Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_04028

Experiment: NF

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_04026 and MPMX19_04027 are separated by 236 nucleotidesMPMX19_04027 and MPMX19_04028 are separated by 30 nucleotidesMPMX19_04028 and MPMX19_04029 are separated by 150 nucleotides MPMX19_04026: MPMX19_04026 - hypothetical protein, at 321,611 to 322,474 _04026 MPMX19_04027: MPMX19_04027 - Inosine-5'-monophosphate dehydrogenase, at 322,711 to 323,412 _04027 MPMX19_04028: MPMX19_04028 - Gamma-glutamylputrescine oxidoreductase, at 323,443 to 324,738 _04028 MPMX19_04029: MPMX19_04029 - Glycine cleavage system transcriptional activator, at 324,889 to 325,812 _04029 Position (kb) 323 324 325Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 322.472 kb on + strandat 322.472 kb on + strandat 322.472 kb on + strandat 322.473 kb on - strandat 322.473 kb on - strandat 322.485 kb on + strandat 322.486 kb on - strandat 322.535 kb on + strandat 322.535 kb on + strandat 322.536 kb on - strandat 322.603 kb on - strandat 322.630 kb on + strandat 322.642 kb on - strandat 322.671 kb on + strandat 322.671 kb on + strandat 322.671 kb on + strandat 322.672 kb on - strandat 322.672 kb on - strandat 322.672 kb on - strandat 323.319 kb on - strand, within MPMX19_04027at 323.410 kb on + strandat 323.410 kb on + strandat 323.410 kb on + strandat 323.411 kb on - strandat 323.415 kb on + strandat 323.415 kb on + strandat 323.415 kb on + strandat 323.416 kb on - strandat 323.416 kb on - strandat 323.416 kb on - strandat 323.495 kb on + strandat 323.495 kb on + strandat 323.496 kb on - strandat 323.496 kb on - strandat 323.496 kb on - strandat 323.501 kb on + strandat 323.501 kb on + strandat 323.501 kb on + strandat 323.501 kb on + strandat 323.501 kb on + strandat 323.501 kb on + strandat 323.501 kb on + strandat 323.502 kb on - strandat 323.502 kb on - strandat 323.502 kb on - strandat 323.502 kb on - strandat 323.502 kb on - strandat 323.502 kb on - strandat 323.502 kb on - strandat 323.502 kb on - strandat 323.502 kb on - strandat 323.502 kb on - strandat 323.502 kb on - strandat 323.502 kb on - strandat 323.645 kb on + strand, within MPMX19_04028at 323.646 kb on - strand, within MPMX19_04028at 323.646 kb on - strand, within MPMX19_04028at 323.646 kb on - strand, within MPMX19_04028at 323.646 kb on - strand, within MPMX19_04028at 323.646 kb on - strand, within MPMX19_04028at 323.723 kb on + strand, within MPMX19_04028at 323.871 kb on - strand, within MPMX19_04028at 323.969 kb on + strand, within MPMX19_04028at 323.969 kb on + strand, within MPMX19_04028at 323.970 kb on - strand, within MPMX19_04028at 324.020 kb on + strand, within MPMX19_04028at 324.020 kb on + strand, within MPMX19_04028at 324.020 kb on + strand, within MPMX19_04028at 324.021 kb on - strand, within MPMX19_04028at 324.176 kb on + strand, within MPMX19_04028at 324.176 kb on + strand, within MPMX19_04028at 324.176 kb on + strand, within MPMX19_04028at 324.176 kb on + strand, within MPMX19_04028at 324.176 kb on + strand, within MPMX19_04028at 324.177 kb on - strand, within MPMX19_04028at 324.177 kb on - strand, within MPMX19_04028at 324.177 kb on - strand, within MPMX19_04028at 324.177 kb on - strand, within MPMX19_04028at 324.227 kb on + strand, within MPMX19_04028at 324.227 kb on + strand, within MPMX19_04028at 324.227 kb on + strand, within MPMX19_04028at 324.227 kb on + strand, within MPMX19_04028at 324.227 kb on + strand, within MPMX19_04028at 324.227 kb on + strand, within MPMX19_04028at 324.227 kb on + strand, within MPMX19_04028at 324.227 kb on + strand, within MPMX19_04028at 324.227 kb on + strand, within MPMX19_04028at 324.227 kb on + strand, within MPMX19_04028at 324.227 kb on + strand, within MPMX19_04028at 324.228 kb on - strand, within MPMX19_04028at 324.228 kb on - strand, within MPMX19_04028at 324.228 kb on - strand, within MPMX19_04028at 324.228 kb on - strand, within MPMX19_04028at 324.458 kb on + strand, within MPMX19_04028at 324.458 kb on + strand, within MPMX19_04028at 324.458 kb on + strand, within MPMX19_04028at 324.458 kb on + strand, within MPMX19_04028at 324.459 kb on - strand, within MPMX19_04028at 324.623 kb on + strandat 324.623 kb on + strandat 324.624 kb on - strandat 324.805 kb on + strandat 325.099 kb on + strand, within MPMX19_04029at 325.099 kb on + strand, within MPMX19_04029at 325.100 kb on - strand, within MPMX19_04029at 325.100 kb on - strand, within MPMX19_04029at 325.102 kb on + strand, within MPMX19_04029at 325.102 kb on + strand, within MPMX19_04029at 325.102 kb on + strand, within MPMX19_04029at 325.102 kb on + strand, within MPMX19_04029at 325.102 kb on + strand, within MPMX19_04029at 325.102 kb on + strand, within MPMX19_04029at 325.102 kb on + strand, within MPMX19_04029at 325.102 kb on + strand, within MPMX19_04029at 325.102 kb on + strand, within MPMX19_04029at 325.102 kb on + strand, within MPMX19_04029at 325.102 kb on + strand, within MPMX19_04029at 325.103 kb on - strand, within MPMX19_04029at 325.103 kb on - strand, within MPMX19_04029at 325.103 kb on - strand, within MPMX19_04029at 325.103 kb on - strand, within MPMX19_04029at 325.103 kb on - strand, within MPMX19_04029at 325.103 kb on - strand, within MPMX19_04029at 325.103 kb on - strand, within MPMX19_04029at 325.103 kb on - strand, within MPMX19_04029at 325.171 kb on + strand, within MPMX19_04029at 325.693 kb on + strand, within MPMX19_04029at 325.693 kb on + strand, within MPMX19_04029at 325.693 kb on + strand, within MPMX19_04029at 325.693 kb on + strand, within MPMX19_04029at 325.693 kb on + strand, within MPMX19_04029at 325.693 kb on + strand, within MPMX19_04029at 325.693 kb on + strand, within MPMX19_04029at 325.694 kb on - strand, within MPMX19_04029at 325.696 kb on + strand, within MPMX19_04029at 325.696 kb on + strand, within MPMX19_04029at 325.696 kb on + strand, within MPMX19_04029at 325.696 kb on + strand, within MPMX19_04029at 325.696 kb on + strand, within MPMX19_04029at 325.696 kb on + strand, within MPMX19_04029at 325.696 kb on + strand, within MPMX19_04029at 325.696 kb on + strand, within MPMX19_04029at 325.696 kb on + strand, within MPMX19_04029at 325.697 kb on - strand, within MPMX19_04029at 325.697 kb on - strand, within MPMX19_04029at 325.697 kb on - strand, within MPMX19_04029at 325.697 kb on - strand, within MPMX19_04029at 325.697 kb on - strand, within MPMX19_04029at 325.697 kb on - strand, within MPMX19_04029at 325.697 kb on - strand, within MPMX19_04029at 325.697 kb on - strand, within MPMX19_04029

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Per-strain Table

Position Strand Gene LocusTag Fraction NF
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322,472 + -0.7
322,472 + -0.3
322,472 + -0.5
322,473 - -1.3
322,473 - +0.4
322,485 + -0.3
322,486 - +0.3
322,535 + +1.7
322,535 + -0.3
322,536 - -0.7
322,603 - +0.3
322,630 + -2.7
322,642 - -1.6
322,671 + -0.8
322,671 + -0.4
322,671 + -1.5
322,672 - +0.2
322,672 - -0.8
322,672 - +0.2
323,319 - MPMX19_04027 0.87 -1.7
323,410 + +0.5
323,410 + +1.2
323,410 + -0.1
323,411 - -0.3
323,415 + -0.9
323,415 + -1.3
323,415 + -0.3
323,416 - -1.4
323,416 - -2.3
323,416 - -0.8
323,495 + -0.3
323,495 + -1.0
323,496 - -0.4
323,496 - -0.2
323,496 - -0.4
323,501 + -1.2
323,501 + +0.3
323,501 + -2.0
323,501 + +0.3
323,501 + -1.3
323,501 + +1.7
323,501 + -0.1
323,502 - -1.6
323,502 - -1.8
323,502 - -2.1
323,502 - +1.9
323,502 - +0.5
323,502 - +0.8
323,502 - +0.3
323,502 - -0.2
323,502 - -0.6
323,502 - -1.5
323,502 - -1.3
323,502 - -0.3
323,645 + MPMX19_04028 0.16 -0.9
323,646 - MPMX19_04028 0.16 +0.7
323,646 - MPMX19_04028 0.16 -1.4
323,646 - MPMX19_04028 0.16 -0.8
323,646 - MPMX19_04028 0.16 -0.9
323,646 - MPMX19_04028 0.16 +0.0
323,723 + MPMX19_04028 0.22 +0.7
323,871 - MPMX19_04028 0.33 -0.3
323,969 + MPMX19_04028 0.41 +0.7
323,969 + MPMX19_04028 0.41 +1.5
323,970 - MPMX19_04028 0.41 -0.8
324,020 + MPMX19_04028 0.45 -0.1
324,020 + MPMX19_04028 0.45 -0.4
324,020 + MPMX19_04028 0.45 -0.3
324,021 - MPMX19_04028 0.45 +0.6
324,176 + MPMX19_04028 0.57 -1.1
324,176 + MPMX19_04028 0.57 -1.3
324,176 + MPMX19_04028 0.57 +0.1
324,176 + MPMX19_04028 0.57 +0.7
324,176 + MPMX19_04028 0.57 +0.0
324,177 - MPMX19_04028 0.57 -0.1
324,177 - MPMX19_04028 0.57 -3.0
324,177 - MPMX19_04028 0.57 -0.4
324,177 - MPMX19_04028 0.57 -0.5
324,227 + MPMX19_04028 0.60 -0.5
324,227 + MPMX19_04028 0.60 +0.2
324,227 + MPMX19_04028 0.60 +0.4
324,227 + MPMX19_04028 0.60 -1.2
324,227 + MPMX19_04028 0.60 -0.3
324,227 + MPMX19_04028 0.60 -1.4
324,227 + MPMX19_04028 0.60 -0.1
324,227 + MPMX19_04028 0.60 +1.0
324,227 + MPMX19_04028 0.60 -0.1
324,227 + MPMX19_04028 0.60 +0.2
324,227 + MPMX19_04028 0.60 -0.1
324,228 - MPMX19_04028 0.61 +0.1
324,228 - MPMX19_04028 0.61 +0.9
324,228 - MPMX19_04028 0.61 -1.2
324,228 - MPMX19_04028 0.61 +0.4
324,458 + MPMX19_04028 0.78 +0.4
324,458 + MPMX19_04028 0.78 -0.5
324,458 + MPMX19_04028 0.78 +0.4
324,458 + MPMX19_04028 0.78 +0.4
324,459 - MPMX19_04028 0.78 +1.2
324,623 + -1.2
324,623 + +0.4
324,624 - -0.7
324,805 + -1.7
325,099 + MPMX19_04029 0.23 +0.2
325,099 + MPMX19_04029 0.23 -1.1
325,100 - MPMX19_04029 0.23 -1.1
325,100 - MPMX19_04029 0.23 +0.2
325,102 + MPMX19_04029 0.23 +0.0
325,102 + MPMX19_04029 0.23 +0.2
325,102 + MPMX19_04029 0.23 +0.2
325,102 + MPMX19_04029 0.23 -0.3
325,102 + MPMX19_04029 0.23 +0.2
325,102 + MPMX19_04029 0.23 +1.2
325,102 + MPMX19_04029 0.23 -0.3
325,102 + MPMX19_04029 0.23 -2.3
325,102 + MPMX19_04029 0.23 -0.8
325,102 + MPMX19_04029 0.23 +0.3
325,102 + MPMX19_04029 0.23 +1.3
325,103 - MPMX19_04029 0.23 -1.8
325,103 - MPMX19_04029 0.23 -0.5
325,103 - MPMX19_04029 0.23 -0.0
325,103 - MPMX19_04029 0.23 -0.3
325,103 - MPMX19_04029 0.23 -0.4
325,103 - MPMX19_04029 0.23 -1.1
325,103 - MPMX19_04029 0.23 +0.4
325,103 - MPMX19_04029 0.23 +0.2
325,171 + MPMX19_04029 0.31 -1.2
325,693 + MPMX19_04029 0.87 +0.3
325,693 + MPMX19_04029 0.87 -0.8
325,693 + MPMX19_04029 0.87 +1.7
325,693 + MPMX19_04029 0.87 -1.8
325,693 + MPMX19_04029 0.87 +0.7
325,693 + MPMX19_04029 0.87 -2.0
325,693 + MPMX19_04029 0.87 +1.3
325,694 - MPMX19_04029 0.87 +0.0
325,696 + MPMX19_04029 0.87 +0.6
325,696 + MPMX19_04029 0.87 +0.2
325,696 + MPMX19_04029 0.87 -1.5
325,696 + MPMX19_04029 0.87 -0.4
325,696 + MPMX19_04029 0.87 +1.0
325,696 + MPMX19_04029 0.87 -1.2
325,696 + MPMX19_04029 0.87 -0.6
325,696 + MPMX19_04029 0.87 -0.6
325,696 + MPMX19_04029 0.87 +0.2
325,697 - MPMX19_04029 0.87 +0.7
325,697 - MPMX19_04029 0.87 -1.2
325,697 - MPMX19_04029 0.87 -0.3
325,697 - MPMX19_04029 0.87 -0.1
325,697 - MPMX19_04029 0.87 -1.7
325,697 - MPMX19_04029 0.87 -0.4
325,697 - MPMX19_04029 0.87 -2.7
325,697 - MPMX19_04029 0.87 +1.5

Or see this region's nucleotide sequence