at 381.969 kb on + strand, within MPMX19_04075at 381.969 kb on + strand, within MPMX19_04075at 381.969 kb on + strand, within MPMX19_04075at 381.969 kb on + strand, within MPMX19_04075at 381.969 kb on + strand, within MPMX19_04075at 381.969 kb on + strand, within MPMX19_04075at 381.969 kb on + strand, within MPMX19_04075at 381.969 kb on + strand, within MPMX19_04075at 381.969 kb on + strand, within MPMX19_04075at 381.969 kb on + strand, within MPMX19_04075at 381.970 kb on - strand, within MPMX19_04075at 381.970 kb on - strand, within MPMX19_04075at 381.970 kb on - strand, within MPMX19_04075at 381.970 kb on - strand, within MPMX19_04075at 381.970 kb on - strand, within MPMX19_04075at 381.970 kb on - strand, within MPMX19_04075at 381.970 kb on - strand, within MPMX19_04075at 381.970 kb on - strand, within MPMX19_04075at 381.970 kb on - strand, within MPMX19_04075at 381.970 kb on - strand, within MPMX19_04075at 381.970 kb on - strand, within MPMX19_04075at 381.970 kb on - strand, within MPMX19_04075at 381.970 kb on - strand, within MPMX19_04075at 381.970 kb on - strand, within MPMX19_04075at 382.128 kb on + strand, within MPMX19_04075at 382.128 kb on + strand, within MPMX19_04075at 382.129 kb on - strand, within MPMX19_04075at 382.188 kb on + strand, within MPMX19_04075at 382.188 kb on + strand, within MPMX19_04075at 382.188 kb on + strand, within MPMX19_04075at 382.188 kb on + strand, within MPMX19_04075at 382.188 kb on + strand, within MPMX19_04075at 382.189 kb on - strand, within MPMX19_04075at 382.189 kb on - strand, within MPMX19_04075at 382.189 kb on - strand, within MPMX19_04075at 382.257 kb on + strand, within MPMX19_04075at 382.257 kb on + strand, within MPMX19_04075at 382.257 kb on + strand, within MPMX19_04075at 382.257 kb on + strand, within MPMX19_04075at 382.257 kb on + strand, within MPMX19_04075at 382.257 kb on + strand, within MPMX19_04075at 382.257 kb on + strand, within MPMX19_04075at 382.258 kb on - strandat 382.258 kb on - strandat 382.258 kb on - strandat 382.258 kb on - strandat 382.338 kb on + strandat 382.338 kb on + strandat 382.338 kb on + strandat 382.338 kb on + strandat 382.338 kb on + strandat 382.338 kb on + strandat 382.338 kb on + strandat 382.338 kb on + strandat 382.338 kb on + strandat 382.338 kb on + strandat 382.338 kb on + strandat 382.339 kb on - strandat 382.339 kb on - strandat 382.339 kb on - strandat 382.339 kb on - strandat 382.339 kb on - strandat 382.339 kb on - strandat 382.339 kb on - strandat 382.339 kb on - strandat 382.392 kb on + strandat 382.392 kb on + strandat 382.393 kb on - strandat 382.490 kb on - strandat 382.490 kb on - strandat 382.566 kb on + strandat 382.566 kb on + strandat 382.566 kb on + strandat 382.566 kb on + strandat 382.566 kb on + strandat 382.567 kb on - strandat 382.567 kb on - strandat 382.567 kb on - strandat 382.567 kb on - strandat 382.567 kb on - strandat 382.567 kb on - strandat 382.567 kb on - strandat 382.567 kb on - strandat 382.567 kb on - strandat 382.567 kb on - strandat 382.567 kb on - strandat 382.567 kb on - strandat 383.082 kb on + strand, within MPMX19_04076at 383.082 kb on + strand, within MPMX19_04076at 383.082 kb on + strand, within MPMX19_04076at 383.082 kb on + strand, within MPMX19_04076at 383.082 kb on + strand, within MPMX19_04076at 383.082 kb on + strand, within MPMX19_04076at 383.082 kb on + strand, within MPMX19_04076at 383.083 kb on - strand, within MPMX19_04076at 383.083 kb on - strand, within MPMX19_04076at 383.097 kb on + strand, within MPMX19_04076at 383.097 kb on + strand, within MPMX19_04076at 383.098 kb on - strand, within MPMX19_04076at 383.098 kb on - strand, within MPMX19_04076at 383.190 kb on + strand, within MPMX19_04076at 383.190 kb on + strand, within MPMX19_04076at 383.190 kb on + strand, within MPMX19_04076at 383.190 kb on + strand, within MPMX19_04076at 383.190 kb on + strand, within MPMX19_04076at 383.190 kb on + strand, within MPMX19_04076at 383.190 kb on + strand, within MPMX19_04076at 383.190 kb on + strand, within MPMX19_04076at 383.190 kb on + strand, within MPMX19_04076at 383.190 kb on + strand, within MPMX19_04076at 383.190 kb on + strand, within MPMX19_04076at 383.190 kb on + strand, within MPMX19_04076at 383.190 kb on + strand, within MPMX19_04076at 383.190 kb on + strand, within MPMX19_04076at 383.190 kb on + strand, within MPMX19_04076at 383.190 kb on + strand, within MPMX19_04076at 383.190 kb on + strand, within MPMX19_04076at 383.190 kb on + strand, within MPMX19_04076at 383.190 kb on + strand, within MPMX19_04076at 383.190 kb on + strand, within MPMX19_04076at 383.190 kb on + strand, within MPMX19_04076at 383.190 kb on + strand, within MPMX19_04076at 383.190 kb on - strand, within MPMX19_04076at 383.191 kb on - strand, within MPMX19_04076at 383.191 kb on - strand, within MPMX19_04076at 383.191 kb on - strand, within MPMX19_04076at 383.191 kb on - strand, within MPMX19_04076at 383.191 kb on - strand, within MPMX19_04076at 383.191 kb on - strand, within MPMX19_04076at 383.191 kb on - strand, within MPMX19_04076at 383.191 kb on - strand, within MPMX19_04076at 383.191 kb on - strand, within MPMX19_04076at 383.191 kb on - strand, within MPMX19_04076at 383.191 kb on - strand, within MPMX19_04076at 383.191 kb on - strand, within MPMX19_04076at 383.191 kb on - strand, within MPMX19_04076at 383.191 kb on - strand, within MPMX19_04076at 383.191 kb on - strand, within MPMX19_04076at 383.191 kb on - strand, within MPMX19_04076at 383.191 kb on - strand, within MPMX19_04076at 383.191 kb on - strand, within MPMX19_04076at 383.191 kb on - strand, within MPMX19_04076at 383.191 kb on - strand, within MPMX19_04076at 383.191 kb on - strand, within MPMX19_04076at 383.191 kb on - strand, within MPMX19_04076at 383.191 kb on - strand, within MPMX19_04076at 383.191 kb on - strand, within MPMX19_04076at 383.191 kb on - strand, within MPMX19_04076at 383.191 kb on - strand, within MPMX19_04076at 383.191 kb on - strand, within MPMX19_04076at 383.191 kb on - strand, within MPMX19_04076at 383.191 kb on - strand, within MPMX19_04076at 383.191 kb on - strand, within MPMX19_04076at 383.191 kb on - strand, within MPMX19_04076at 383.191 kb on - strand, within MPMX19_04076at 383.388 kb on + strandat 383.389 kb on - strandat 383.389 kb on - strandat 383.389 kb on - strandat 383.491 kb on + strandat 383.491 kb on + strandat 383.491 kb on + strandat 383.491 kb on + strandat 383.491 kb on + strandat 383.492 kb on - strandat 383.492 kb on - strandat 383.492 kb on - strandat 383.897 kb on + strand, within MPMX19_04077at 383.897 kb on + strand, within MPMX19_04077at 383.897 kb on + strand, within MPMX19_04077at 383.897 kb on + strand, within MPMX19_04077at 383.897 kb on + strand, within MPMX19_04077at 383.897 kb on + strand, within MPMX19_04077at 383.897 kb on + strand, within MPMX19_04077at 383.897 kb on + strand, within MPMX19_04077at 383.897 kb on + strand, within MPMX19_04077at 383.897 kb on + strand, within MPMX19_04077at 383.897 kb on + strand, within MPMX19_04077at 383.897 kb on + strand, within MPMX19_04077at 383.897 kb on + strand, within MPMX19_04077at 383.897 kb on + strand, within MPMX19_04077at 383.898 kb on - strand, within MPMX19_04077at 383.898 kb on - strand, within MPMX19_04077at 383.898 kb on - strand, within MPMX19_04077at 383.898 kb on - strand, within MPMX19_04077at 383.898 kb on - strand, within MPMX19_04077

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction NF
remove
381,753 + MPMX19_04075 0.43 +0.8
381,910 + MPMX19_04075 0.58 -1.5
381,910 + MPMX19_04075 0.58 -1.1
381,910 + MPMX19_04075 0.58 -1.2
381,911 - MPMX19_04075 0.58 +0.5
381,911 - MPMX19_04075 0.58 -1.4
381,911 - MPMX19_04075 0.58 -0.1
381,911 - MPMX19_04075 0.58 -0.6
381,911 - MPMX19_04075 0.58 -0.2
381,911 - MPMX19_04075 0.58 -1.0
381,911 - MPMX19_04075 0.58 -1.0
381,911 - MPMX19_04075 0.58 -1.1
381,912 + MPMX19_04075 0.58 -2.5
381,912 + MPMX19_04075 0.58 +0.5
381,912 + MPMX19_04075 0.58 -1.8
381,912 + MPMX19_04075 0.58 +1.2
381,912 + MPMX19_04075 0.58 -0.8
381,912 + MPMX19_04075 0.58 -1.3
381,913 - MPMX19_04075 0.58 -0.9
381,913 - MPMX19_04075 0.58 -1.0
381,913 - MPMX19_04075 0.58 +0.1
381,913 - MPMX19_04075 0.58 -1.2
381,913 - MPMX19_04075 0.58 -0.1
381,913 - MPMX19_04075 0.58 -1.4
381,969 + MPMX19_04075 0.63 -2.6
381,969 + MPMX19_04075 0.63 -0.8
381,969 + MPMX19_04075 0.63 -0.5
381,969 + MPMX19_04075 0.63 -1.8
381,969 + MPMX19_04075 0.63 +0.4
381,969 + MPMX19_04075 0.63 -0.8
381,969 + MPMX19_04075 0.63 +0.0
381,969 + MPMX19_04075 0.63 -0.1
381,969 + MPMX19_04075 0.63 -0.1
381,969 + MPMX19_04075 0.63 -0.2
381,969 + MPMX19_04075 0.63 -0.6
381,969 + MPMX19_04075 0.63 -0.7
381,969 + MPMX19_04075 0.63 +1.3
381,969 + MPMX19_04075 0.63 -0.2
381,969 + MPMX19_04075 0.63 -0.2
381,969 + MPMX19_04075 0.63 +1.1
381,969 + MPMX19_04075 0.63 -0.2
381,969 + MPMX19_04075 0.63 -0.2
381,969 + MPMX19_04075 0.63 -0.6
381,969 + MPMX19_04075 0.63 -0.8
381,969 + MPMX19_04075 0.63 +0.2
381,970 - MPMX19_04075 0.63 -0.6
381,970 - MPMX19_04075 0.63 +1.0
381,970 - MPMX19_04075 0.63 -0.0
381,970 - MPMX19_04075 0.63 +0.2
381,970 - MPMX19_04075 0.63 +1.2
381,970 - MPMX19_04075 0.63 -0.6
381,970 - MPMX19_04075 0.63 -0.8
381,970 - MPMX19_04075 0.63 -1.8
381,970 - MPMX19_04075 0.63 +0.3
381,970 - MPMX19_04075 0.63 +1.8
381,970 - MPMX19_04075 0.63 -1.2
381,970 - MPMX19_04075 0.63 +0.8
381,970 - MPMX19_04075 0.63 -1.2
381,970 - MPMX19_04075 0.63 -0.1
382,128 + MPMX19_04075 0.78 +0.5
382,128 + MPMX19_04075 0.78 +0.4
382,129 - MPMX19_04075 0.78 -0.4
382,188 + MPMX19_04075 0.84 +0.5
382,188 + MPMX19_04075 0.84 -0.7
382,188 + MPMX19_04075 0.84 -2.2
382,188 + MPMX19_04075 0.84 +0.3
382,188 + MPMX19_04075 0.84 -0.4
382,189 - MPMX19_04075 0.84 -0.8
382,189 - MPMX19_04075 0.84 +1.0
382,189 - MPMX19_04075 0.84 +0.2
382,257 + MPMX19_04075 0.90 +1.6
382,257 + MPMX19_04075 0.90 +2.2
382,257 + MPMX19_04075 0.90 +0.8
382,257 + MPMX19_04075 0.90 -0.7
382,257 + MPMX19_04075 0.90 +0.3
382,257 + MPMX19_04075 0.90 +0.5
382,257 + MPMX19_04075 0.90 +0.7
382,258 - -0.6
382,258 - +1.1
382,258 - +0.5
382,258 - -0.1
382,338 + -0.3
382,338 + -0.6
382,338 + +0.3
382,338 + -0.8
382,338 + +0.2
382,338 + -1.1
382,338 + -1.6
382,338 + +0.1
382,338 + -0.5
382,338 + +0.1
382,338 + -1.2
382,339 - -0.8
382,339 - +0.8
382,339 - -1.4
382,339 - -0.3
382,339 - -0.3
382,339 - -0.6
382,339 - -1.2
382,339 - -0.4
382,392 + +0.3
382,392 + -1.4
382,393 - +1.8
382,490 - -0.2
382,490 - -0.7
382,566 + +1.3
382,566 + -0.1
382,566 + +0.0
382,566 + +0.4
382,566 + -1.4
382,567 - -1.1
382,567 - -0.8
382,567 - +0.2
382,567 - +1.0
382,567 - -0.4
382,567 - -0.1
382,567 - +1.8
382,567 - -0.5
382,567 - -1.1
382,567 - -1.3
382,567 - -2.1
382,567 - +1.8
383,082 + MPMX19_04076 0.64 +0.8
383,082 + MPMX19_04076 0.64 +1.0
383,082 + MPMX19_04076 0.64 -0.1
383,082 + MPMX19_04076 0.64 -0.7
383,082 + MPMX19_04076 0.64 +0.9
383,082 + MPMX19_04076 0.64 -0.2
383,082 + MPMX19_04076 0.64 -0.4
383,083 - MPMX19_04076 0.64 -0.8
383,083 - MPMX19_04076 0.64 -0.2
383,097 + MPMX19_04076 0.66 -1.6
383,097 + MPMX19_04076 0.66 -1.0
383,098 - MPMX19_04076 0.66 +0.1
383,098 - MPMX19_04076 0.66 +0.5
383,190 + MPMX19_04076 0.79 -2.1
383,190 + MPMX19_04076 0.79 +1.3
383,190 + MPMX19_04076 0.79 +0.7
383,190 + MPMX19_04076 0.79 +0.2
383,190 + MPMX19_04076 0.79 -0.2
383,190 + MPMX19_04076 0.79 -1.1
383,190 + MPMX19_04076 0.79 -0.5
383,190 + MPMX19_04076 0.79 -1.9
383,190 + MPMX19_04076 0.79 +0.2
383,190 + MPMX19_04076 0.79 -0.7
383,190 + MPMX19_04076 0.79 -0.1
383,190 + MPMX19_04076 0.79 -0.2
383,190 + MPMX19_04076 0.79 -1.1
383,190 + MPMX19_04076 0.79 -0.1
383,190 + MPMX19_04076 0.79 +0.9
383,190 + MPMX19_04076 0.79 -0.2
383,190 + MPMX19_04076 0.79 +1.8
383,190 + MPMX19_04076 0.79 +0.4
383,190 + MPMX19_04076 0.79 +0.1
383,190 + MPMX19_04076 0.79 -1.3
383,190 + MPMX19_04076 0.79 +1.0
383,190 + MPMX19_04076 0.79 +0.3
383,190 - MPMX19_04076 0.79 +0.2
383,191 - MPMX19_04076 0.79 -0.5
383,191 - MPMX19_04076 0.79 -1.2
383,191 - MPMX19_04076 0.79 +0.2
383,191 - MPMX19_04076 0.79 +0.4
383,191 - MPMX19_04076 0.79 -1.2
383,191 - MPMX19_04076 0.79 +1.1
383,191 - MPMX19_04076 0.79 +0.3
383,191 - MPMX19_04076 0.79 +0.4
383,191 - MPMX19_04076 0.79 -0.8
383,191 - MPMX19_04076 0.79 -0.4
383,191 - MPMX19_04076 0.79 -0.2
383,191 - MPMX19_04076 0.79 -2.1
383,191 - MPMX19_04076 0.79 -0.8
383,191 - MPMX19_04076 0.79 -0.2
383,191 - MPMX19_04076 0.79 -0.6
383,191 - MPMX19_04076 0.79 -0.8
383,191 - MPMX19_04076 0.79 +1.8
383,191 - MPMX19_04076 0.79 -0.8
383,191 - MPMX19_04076 0.79 +0.6
383,191 - MPMX19_04076 0.79 -1.2
383,191 - MPMX19_04076 0.79 +0.6
383,191 - MPMX19_04076 0.79 +1.0
383,191 - MPMX19_04076 0.79 -0.4
383,191 - MPMX19_04076 0.79 +0.2
383,191 - MPMX19_04076 0.79 +0.6
383,191 - MPMX19_04076 0.79 +0.7
383,191 - MPMX19_04076 0.79 +0.1
383,191 - MPMX19_04076 0.79 +0.8
383,191 - MPMX19_04076 0.79 -1.7
383,191 - MPMX19_04076 0.79 -0.8
383,191 - MPMX19_04076 0.79 +0.4
383,191 - MPMX19_04076 0.79 -1.6
383,388 + -0.1
383,389 - -0.2
383,389 - -0.2
383,389 - -0.8
383,491 + -0.3
383,491 + -0.9
383,491 + -0.2
383,491 + -0.5
383,491 + -2.3
383,492 - -0.3
383,492 - -1.5
383,492 - -1.3
383,897 + MPMX19_04077 0.36 +1.3
383,897 + MPMX19_04077 0.36 -0.2
383,897 + MPMX19_04077 0.36 +0.8
383,897 + MPMX19_04077 0.36 +0.2
383,897 + MPMX19_04077 0.36 +1.5
383,897 + MPMX19_04077 0.36 +1.1
383,897 + MPMX19_04077 0.36 -1.9
383,897 + MPMX19_04077 0.36 +0.4
383,897 + MPMX19_04077 0.36 -0.4
383,897 + MPMX19_04077 0.36 -0.8
383,897 + MPMX19_04077 0.36 -2.2
383,897 + MPMX19_04077 0.36 -2.2
383,897 + MPMX19_04077 0.36 -0.6
383,897 + MPMX19_04077 0.36 -0.5
383,898 - MPMX19_04077 0.36 -0.8
383,898 - MPMX19_04077 0.36 -1.3
383,898 - MPMX19_04077 0.36 -1.1
383,898 - MPMX19_04077 0.36 -1.4
383,898 - MPMX19_04077 0.36 +0.4

Or see this region's nucleotide sequence